1CXOA

Refined three-dimensional solution structure of a snake cardiotoxin: analysis of the side-chain organisation suggests the existence of a possible phospholipid binding site
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
LKCNQLIPPFWKTCPKGKNLCYKMTMRAAPMVPVKRGCIDVCPKSSLLIKYMCCNTDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytotoxin
source organism Naja nigricollis
publication title Refined three-dimensional solution structure of a snake cardiotoxin: analysis of the side-chain organization suggests the existence of a possible phospholipid binding site.
pubmed doi rcsb
molecule keywords CARDIOTOXIN GAMMA
total genus 9
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 1994-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1cxoA00
2MUPA 3U73U 4UY2C 1CODA 2K3GA 2L5SA 3U74U 2LA1A 2H62C 1RL5A 1LX5B 1HC9B 2QJ9C 3NEQA 1MR6A 2FD6U 2QC1A 3ERAA 1TGXA 2GOOC 4QTIU 1LJZA 4FAOC 1ZADA 2JVEA 1KBAA 1CB9A 1V6PA 2QJBC 4OM5A 2QJAC 1IDHA 1KTZB 1ERGA 1FSCA 1QM7A 2MFAA 4DO8A 2H64B 1FSSB 2BHIA 4ZQYA 2CTXA 2I9BE 1FFJA 2H7ZA 4BIKB 2H62D 2HLRA 1DRSA 2BTXA 1HOYA 1COEA 3LAQU 2H8UA 2X8BB 1JGKA 1LSIA 1FF4A 3VTSA 4AEAA 1BXPA 1CXOA 1CHVS 1MAHF 4HQPF 1KBSA 2UX2A 1CDSA 1TFSA 2CRSA 1VB0A 1HC9A 1JE9A 1L4WA 1QKEA 4RUDA 1KBTA 1ES7B 1NYUA 1ABTA 1REWC 1CDRA 1IDLA 1H0JA 5EBXA 1G6MA 2H64C 1NXBA 2CRTA 2PJYB 2NBTA 1ONJA 1PLOA 5DU1A 1KU6B 4OM4A 1NYSA 1LXHA 2LCRA 1NTXA 1HAJA 4P7UA 4BDTB 3BT2U 2OFSA 1CVOA 1KC4A 1CXNA 1YWHA 1XT3A 1CDQA 2MHYA 1BTEA 2MJYA 2J8BA 1CCQA 4EY8B 2CDXA 3QB4B 1I02A 1NEAA 3HH7A 2ERAA 2JQPA 3FEVA 1FASA 2MJ4A 1CRFA 1FRAA 2N99A 3BT1U 5IMTD 6EBXA 1IKCA 1CREA 2VLWA 1S4YA 1JBDA 1TXBA 1NTNA 2HLQA 1W6BA 2PJYC 1HAAA 3KFDE 4FAOE 5IMYC 1TXAA 2H5FA 1IDGA 1F94A 3EBXA 3PLCA 5DO6A 1UG4A 1IK8A 2GOOB 1CDTA 2UWRA 1CTXA 2ABXA 3NDSA 3NH7A 4IYEA 1B41B 1KXIA 1IDIA 1RGJA 5DZ5A 2H7ZB 2CCXA 1ERAA 3EVSC 1NORA 3KFDI 4LFTA 1IJCA 1F8UB 1LXGA 1M9ZA 2MJ0A 2MUOA 1KFHA 1KS6A 1KL8A 1IQ9A 1QKDA 2L03A 4XJJA
chains in the Genus database with same CATH superfamily
2MUPA 3U73U 4UY2C 1CODA 2K3GA 2L5SA 3U74U 2LA1A 2H62C 1RL5A 1LX5B 1HC9B 2QJ9C 3NEQA 1MR6A 2FD6U 2QC1A 3ERAA 1TGXA 2GOOC 4QTIU 1LJZA 4FAOC 1ZADA 2JVEA 1KBAA 1CB9A 1V6PA 2QJBC 4OM5A 2QJAC 1IDHA 1KTZB 1ERGA 1FSCA 1QM7A 2MFAA 4DO8A 2H64B 1FSSB 2BHIA 4ZQYA 2CTXA 2I9BE 1FFJA 2H7ZA 4BIKB 2H62D 2HLRA 1DRSA 2BTXA 1HOYA 1COEA 3LAQU 2H8UA 2X8BB 1JGKA 1LSIA 1FF4A 3VTSA 4AEAA 1BXPA 1CXOA 1CHVS 1MAHF 4HQPF 1KBSA 2UX2A 1CDSA 1TFSA 2CRSA 1VB0A 1HC9A 1JE9A 1L4WA 1QKEA 4RUDA 1KBTA 1ES7B 1NYUA 1ABTA 1REWC 1CDRA 1IDLA 1H0JA 5EBXA 1G6MA 2H64C 1NXBA 2CRTA 2PJYB 2NBTA 1ONJA 1PLOA 5DU1A 1KU6B 4OM4A 1NYSA 1LXHA 2LCRA 1NTXA 1HAJA 4P7UA 4BDTB 3BT2U 2OFSA 1CVOA 1KC4A 1CXNA 1YWHA 1XT3A 1CDQA 2MHYA 1BTEA 2MJYA 2J8BA 1CCQA 4EY8B 2CDXA 3QB4B 1I02A 1NEAA 3HH7A 2ERAA 2JQPA 3FEVA 4KSNA 1FASA 2MJ4A 1CRFA 1FRAA 2N99A 3BT1U 5IMTD 6EBXA 1IKCA 1CREA 2VLWA 1S4YA 1JBDA 1TXBA 1NTNA 2HLQA 1W6BA 2PJYC 1HAAA 3KFDE 4FAOE 5IMYC 1TXAA 2H5FA 1IDGA 1F94A 3EBXA 3PLCA 5DO6A 1UG4A 1IK8A 2GOOB 1CDTA 2UWRA 1CTXA 2ABXA 3NDSA 3NH7A 4IYEA 1B41B 1KXIA 1IDIA 1RGJA 5DZ5A 2H7ZB 2CCXA 1ERAA 3EVSC 1NORA 3KFDI 4LFTA 1IJCA 1F8UB 1LXGA 1M9ZA 2MJ0A 2MUOA 1KFHA 1KS6A 1KL8A 1IQ9A 1QKDA 2L03A 4XJJA
chains in the Genus database with same CATH topology
2MUPA 3U73U 4UY2C 1CODA 2K3GA 2L5SA 3U74U 2LA1A 2H62C 1RL5A 1LX5B 1HC9B 2QJ9C 3NEQA 1MR6A 2FD6U 2QC1A 3ERAA 1TGXA 2GOOC 4QTIU 1LJZA 4FAOC 1ZADA 2JVEA 1KBAA 1CB9A 1V6PA 2QJBC 4OM5A 2QJAC 1IDHA 1KTZB 1ERGA 1FSCA 1QM7A 2MFAA 4DO8A 2H64B 1FSSB 2BHIA 4ZQYA 2CTXA 2I9BE 1FFJA 2H7ZA 4BIKB 2H62D 2HLRA 1DRSA 2BTXA 1HOYA 1COEA 3LAQU 2H8UA 2X8BB 1JGKA 1LSIA 1FF4A 3VTSA 4AEAA 1BXPA 1CXOA 1CHVS 1MAHF 4HQPF 1KBSA 2UX2A 1CDSA 1TFSA 2CRSA 1VB0A 1HC9A 1JE9A 1L4WA 1QKEA 4RUDA 1KBTA 1ES7B 1NYUA 1ABTA 1REWC 1CDRA 1IDLA 1H0JA 5EBXA 1G6MA 2H64C 1NXBA 2CRTA 2PJYB 2NBTA 1ONJA 1PLOA 5DU1A 1KU6B 4OM4A 1NYSA 1LXHA 2LCRA 1NTXA 1HAJA 4P7UA 4BDTB 3BT2U 2OFSA 1CVOA 1KC4A 1CXNA 1YWHA 1XT3A 1CDQA 2MHYA 1BTEA 2MJYA 2J8BA 1CCQA 4EY8B 2CDXA 3QB4B 1I02A 1NEAA 3HH7A 2ERAA 2JQPA 3FEVA 4KSNA 1FASA 2MJ4A 1CRFA 1FRAA 2N99A 3BT1U 5IMTD 6EBXA 1IKCA 1CREA 2VLWA 1S4YA 1JBDA 1TXBA 1NTNA 2HLQA 1W6BA 2PJYC 1HAAA 3KFDE 4FAOE 5IMYC 1TXAA 2H5FA 1IDGA 1F94A 3EBXA 3PLCA 5DO6A 1UG4A 1IK8A 2GOOB 1CDTA 2UWRA 1CTXA 2ABXA 3NDSA 3NH7A 4IYEA 1B41B 1KXIA 1IDIA 1RGJA 5DZ5A 2H7ZB 2CCXA 1ERAA 3EVSC 1NORA 3KFDI 4LFTA 1IJCA 1F8UB 1LXGA 1M9ZA 2MJ0A 2MUOA 1KFHA 1KS6A 1KL8A 1IQ9A 1QKDA 2L03A 4XJJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MUP A;  3U73 U;  4UY2 C;  1COD A;  2K3G A;  2L5S A;  3U74 U;  2LA1 A;  2H62 C;  1RL5 A;  1LX5 B;  1HC9 B;  2QJ9 C;  3NEQ A;  1MR6 A;  2FD6 U;  2QC1 A;  3ERA A;  1TGX A;  2GOO C;  4QTI U;  1LJZ A;  4FAO C;  1ZAD A;  2JVE A;  1KBA A;  1CB9 A;  1V6P A;  2QJB C;  4OM5 A;  2QJA C;  1IDH A;  1KTZ B;  1ERG A;  1FSC A;  1QM7 A;  2MFA A;  4DO8 A;  2H64 B;  1FSS B;  2BHI A;  4ZQY A;  2CTX A;  2I9B E;  1FFJ A;  2H7Z A;  4BIK B;  2H62 D;  2HLR A;  1DRS A;  2BTX A;  1HOY A;  1COE A;  3LAQ U;  2H8U A;  2X8B B;  1JGK A;  1LSI A;  1FF4 A;  3VTS A;  4AEA A;  1BXP A;  1CXO A;  1CHV S;  1MAH F;  4HQP F;  1KBS A;  2UX2 A;  1CDS A;  1TFS A;  2CRS A;  1VB0 A;  1HC9 A;  1JE9 A;  1L4W A;  1QKE A;  4RUD A;  1KBT A;  1ES7 B;  1NYU A;  1ABT A;  1REW C;  1CDR A;  1IDL A;  1H0J A;  5EBX A;  1G6M A;  2H64 C;  1NXB A;  2CRT A;  2PJY B;  2NBT A;  1ONJ A;  1PLO A;  5DU1 A;  1KU6 B;  4OM4 A;  1NYS A;  1LXH A;  2LCR A;  1NTX A;  1HAJ A;  4P7U A;  4BDT B;  3BT2 U;  2OFS A;  1CVO A;  1KC4 A;  1CXN A;  1YWH A;  1XT3 A;  1CDQ A;  2MHY A;  1BTE A;  2MJY A;  2J8B A;  1CCQ A;  4EY8 B;  2CDX A;  3QB4 B;  1I02 A;  1NEA A;  3HH7 A;  2ERA A;  2JQP A;  3FEV A;  1FAS A;  2MJ4 A;  1CRF A;  1FRA A;  2N99 A;  3BT1 U;  5IMT D;  6EBX A;  1IKC A;  1CRE A;  2VLW A;  1S4Y A;  1JBD A;  1TXB A;  1NTN A;  2HLQ A;  1W6B A;  2PJY C;  1HAA A;  3KFD E;  4FAO E;  5IMY C;  1TXA A;  2H5F A;  1IDG A;  1F94 A;  3EBX A;  3PLC A;  5DO6 A;  1UG4 A;  1IK8 A;  2GOO B;  1CDT A;  2UWR A;  1CTX A;  2ABX A;  3NDS A;  3NH7 A;  4IYE A;  1B41 B;  1KXI A;  1IDI A;  1RGJ A;  5DZ5 A;  2H7Z B;  2CCX A;  1ERA A;  3EVS C;  1NOR A;  3KFD I;  4LFT A;  1IJC A;  1F8U B;  1LXG A;  1M9Z A;  2MJ0 A;  2MUO A;  1KFH A;  1KS6 A;  1KL8 A;  1IQ9 A;  1QKD A;  2L03 A;  4XJJ A; 
#chains in the Genus database with same CATH topology
 2MUP A;  3U73 U;  4UY2 C;  1COD A;  2K3G A;  2L5S A;  3U74 U;  2LA1 A;  2H62 C;  1RL5 A;  1LX5 B;  1HC9 B;  2QJ9 C;  3NEQ A;  1MR6 A;  2FD6 U;  2QC1 A;  3ERA A;  1TGX A;  2GOO C;  4QTI U;  1LJZ A;  4FAO C;  1ZAD A;  2JVE A;  1KBA A;  1CB9 A;  1V6P A;  2QJB C;  4OM5 A;  2QJA C;  1IDH A;  1KTZ B;  1ERG A;  1FSC A;  1QM7 A;  2MFA A;  4DO8 A;  2H64 B;  1FSS B;  2BHI A;  4ZQY A;  2CTX A;  2I9B E;  1FFJ A;  2H7Z A;  4BIK B;  2H62 D;  2HLR A;  1DRS A;  2BTX A;  1HOY A;  1COE A;  3LAQ U;  2H8U A;  2X8B B;  1JGK A;  1LSI A;  1FF4 A;  3VTS A;  4AEA A;  1BXP A;  1CXO A;  1CHV S;  1MAH F;  4HQP F;  1KBS A;  2UX2 A;  1CDS A;  1TFS A;  2CRS A;  1VB0 A;  1HC9 A;  1JE9 A;  1L4W A;  1QKE A;  4RUD A;  1KBT A;  1ES7 B;  1NYU A;  1ABT A;  1REW C;  1CDR A;  1IDL A;  1H0J A;  5EBX A;  1G6M A;  2H64 C;  1NXB A;  2CRT A;  2PJY B;  2NBT A;  1ONJ A;  1PLO A;  5DU1 A;  1KU6 B;  4OM4 A;  1NYS A;  1LXH A;  2LCR A;  1NTX A;  1HAJ A;  4P7U A;  4BDT B;  3BT2 U;  2OFS A;  1CVO A;  1KC4 A;  1CXN A;  1YWH A;  1XT3 A;  1CDQ A;  2MHY A;  1BTE A;  2MJY A;  2J8B A;  1CCQ A;  4EY8 B;  2CDX A;  3QB4 B;  1I02 A;  1NEA A;  3HH7 A;  2ERA A;  2JQP A;  3FEV A;  4KSN A;  1FAS A;  2MJ4 A;  1CRF A;  1FRA A;  2N99 A;  3BT1 U;  5IMT D;  6EBX A;  1IKC A;  1CRE A;  2VLW A;  1S4Y A;  1JBD A;  1TXB A;  1NTN A;  2HLQ A;  1W6B A;  2PJY C;  1HAA A;  3KFD E;  4FAO E;  5IMY C;  1TXA A;  2H5F A;  1IDG A;  1F94 A;  3EBX A;  3PLC A;  5DO6 A;  1UG4 A;  1IK8 A;  2GOO B;  1CDT A;  2UWR A;  1CTX A;  2ABX A;  3NDS A;  3NH7 A;  4IYE A;  1B41 B;  1KXI A;  1IDI A;  1RGJ A;  5DZ5 A;  2H7Z B;  2CCX A;  1ERA A;  3EVS C;  1NOR A;  3KFD I;  4LFT A;  1IJC A;  1F8U B;  1LXG A;  1M9Z A;  2MJ0 A;  2MUO A;  1KFH A;  1KS6 A;  1KL8 A;  1IQ9 A;  1QKD A;  2L03 A;  4XJJ A; 
#chains in the Genus database with same CATH homology
 2MUP A;  3U73 U;  4UY2 C;  1COD A;  2K3G A;  2L5S A;  3U74 U;  2LA1 A;  2H62 C;  1RL5 A;  1LX5 B;  1HC9 B;  2QJ9 C;  3NEQ A;  1MR6 A;  2FD6 U;  2QC1 A;  3ERA A;  1TGX A;  2GOO C;  4QTI U;  1LJZ A;  4FAO C;  1ZAD A;  2JVE A;  1KBA A;  1CB9 A;  1V6P A;  2QJB C;  4OM5 A;  2QJA C;  1IDH A;  1KTZ B;  1ERG A;  1FSC A;  1QM7 A;  2MFA A;  4DO8 A;  2H64 B;  1FSS B;  2BHI A;  4ZQY A;  2CTX A;  2I9B E;  1FFJ A;  2H7Z A;  4BIK B;  2H62 D;  2HLR A;  1DRS A;  2BTX A;  1HOY A;  1COE A;  3LAQ U;  2H8U A;  2X8B B;  1JGK A;  1LSI A;  1FF4 A;  3VTS A;  4AEA A;  1BXP A;  1CXO A;  1CHV S;  1MAH F;  4HQP F;  1KBS A;  2UX2 A;  1CDS A;  1TFS A;  2CRS A;  1VB0 A;  1HC9 A;  1JE9 A;  1L4W A;  1QKE A;  4RUD A;  1KBT A;  1ES7 B;  1NYU A;  1ABT A;  1REW C;  1CDR A;  1IDL A;  1H0J A;  5EBX A;  1G6M A;  2H64 C;  1NXB A;  2CRT A;  2PJY B;  2NBT A;  1ONJ A;  1PLO A;  5DU1 A;  1KU6 B;  4OM4 A;  1NYS A;  1LXH A;  2LCR A;  1NTX A;  1HAJ A;  4P7U A;  4BDT B;  3BT2 U;  2OFS A;  1CVO A;  1KC4 A;  1CXN A;  1YWH A;  1XT3 A;  1CDQ A;  2MHY A;  1BTE A;  2MJY A;  2J8B A;  1CCQ A;  4EY8 B;  2CDX A;  3QB4 B;  1I02 A;  1NEA A;  3HH7 A;  2ERA A;  2JQP A;  3FEV A;  4KSN A;  1FAS A;  2MJ4 A;  1CRF A;  1FRA A;  2N99 A;  3BT1 U;  5IMT D;  6EBX A;  1IKC A;  1CRE A;  2VLW A;  1S4Y A;  1JBD A;  1TXB A;  1NTN A;  2HLQ A;  1W6B A;  2PJY C;  1HAA A;  3KFD E;  4FAO E;  5IMY C;  1TXA A;  2H5F A;  1IDG A;  1F94 A;  3EBX A;  3PLC A;  5DO6 A;  1UG4 A;  1IK8 A;  2GOO B;  1CDT A;  2UWR A;  1CTX A;  2ABX A;  3NDS A;  3NH7 A;  4IYE A;  1B41 B;  1KXI A;  1IDI A;  1RGJ A;  5DZ5 A;  2H7Z B;  2CCX A;  1ERA A;  3EVS C;  1NOR A;  3KFD I;  4LFT A;  1IJC A;  1F8U B;  1LXG A;  1M9Z A;  2MJ0 A;  2MUO A;  1KFH A;  1KS6 A;  1KL8 A;  1IQ9 A;  1QKD A;  2L03 A;  4XJJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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