1CRFA

Cardiotoxin ii from taiwan cobra venom, naja naja atra: structure in solution and comparision among homologous cardiotoxins
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
60
structure length
60
Chain Sequence
LKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cardiotoxin
source organism Naja atra
publication title Cardiotoxin II from Taiwan cobra venom, Naja naja atra. Structure in solution and comparison among homologous cardiotoxins.
pubmed rcsb
molecule keywords CARDIOTOXIN II
total genus 6
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 1994-03-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1crfA00
5DO6A 1G6MA 4OM5A 1HAJA 1NYSA 1UG4A 1CDRA 1F8UB 1F94A 2L03A 1CDQA 2HLRA 3NDSA 1V6PA 4QTIU 4BIKB 4LFTA 2CRSA 1TGXA 1W6BA 1FSSB 2CRTA 2MJYA 2H64C 1B41B 1NORA 1MAHF 2QJ9C 1QM7A 4IYEA 1ONJA 1RL5A 1FF4A 2UWRA 1LJZA 1NYUA 2QC1A 3EBXA 1KC4A 2H64B 1HC9B 1CDTA 3QB4B 1I02A 1M9ZA 2H62C 4AEAA 1KBTA 1KS6A 1LXHA 4UY2C 3KFDE 1S4YA 1CVOA 2MUPA 3BT2U 4HQPF 1QKEA 1CXOA 2H8UA 1CTXA 2H5FA 1CRFA 2MJ0A 1NTNA 3NH7A 1IDHA 2H7ZB 1CREA 1CDSA 2HLQA 2MUOA 1JBDA 1IDIA 2CDXA 1IJCA 1TXBA 1KXIA 2FD6U 1REWC 2LCRA 1CXNA 2JVEA 2L5SA 2GOOC 4EY8B 1DRSA 1LSIA 1KL8A 1BTEA 5EBXA 2VLWA 5IMYC 2ABXA 2CTXA 2J8BA 1LXGA 2K3GA 5IMTD 2MJ4A 1RGJA 3PLCA 1NEAA 2H62D 2GOOB 2LA1A 4ZQYA 4RUDA 2MHYA 1KBAA 2UX2A 1HAAA 3FEVA 2OFSA 1KFHA 1ES7B 1VB0A 1ERAA 2MFAA 1IQ9A 2JQPA 3ERAA 3EVSC 4DO8A 1IKCA 1CB9A 1COEA 1FASA 2PJYC 1CHVS 1JGKA 1FRAA 2BTXA 2CCXA 1CODA 2NBTA 1XT3A 5DU1A 1KU6B 3HH7A 4FAOE 4BDTB 2PJYB 1TXAA 4P7UA 1HOYA 1HC9A 3VTSA 1FFJA 3U73U 1QKDA 1KBSA 3BT1U 1YWHA 1ABTA 1H0JA 3KFDI 1KTZB 1LX5B 1ZADA 1ERGA 2BHIA 1MR6A 1NXBA 1L4WA 1IDGA 1FSCA 2N99A 3NEQA 4FAOC 6EBXA 2X8BB 1IDLA 1BXPA 3U74U 5DZ5A 2QJBC 1JE9A 2QJAC 2H7ZA 3LAQU 1IK8A 1CCQA 1PLOA 4XJJA 1TFSA 1NTXA 2ERAA 4OM4A 2I9BE
chains in the Genus database with same CATH superfamily
5DO6A 1G6MA 4OM5A 1HAJA 1NYSA 1UG4A 1CDRA 1F8UB 1F94A 2L03A 1CDQA 2HLRA 3NDSA 1V6PA 4QTIU 4BIKB 4LFTA 2CRSA 1TGXA 1W6BA 1FSSB 2CRTA 2MJYA 2H64C 1B41B 1NORA 1MAHF 2QJ9C 1QM7A 4IYEA 1ONJA 1RL5A 1FF4A 2UWRA 1LJZA 1NYUA 2QC1A 3EBXA 1KC4A 2H64B 1HC9B 1CDTA 3QB4B 1I02A 1M9ZA 2H62C 4AEAA 1KBTA 4KSNA 1KS6A 1LXHA 4UY2C 3KFDE 1S4YA 1CVOA 2MUPA 3BT2U 4HQPF 1QKEA 1CXOA 2H8UA 1CTXA 2H5FA 1CRFA 2MJ0A 1NTNA 3NH7A 1IDHA 2H7ZB 1CREA 1CDSA 2HLQA 2MUOA 1JBDA 1IDIA 2CDXA 1IJCA 1TXBA 1KXIA 2FD6U 1REWC 2LCRA 1CXNA 2JVEA 2L5SA 2GOOC 4EY8B 1DRSA 1LSIA 1KL8A 1BTEA 5EBXA 2VLWA 5IMYC 2ABXA 2CTXA 2J8BA 1LXGA 2K3GA 5IMTD 2MJ4A 1RGJA 3PLCA 1NEAA 2H62D 2GOOB 2LA1A 4ZQYA 4RUDA 2MHYA 1KBAA 2UX2A 1HAAA 3FEVA 2OFSA 1KFHA 1ES7B 1VB0A 1ERAA 2MFAA 1IQ9A 2JQPA 3ERAA 3EVSC 4DO8A 1IKCA 1CB9A 1COEA 1FASA 2PJYC 1CHVS 1JGKA 1FRAA 2BTXA 2CCXA 1CODA 2NBTA 1XT3A 5DU1A 1KU6B 3HH7A 4FAOE 4BDTB 2PJYB 1TXAA 4P7UA 1HOYA 1HC9A 3VTSA 1FFJA 3U73U 1QKDA 1KBSA 3BT1U 1YWHA 1ABTA 1H0JA 3KFDI 1KTZB 1LX5B 1ZADA 1ERGA 2BHIA 1MR6A 1NXBA 1L4WA 1IDGA 1FSCA 2N99A 3NEQA 4FAOC 6EBXA 2X8BB 1IDLA 1BXPA 3U74U 5DZ5A 2QJBC 1JE9A 2QJAC 2H7ZA 3LAQU 1IK8A 1CCQA 1PLOA 4XJJA 1TFSA 1NTXA 2ERAA 4OM4A 2I9BE
chains in the Genus database with same CATH topology
5DO6A 1G6MA 4OM5A 1HAJA 1NYSA 1UG4A 1CDRA 1F8UB 1F94A 2L03A 1CDQA 2HLRA 3NDSA 1V6PA 4QTIU 4BIKB 4LFTA 2CRSA 1TGXA 1W6BA 1FSSB 2CRTA 2MJYA 2H64C 1B41B 1NORA 1MAHF 2QJ9C 1QM7A 4IYEA 1ONJA 1RL5A 1FF4A 2UWRA 1LJZA 1NYUA 2QC1A 3EBXA 1KC4A 2H64B 1HC9B 1CDTA 3QB4B 1I02A 1M9ZA 2H62C 4AEAA 1KBTA 4KSNA 1KS6A 1LXHA 4UY2C 3KFDE 1S4YA 1CVOA 2MUPA 3BT2U 4HQPF 1QKEA 1CXOA 2H8UA 1CTXA 2H5FA 1CRFA 2MJ0A 1NTNA 3NH7A 1IDHA 2H7ZB 1CREA 1CDSA 2HLQA 2MUOA 1JBDA 1IDIA 2CDXA 1IJCA 1TXBA 1KXIA 2FD6U 1REWC 2LCRA 1CXNA 2JVEA 2L5SA 2GOOC 4EY8B 1DRSA 1LSIA 1KL8A 1BTEA 5EBXA 2VLWA 5IMYC 2ABXA 2CTXA 2J8BA 1LXGA 2K3GA 5IMTD 2MJ4A 1RGJA 3PLCA 1NEAA 2H62D 2GOOB 2LA1A 4ZQYA 4RUDA 2MHYA 1KBAA 2UX2A 1HAAA 3FEVA 2OFSA 1KFHA 1ES7B 1VB0A 1ERAA 2MFAA 1IQ9A 2JQPA 3ERAA 3EVSC 4DO8A 1IKCA 1CB9A 1COEA 1FASA 2PJYC 1CHVS 1JGKA 1FRAA 2BTXA 2CCXA 1CODA 2NBTA 1XT3A 5DU1A 1KU6B 3HH7A 4FAOE 4BDTB 2PJYB 1TXAA 4P7UA 1HOYA 1HC9A 3VTSA 1FFJA 3U73U 1QKDA 1KBSA 3BT1U 1YWHA 1ABTA 1H0JA 3KFDI 1KTZB 1LX5B 1ZADA 1ERGA 2BHIA 1MR6A 1NXBA 1L4WA 1IDGA 1FSCA 2N99A 3NEQA 4FAOC 6EBXA 2X8BB 1IDLA 1BXPA 3U74U 5DZ5A 2QJBC 1JE9A 2QJAC 2H7ZA 3LAQU 1IK8A 1CCQA 1PLOA 4XJJA 1TFSA 1NTXA 2ERAA 4OM4A 2I9BE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DO6 A;  1G6M A;  4OM5 A;  1HAJ A;  1NYS A;  1UG4 A;  1CDR A;  1F8U B;  1F94 A;  2L03 A;  1CDQ A;  2HLR A;  3NDS A;  1V6P A;  4QTI U;  4BIK B;  4LFT A;  2CRS A;  1TGX A;  1W6B A;  1FSS B;  2CRT A;  2MJY A;  2H64 C;  1B41 B;  1NOR A;  1MAH F;  2QJ9 C;  1QM7 A;  4IYE A;  1ONJ A;  1RL5 A;  1FF4 A;  2UWR A;  1LJZ A;  1NYU A;  2QC1 A;  3EBX A;  1KC4 A;  2H64 B;  1HC9 B;  1CDT A;  3QB4 B;  1I02 A;  1M9Z A;  2H62 C;  4AEA A;  1KBT A;  1KS6 A;  1LXH A;  4UY2 C;  3KFD E;  1S4Y A;  1CVO A;  2MUP A;  3BT2 U;  4HQP F;  1QKE A;  1CXO A;  2H8U A;  1CTX A;  2H5F A;  1CRF A;  2MJ0 A;  1NTN A;  3NH7 A;  1IDH A;  2H7Z B;  1CRE A;  1CDS A;  2HLQ A;  2MUO A;  1JBD A;  1IDI A;  2CDX A;  1IJC A;  1TXB A;  1KXI A;  2FD6 U;  1REW C;  2LCR A;  1CXN A;  2JVE A;  2L5S A;  2GOO C;  4EY8 B;  1DRS A;  1LSI A;  1KL8 A;  1BTE A;  5EBX A;  2VLW A;  5IMY C;  2ABX A;  2CTX A;  2J8B A;  1LXG A;  2K3G A;  5IMT D;  2MJ4 A;  1RGJ A;  3PLC A;  1NEA A;  2H62 D;  2GOO B;  2LA1 A;  4ZQY A;  4RUD A;  2MHY A;  1KBA A;  2UX2 A;  1HAA A;  3FEV A;  2OFS A;  1KFH A;  1ES7 B;  1VB0 A;  1ERA A;  2MFA A;  1IQ9 A;  2JQP A;  3ERA A;  3EVS C;  4DO8 A;  1IKC A;  1CB9 A;  1COE A;  1FAS A;  2PJY C;  1CHV S;  1JGK A;  1FRA A;  2BTX A;  2CCX A;  1COD A;  2NBT A;  1XT3 A;  5DU1 A;  1KU6 B;  3HH7 A;  4FAO E;  4BDT B;  2PJY B;  1TXA A;  4P7U A;  1HOY A;  1HC9 A;  3VTS A;  1FFJ A;  3U73 U;  1QKD A;  1KBS A;  3BT1 U;  1YWH A;  1ABT A;  1H0J A;  3KFD I;  1KTZ B;  1LX5 B;  1ZAD A;  1ERG A;  2BHI A;  1MR6 A;  1NXB A;  1L4W A;  1IDG A;  1FSC A;  2N99 A;  3NEQ A;  4FAO C;  6EBX A;  2X8B B;  1IDL A;  1BXP A;  3U74 U;  5DZ5 A;  2QJB C;  1JE9 A;  2QJA C;  2H7Z A;  3LAQ U;  1IK8 A;  1CCQ A;  1PLO A;  4XJJ A;  1TFS A;  1NTX A;  2ERA A;  4OM4 A;  2I9B E; 
#chains in the Genus database with same CATH topology
 5DO6 A;  1G6M A;  4OM5 A;  1HAJ A;  1NYS A;  1UG4 A;  1CDR A;  1F8U B;  1F94 A;  2L03 A;  1CDQ A;  2HLR A;  3NDS A;  1V6P A;  4QTI U;  4BIK B;  4LFT A;  2CRS A;  1TGX A;  1W6B A;  1FSS B;  2CRT A;  2MJY A;  2H64 C;  1B41 B;  1NOR A;  1MAH F;  2QJ9 C;  1QM7 A;  4IYE A;  1ONJ A;  1RL5 A;  1FF4 A;  2UWR A;  1LJZ A;  1NYU A;  2QC1 A;  3EBX A;  1KC4 A;  2H64 B;  1HC9 B;  1CDT A;  3QB4 B;  1I02 A;  1M9Z A;  2H62 C;  4AEA A;  1KBT A;  4KSN A;  1KS6 A;  1LXH A;  4UY2 C;  3KFD E;  1S4Y A;  1CVO A;  2MUP A;  3BT2 U;  4HQP F;  1QKE A;  1CXO A;  2H8U A;  1CTX A;  2H5F A;  1CRF A;  2MJ0 A;  1NTN A;  3NH7 A;  1IDH A;  2H7Z B;  1CRE A;  1CDS A;  2HLQ A;  2MUO A;  1JBD A;  1IDI A;  2CDX A;  1IJC A;  1TXB A;  1KXI A;  2FD6 U;  1REW C;  2LCR A;  1CXN A;  2JVE A;  2L5S A;  2GOO C;  4EY8 B;  1DRS A;  1LSI A;  1KL8 A;  1BTE A;  5EBX A;  2VLW A;  5IMY C;  2ABX A;  2CTX A;  2J8B A;  1LXG A;  2K3G A;  5IMT D;  2MJ4 A;  1RGJ A;  3PLC A;  1NEA A;  2H62 D;  2GOO B;  2LA1 A;  4ZQY A;  4RUD A;  2MHY A;  1KBA A;  2UX2 A;  1HAA A;  3FEV A;  2OFS A;  1KFH A;  1ES7 B;  1VB0 A;  1ERA A;  2MFA A;  1IQ9 A;  2JQP A;  3ERA A;  3EVS C;  4DO8 A;  1IKC A;  1CB9 A;  1COE A;  1FAS A;  2PJY C;  1CHV S;  1JGK A;  1FRA A;  2BTX A;  2CCX A;  1COD A;  2NBT A;  1XT3 A;  5DU1 A;  1KU6 B;  3HH7 A;  4FAO E;  4BDT B;  2PJY B;  1TXA A;  4P7U A;  1HOY A;  1HC9 A;  3VTS A;  1FFJ A;  3U73 U;  1QKD A;  1KBS A;  3BT1 U;  1YWH A;  1ABT A;  1H0J A;  3KFD I;  1KTZ B;  1LX5 B;  1ZAD A;  1ERG A;  2BHI A;  1MR6 A;  1NXB A;  1L4W A;  1IDG A;  1FSC A;  2N99 A;  3NEQ A;  4FAO C;  6EBX A;  2X8B B;  1IDL A;  1BXP A;  3U74 U;  5DZ5 A;  2QJB C;  1JE9 A;  2QJA C;  2H7Z A;  3LAQ U;  1IK8 A;  1CCQ A;  1PLO A;  4XJJ A;  1TFS A;  1NTX A;  2ERA A;  4OM4 A;  2I9B E; 
#chains in the Genus database with same CATH homology
 5DO6 A;  1G6M A;  4OM5 A;  1HAJ A;  1NYS A;  1UG4 A;  1CDR A;  1F8U B;  1F94 A;  2L03 A;  1CDQ A;  2HLR A;  3NDS A;  1V6P A;  4QTI U;  4BIK B;  4LFT A;  2CRS A;  1TGX A;  1W6B A;  1FSS B;  2CRT A;  2MJY A;  2H64 C;  1B41 B;  1NOR A;  1MAH F;  2QJ9 C;  1QM7 A;  4IYE A;  1ONJ A;  1RL5 A;  1FF4 A;  2UWR A;  1LJZ A;  1NYU A;  2QC1 A;  3EBX A;  1KC4 A;  2H64 B;  1HC9 B;  1CDT A;  3QB4 B;  1I02 A;  1M9Z A;  2H62 C;  4AEA A;  1KBT A;  4KSN A;  1KS6 A;  1LXH A;  4UY2 C;  3KFD E;  1S4Y A;  1CVO A;  2MUP A;  3BT2 U;  4HQP F;  1QKE A;  1CXO A;  2H8U A;  1CTX A;  2H5F A;  1CRF A;  2MJ0 A;  1NTN A;  3NH7 A;  1IDH A;  2H7Z B;  1CRE A;  1CDS A;  2HLQ A;  2MUO A;  1JBD A;  1IDI A;  2CDX A;  1IJC A;  1TXB A;  1KXI A;  2FD6 U;  1REW C;  2LCR A;  1CXN A;  2JVE A;  2L5S A;  2GOO C;  4EY8 B;  1DRS A;  1LSI A;  1KL8 A;  1BTE A;  5EBX A;  2VLW A;  5IMY C;  2ABX A;  2CTX A;  2J8B A;  1LXG A;  2K3G A;  5IMT D;  2MJ4 A;  1RGJ A;  3PLC A;  1NEA A;  2H62 D;  2GOO B;  2LA1 A;  4ZQY A;  4RUD A;  2MHY A;  1KBA A;  2UX2 A;  1HAA A;  3FEV A;  2OFS A;  1KFH A;  1ES7 B;  1VB0 A;  1ERA A;  2MFA A;  1IQ9 A;  2JQP A;  3ERA A;  3EVS C;  4DO8 A;  1IKC A;  1CB9 A;  1COE A;  1FAS A;  2PJY C;  1CHV S;  1JGK A;  1FRA A;  2BTX A;  2CCX A;  1COD A;  2NBT A;  1XT3 A;  5DU1 A;  1KU6 B;  3HH7 A;  4FAO E;  4BDT B;  2PJY B;  1TXA A;  4P7U A;  1HOY A;  1HC9 A;  3VTS A;  1FFJ A;  3U73 U;  1QKD A;  1KBS A;  3BT1 U;  1YWH A;  1ABT A;  1H0J A;  3KFD I;  1KTZ B;  1LX5 B;  1ZAD A;  1ERG A;  2BHI A;  1MR6 A;  1NXB A;  1L4W A;  1IDG A;  1FSC A;  2N99 A;  3NEQ A;  4FAO C;  6EBX A;  2X8B B;  1IDL A;  1BXP A;  3U74 U;  5DZ5 A;  2QJB C;  1JE9 A;  2QJA C;  2H7Z A;  3LAQ U;  1IK8 A;  1CCQ A;  1PLO A;  4XJJ A;  1TFS A;  1NTX A;  2ERA A;  4OM4 A;  2I9B E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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