1CRFA

Cardiotoxin ii from taiwan cobra venom, naja naja atra: structure in solution and comparision among homologous cardiotoxins
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
60
structure length
60
Chain Sequence
LKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CARDIOTOXIN II
publication title Cardiotoxin II from Taiwan cobra venom, Naja naja atra. Structure in solution and comparison among homologous cardiotoxins.
pubmed rcsb
source organism Naja atra
molecule tags Cardiotoxin
total genus 6
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 1994-03-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1crfA00
2QJAC 2X8BB 3VTSA 3NEQA 1KBTA 4OM4A 1HAJA 3PLCA 1IKCA 2CDXA 1ERGA 2VLWA 1DRSA 1V6PA 1RL5A 1JBDA 2GOOC 1S4YA 2H62C 1CDRA 5DU1A 5DZ5A 1ONJA 1HAAA 1CXOA 5IMTD 1ZADA 2N99A 4EY8B 1HC9A 3QB4B 4OM5A 3KFDE 1KXIA 1QM7A 1KBSA 2ERAA 1M9ZA 2MUPA 1YWHA 1I02A 2ABXA 2PJYB 1ERAA 4BDTB 1ES7B 1FSSB 1TXAA 1CDQA 1CREA 2H8UA 2BTXA 1KL8A 4FAOE 2NBTA 1KBAA 1KTZB 1JE9A 3FEVA 4BIKB 1F8UB 1QKDA 3NH7A 2MJYA 2MFAA 1KS6A 1TXBA 3KFDI 1IDLA 2BHIA 4HQPF 1L4WA 4QTIU 1TFSA 4XJJA 1IDIA 1KC4A 2CTXA 2CRSA 1CTXA 2HLRA 2QC1A 1HC9B 2H62D 6EBXA 4LFTA 3U73U 4UY2C 1CODA 1COEA 4DO8A 1FASA 2L03A 2MHYA 2GOOB 2H7ZA 3NDSA 1NYUA 1QKEA 1IQ9A 1W6BA 2L5SA 2H64C 1CXNA 2I9BE 2QJ9C 1NTNA 2HLQA 3BT2U 4P7UA 1UG4A 1IJCA 1CRFA 1ABTA 1RGJA 1FSCA 2QJBC 1CHVS 3LAQU 1IK8A 1VB0A 1CCQA 1TGXA 1NXBA 4RUDA 1CDTA 1KU6B 2H5FA 2H7ZB 5DO6A 1G6MA 1MAHF 4ZQYA 1BTEA 2MUOA 2LCRA 2MJ4A 4AEAA 1CDSA 1IDHA 4FAOC 1XT3A 1LXGA 1KFHA 2MJ0A 3ERAA 2UX2A 2JVEA 1NTXA 1JGKA 1BXPA 1PLOA 1CVOA 1NORA 3HH7A 1LSIA 1FFJA 4IYEA 1LJZA 2LA1A 2H64B 5IMYC 2J8BA 2FD6U 5EBXA 1CB9A 1H0JA 3BT1U 3U74U 2K3GA 2OFSA 1LXHA 2PJYC 1HOYA 1FF4A 3EVSC 2UWRA 2CRTA 1IDGA 1MR6A 1LX5B 1REWC 2JQPA 3EBXA 1B41B 1NEAA 1FRAA 1NYSA 2CCXA 1F94A
chains in the Genus database with same CATH superfamily
2QJAC 2X8BB 3VTSA 3NEQA 1KBTA 4OM4A 1HAJA 3PLCA 1IKCA 2CDXA 1ERGA 2VLWA 1DRSA 1V6PA 1RL5A 1JBDA 2GOOC 1S4YA 2H62C 1CDRA 5DU1A 5DZ5A 1ONJA 1HAAA 1CXOA 5IMTD 1ZADA 2N99A 4EY8B 1HC9A 3QB4B 4OM5A 3KFDE 1KXIA 1QM7A 1KBSA 2ERAA 1M9ZA 2MUPA 1YWHA 1I02A 2ABXA 2PJYB 1ERAA 4BDTB 1ES7B 1FSSB 1TXAA 1CDQA 1CREA 2H8UA 2BTXA 1KL8A 4FAOE 2NBTA 1KBAA 1KTZB 1JE9A 3FEVA 4BIKB 1F8UB 1QKDA 3NH7A 2MJYA 2MFAA 1KS6A 1TXBA 3KFDI 1IDLA 2BHIA 4HQPF 1L4WA 4QTIU 1TFSA 4XJJA 1IDIA 1KC4A 2CTXA 2CRSA 1CTXA 2HLRA 2QC1A 1HC9B 2H62D 6EBXA 4LFTA 3U73U 4UY2C 4KSNA 1CODA 1COEA 4DO8A 1FASA 2L03A 2MHYA 2GOOB 2H7ZA 3NDSA 1NYUA 1QKEA 1IQ9A 1W6BA 2L5SA 2H64C 1CXNA 2I9BE 2QJ9C 1NTNA 2HLQA 3BT2U 4P7UA 1UG4A 1IJCA 1CRFA 1ABTA 1RGJA 1FSCA 2QJBC 1CHVS 3LAQU 1IK8A 1VB0A 1CCQA 1TGXA 1NXBA 4RUDA 1CDTA 1KU6B 2H5FA 2H7ZB 5DO6A 1G6MA 1MAHF 4ZQYA 1BTEA 2MUOA 2LCRA 2MJ4A 4AEAA 1CDSA 1IDHA 4FAOC 1XT3A 1LXGA 1KFHA 2MJ0A 3ERAA 2UX2A 2JVEA 1NTXA 1JGKA 1BXPA 1PLOA 1CVOA 1NORA 3HH7A 1LSIA 1FFJA 4IYEA 1LJZA 2LA1A 2H64B 5IMYC 2J8BA 2FD6U 5EBXA 1CB9A 1H0JA 3BT1U 3U74U 2K3GA 2OFSA 1LXHA 2PJYC 1HOYA 1FF4A 3EVSC 2UWRA 2CRTA 1IDGA 1MR6A 1LX5B 1REWC 2JQPA 3EBXA 1B41B 1NEAA 1FRAA 1NYSA 2CCXA 1F94A
chains in the Genus database with same CATH topology
2QJAC 2X8BB 3VTSA 3NEQA 1KBTA 4OM4A 1HAJA 3PLCA 1IKCA 2CDXA 1ERGA 2VLWA 1DRSA 1V6PA 1RL5A 1JBDA 2GOOC 1S4YA 2H62C 1CDRA 5DU1A 5DZ5A 1ONJA 1HAAA 1CXOA 5IMTD 1ZADA 2N99A 4EY8B 1HC9A 3QB4B 4OM5A 3KFDE 1KXIA 1QM7A 1KBSA 2ERAA 1M9ZA 2MUPA 1YWHA 1I02A 2ABXA 2PJYB 1ERAA 4BDTB 1ES7B 1FSSB 1TXAA 1CDQA 1CREA 2H8UA 2BTXA 1KL8A 4FAOE 2NBTA 1KBAA 1KTZB 1JE9A 3FEVA 4BIKB 1F8UB 1QKDA 3NH7A 2MJYA 2MFAA 1KS6A 1TXBA 3KFDI 1IDLA 2BHIA 4HQPF 1L4WA 4QTIU 1TFSA 4XJJA 1IDIA 1KC4A 2CTXA 2CRSA 1CTXA 2HLRA 2QC1A 1HC9B 2H62D 6EBXA 4LFTA 3U73U 4UY2C 4KSNA 1CODA 1COEA 4DO8A 1FASA 2L03A 2MHYA 2GOOB 2H7ZA 3NDSA 1NYUA 1QKEA 1IQ9A 1W6BA 2L5SA 2H64C 1CXNA 2I9BE 2QJ9C 1NTNA 2HLQA 3BT2U 4P7UA 1UG4A 1IJCA 1CRFA 1ABTA 1RGJA 1FSCA 2QJBC 1CHVS 3LAQU 1IK8A 1VB0A 1CCQA 1TGXA 1NXBA 4RUDA 1CDTA 1KU6B 2H5FA 2H7ZB 5DO6A 1G6MA 1MAHF 4ZQYA 1BTEA 2MUOA 2LCRA 2MJ4A 4AEAA 1CDSA 1IDHA 4FAOC 1XT3A 1LXGA 1KFHA 2MJ0A 3ERAA 2UX2A 2JVEA 1NTXA 1JGKA 1BXPA 1PLOA 1CVOA 1NORA 3HH7A 1LSIA 1FFJA 4IYEA 1LJZA 2LA1A 2H64B 5IMYC 2J8BA 2FD6U 5EBXA 1CB9A 1H0JA 3BT1U 3U74U 2K3GA 2OFSA 1LXHA 2PJYC 1HOYA 1FF4A 3EVSC 2UWRA 2CRTA 1IDGA 1MR6A 1LX5B 1REWC 2JQPA 3EBXA 1B41B 1NEAA 1FRAA 1NYSA 2CCXA 1F94A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJA C;  2X8B B;  3VTS A;  3NEQ A;  1KBT A;  4OM4 A;  1HAJ A;  3PLC A;  1IKC A;  2CDX A;  1ERG A;  2VLW A;  1DRS A;  1V6P A;  1RL5 A;  1JBD A;  2GOO C;  1S4Y A;  2H62 C;  1CDR A;  5DU1 A;  5DZ5 A;  1ONJ A;  1HAA A;  1CXO A;  5IMT D;  1ZAD A;  2N99 A;  4EY8 B;  1HC9 A;  3QB4 B;  4OM5 A;  3KFD E;  1KXI A;  1QM7 A;  1KBS A;  2ERA A;  1M9Z A;  2MUP A;  1YWH A;  1I02 A;  2ABX A;  2PJY B;  1ERA A;  4BDT B;  1ES7 B;  1FSS B;  1TXA A;  1CDQ A;  1CRE A;  2H8U A;  2BTX A;  1KL8 A;  4FAO E;  2NBT A;  1KBA A;  1KTZ B;  1JE9 A;  3FEV A;  4BIK B;  1F8U B;  1QKD A;  3NH7 A;  2MJY A;  2MFA A;  1KS6 A;  1TXB A;  3KFD I;  1IDL A;  2BHI A;  4HQP F;  1L4W A;  4QTI U;  1TFS A;  4XJJ A;  1IDI A;  1KC4 A;  2CTX A;  2CRS A;  1CTX A;  2HLR A;  2QC1 A;  1HC9 B;  2H62 D;  6EBX A;  4LFT A;  3U73 U;  4UY2 C;  1COD A;  1COE A;  4DO8 A;  1FAS A;  2L03 A;  2MHY A;  2GOO B;  2H7Z A;  3NDS A;  1NYU A;  1QKE A;  1IQ9 A;  1W6B A;  2L5S A;  2H64 C;  1CXN A;  2I9B E;  2QJ9 C;  1NTN A;  2HLQ A;  3BT2 U;  4P7U A;  1UG4 A;  1IJC A;  1CRF A;  1ABT A;  1RGJ A;  1FSC A;  2QJB C;  1CHV S;  3LAQ U;  1IK8 A;  1VB0 A;  1CCQ A;  1TGX A;  1NXB A;  4RUD A;  1CDT A;  1KU6 B;  2H5F A;  2H7Z B;  5DO6 A;  1G6M A;  1MAH F;  4ZQY A;  1BTE A;  2MUO A;  2LCR A;  2MJ4 A;  4AEA A;  1CDS A;  1IDH A;  4FAO C;  1XT3 A;  1LXG A;  1KFH A;  2MJ0 A;  3ERA A;  2UX2 A;  2JVE A;  1NTX A;  1JGK A;  1BXP A;  1PLO A;  1CVO A;  1NOR A;  3HH7 A;  1LSI A;  1FFJ A;  4IYE A;  1LJZ A;  2LA1 A;  2H64 B;  5IMY C;  2J8B A;  2FD6 U;  5EBX A;  1CB9 A;  1H0J A;  3BT1 U;  3U74 U;  2K3G A;  2OFS A;  1LXH A;  2PJY C;  1HOY A;  1FF4 A;  3EVS C;  2UWR A;  2CRT A;  1IDG A;  1MR6 A;  1LX5 B;  1REW C;  2JQP A;  3EBX A;  1B41 B;  1NEA A;  1FRA A;  1NYS A;  2CCX A;  1F94 A; 
#chains in the Genus database with same CATH topology
 2QJA C;  2X8B B;  3VTS A;  3NEQ A;  1KBT A;  4OM4 A;  1HAJ A;  3PLC A;  1IKC A;  2CDX A;  1ERG A;  2VLW A;  1DRS A;  1V6P A;  1RL5 A;  1JBD A;  2GOO C;  1S4Y A;  2H62 C;  1CDR A;  5DU1 A;  5DZ5 A;  1ONJ A;  1HAA A;  1CXO A;  5IMT D;  1ZAD A;  2N99 A;  4EY8 B;  1HC9 A;  3QB4 B;  4OM5 A;  3KFD E;  1KXI A;  1QM7 A;  1KBS A;  2ERA A;  1M9Z A;  2MUP A;  1YWH A;  1I02 A;  2ABX A;  2PJY B;  1ERA A;  4BDT B;  1ES7 B;  1FSS B;  1TXA A;  1CDQ A;  1CRE A;  2H8U A;  2BTX A;  1KL8 A;  4FAO E;  2NBT A;  1KBA A;  1KTZ B;  1JE9 A;  3FEV A;  4BIK B;  1F8U B;  1QKD A;  3NH7 A;  2MJY A;  2MFA A;  1KS6 A;  1TXB A;  3KFD I;  1IDL A;  2BHI A;  4HQP F;  1L4W A;  4QTI U;  1TFS A;  4XJJ A;  1IDI A;  1KC4 A;  2CTX A;  2CRS A;  1CTX A;  2HLR A;  2QC1 A;  1HC9 B;  2H62 D;  6EBX A;  4LFT A;  3U73 U;  4UY2 C;  4KSN A;  1COD A;  1COE A;  4DO8 A;  1FAS A;  2L03 A;  2MHY A;  2GOO B;  2H7Z A;  3NDS A;  1NYU A;  1QKE A;  1IQ9 A;  1W6B A;  2L5S A;  2H64 C;  1CXN A;  2I9B E;  2QJ9 C;  1NTN A;  2HLQ A;  3BT2 U;  4P7U A;  1UG4 A;  1IJC A;  1CRF A;  1ABT A;  1RGJ A;  1FSC A;  2QJB C;  1CHV S;  3LAQ U;  1IK8 A;  1VB0 A;  1CCQ A;  1TGX A;  1NXB A;  4RUD A;  1CDT A;  1KU6 B;  2H5F A;  2H7Z B;  5DO6 A;  1G6M A;  1MAH F;  4ZQY A;  1BTE A;  2MUO A;  2LCR A;  2MJ4 A;  4AEA A;  1CDS A;  1IDH A;  4FAO C;  1XT3 A;  1LXG A;  1KFH A;  2MJ0 A;  3ERA A;  2UX2 A;  2JVE A;  1NTX A;  1JGK A;  1BXP A;  1PLO A;  1CVO A;  1NOR A;  3HH7 A;  1LSI A;  1FFJ A;  4IYE A;  1LJZ A;  2LA1 A;  2H64 B;  5IMY C;  2J8B A;  2FD6 U;  5EBX A;  1CB9 A;  1H0J A;  3BT1 U;  3U74 U;  2K3G A;  2OFS A;  1LXH A;  2PJY C;  1HOY A;  1FF4 A;  3EVS C;  2UWR A;  2CRT A;  1IDG A;  1MR6 A;  1LX5 B;  1REW C;  2JQP A;  3EBX A;  1B41 B;  1NEA A;  1FRA A;  1NYS A;  2CCX A;  1F94 A; 
#chains in the Genus database with same CATH homology
 2QJA C;  2X8B B;  3VTS A;  3NEQ A;  1KBT A;  4OM4 A;  1HAJ A;  3PLC A;  1IKC A;  2CDX A;  1ERG A;  2VLW A;  1DRS A;  1V6P A;  1RL5 A;  1JBD A;  2GOO C;  1S4Y A;  2H62 C;  1CDR A;  5DU1 A;  5DZ5 A;  1ONJ A;  1HAA A;  1CXO A;  5IMT D;  1ZAD A;  2N99 A;  4EY8 B;  1HC9 A;  3QB4 B;  4OM5 A;  3KFD E;  1KXI A;  1QM7 A;  1KBS A;  2ERA A;  1M9Z A;  2MUP A;  1YWH A;  1I02 A;  2ABX A;  2PJY B;  1ERA A;  4BDT B;  1ES7 B;  1FSS B;  1TXA A;  1CDQ A;  1CRE A;  2H8U A;  2BTX A;  1KL8 A;  4FAO E;  2NBT A;  1KBA A;  1KTZ B;  1JE9 A;  3FEV A;  4BIK B;  1F8U B;  1QKD A;  3NH7 A;  2MJY A;  2MFA A;  1KS6 A;  1TXB A;  3KFD I;  1IDL A;  2BHI A;  4HQP F;  1L4W A;  4QTI U;  1TFS A;  4XJJ A;  1IDI A;  1KC4 A;  2CTX A;  2CRS A;  1CTX A;  2HLR A;  2QC1 A;  1HC9 B;  2H62 D;  6EBX A;  4LFT A;  3U73 U;  4UY2 C;  4KSN A;  1COD A;  1COE A;  4DO8 A;  1FAS A;  2L03 A;  2MHY A;  2GOO B;  2H7Z A;  3NDS A;  1NYU A;  1QKE A;  1IQ9 A;  1W6B A;  2L5S A;  2H64 C;  1CXN A;  2I9B E;  2QJ9 C;  1NTN A;  2HLQ A;  3BT2 U;  4P7U A;  1UG4 A;  1IJC A;  1CRF A;  1ABT A;  1RGJ A;  1FSC A;  2QJB C;  1CHV S;  3LAQ U;  1IK8 A;  1VB0 A;  1CCQ A;  1TGX A;  1NXB A;  4RUD A;  1CDT A;  1KU6 B;  2H5F A;  2H7Z B;  5DO6 A;  1G6M A;  1MAH F;  4ZQY A;  1BTE A;  2MUO A;  2LCR A;  2MJ4 A;  4AEA A;  1CDS A;  1IDH A;  4FAO C;  1XT3 A;  1LXG A;  1KFH A;  2MJ0 A;  3ERA A;  2UX2 A;  2JVE A;  1NTX A;  1JGK A;  1BXP A;  1PLO A;  1CVO A;  1NOR A;  3HH7 A;  1LSI A;  1FFJ A;  4IYE A;  1LJZ A;  2LA1 A;  2H64 B;  5IMY C;  2J8B A;  2FD6 U;  5EBX A;  1CB9 A;  1H0J A;  3BT1 U;  3U74 U;  2K3G A;  2OFS A;  1LXH A;  2PJY C;  1HOY A;  1FF4 A;  3EVS C;  2UWR A;  2CRT A;  1IDG A;  1MR6 A;  1LX5 B;  1REW C;  2JQP A;  3EBX A;  1B41 B;  1NEA A;  1FRA A;  1NYS A;  2CCX A;  1F94 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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