1CXOA

Refined three-dimensional solution structure of a snake cardiotoxin: analysis of the side-chain organisation suggests the existence of a possible phospholipid binding site
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
LKCNQLIPPFWKTCPKGKNLCYKMTMRAAPMVPVKRGCIDVCPKSSLLIKYMCCNTDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytotoxin
molecule keywords CARDIOTOXIN GAMMA
publication title Refined three-dimensional solution structure of a snake cardiotoxin: analysis of the side-chain organization suggests the existence of a possible phospholipid binding site.
pubmed doi rcsb
source organism Naja nigricollis
total genus 9
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 1994-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1cxoA00
2J8BA 1KU6B 1ONJA 2OFSA 1CTXA 2QC1A 1NTNA 2VLWA 1IKCA 1JE9A 4HQPF 3KFDE 1HAJA 2H8UA 2N99A 1PLOA 1IDHA 1CDTA 2H64C 2QJBC 4ZQYA 1FSSB 1FASA 2MJ0A 1TXBA 2UX2A 1BTEA 1CREA 4QTIU 1V6PA 2I9BE 5IMTD 3LAQU 2PJYC 2HLQA 2MHYA 3KFDI 1B41B 1CVOA 1KS6A 1TXAA 3EBXA 4AEAA 1QKEA 4XJJA 1KC4A 2UWRA 1ZADA 5DZ5A 1I02A 1FSCA 1DRSA 2PJYB 1CHVS 2L03A 1IJCA 2H7ZA 2QJAC 3NEQA 1JGKA 1CRFA 1REWC 1MR6A 2X8BB 4FAOC 4DO8A 1CXOA 5DO6A 3QB4B 3ERAA 3BT2U 3NH7A 1RGJA 1NORA 2JVEA 4EY8B 1VB0A 2LCRA 1COEA 2K3GA 4OM5A 1CDSA 6EBXA 4UY2C 2CCXA 1NEAA 1F94A 2MFAA 1YWHA 1NYUA 1S4YA 1HC9A 3U74U 1RL5A 2MUPA 2HLRA 2H7ZB 1MAHF 1FRAA 1IDGA 1FF4A 5DU1A 1NTXA 1W6BA 1IDLA 1LSIA 3BT1U 3NDSA 1M9ZA 1CODA 1LXHA 2H62D 1HOYA 1UG4A 2CDXA 2GOOC 5EBXA 2FD6U 1ERGA 1ES7B 1BXPA 1IDIA 1KXIA 1XT3A 4RUDA 2MJYA 3EVSC 2NBTA 4FAOE 1FFJA 2CTXA 1F8UB 2BHIA 2GOOB 4IYEA 1CDQA 1ABTA 1CDRA 2ABXA 1IQ9A 1G6MA 5IMYC 1KBTA 1HAAA 2CRTA 4BIKB 1CB9A 2BTXA 1CXNA 3U73U 4P7UA 3VTSA 1NXBA 1L4WA 1KFHA 2CRSA 1KBAA 3FEVA 2MUOA 1NYSA 1LXGA 2JQPA 3HH7A 1QKDA 1JBDA 1HC9B 1KBSA 2L5SA 1TFSA 2LA1A 1KTZB 4LFTA 2ERAA 1CCQA 3PLCA 4OM4A 1LJZA 2H5FA 1KL8A 2H64B 1H0JA 1LX5B 1ERAA 1IK8A 4BDTB 2MJ4A 1TGXA 2QJ9C 2H62C 1QM7A
chains in the Genus database with same CATH superfamily
2J8BA 1KU6B 1ONJA 2OFSA 1CTXA 2QC1A 1NTNA 2VLWA 1IKCA 1JE9A 4HQPF 3KFDE 1HAJA 2H8UA 2N99A 1PLOA 1IDHA 1CDTA 2H64C 2QJBC 4ZQYA 1FSSB 1FASA 2MJ0A 1TXBA 2UX2A 1BTEA 4KSNA 1CREA 4QTIU 1V6PA 2I9BE 5IMTD 3LAQU 2PJYC 2HLQA 2MHYA 3KFDI 1B41B 1CVOA 1KS6A 1TXAA 3EBXA 4AEAA 1QKEA 4XJJA 1KC4A 2UWRA 1ZADA 5DZ5A 1I02A 1FSCA 1DRSA 2PJYB 1CHVS 2L03A 1IJCA 2H7ZA 2QJAC 3NEQA 1JGKA 1CRFA 1REWC 1MR6A 2X8BB 4FAOC 4DO8A 1CXOA 5DO6A 3QB4B 3ERAA 3BT2U 3NH7A 1RGJA 1NORA 2JVEA 4EY8B 1VB0A 2LCRA 1COEA 2K3GA 4OM5A 1CDSA 6EBXA 4UY2C 2CCXA 1NEAA 1F94A 2MFAA 1YWHA 1NYUA 1S4YA 1HC9A 3U74U 1RL5A 2MUPA 2HLRA 2H7ZB 1MAHF 1FRAA 1IDGA 1FF4A 5DU1A 1NTXA 1W6BA 1IDLA 1LSIA 3BT1U 3NDSA 1M9ZA 1CODA 1LXHA 2H62D 1HOYA 1UG4A 2CDXA 2GOOC 5EBXA 2FD6U 1ERGA 1ES7B 1BXPA 1IDIA 1KXIA 1XT3A 4RUDA 2MJYA 3EVSC 2NBTA 4FAOE 1FFJA 2CTXA 1F8UB 2BHIA 2GOOB 4IYEA 1CDQA 1ABTA 1CDRA 2ABXA 1IQ9A 1G6MA 5IMYC 1KBTA 1HAAA 2CRTA 4BIKB 1CB9A 2BTXA 1CXNA 3U73U 4P7UA 3VTSA 1NXBA 1L4WA 1KFHA 2CRSA 1KBAA 3FEVA 2MUOA 1NYSA 1LXGA 2JQPA 3HH7A 1QKDA 1JBDA 1HC9B 1KBSA 2L5SA 1TFSA 2LA1A 1KTZB 4LFTA 2ERAA 1CCQA 3PLCA 4OM4A 1LJZA 2H5FA 1KL8A 2H64B 1H0JA 1LX5B 1ERAA 1IK8A 4BDTB 2MJ4A 1TGXA 2QJ9C 2H62C 1QM7A
chains in the Genus database with same CATH topology
2J8BA 1KU6B 1ONJA 2OFSA 1CTXA 2QC1A 1NTNA 2VLWA 1IKCA 1JE9A 4HQPF 3KFDE 1HAJA 2H8UA 2N99A 1PLOA 1IDHA 1CDTA 2H64C 2QJBC 4ZQYA 1FSSB 1FASA 2MJ0A 1TXBA 2UX2A 1BTEA 4KSNA 1CREA 4QTIU 1V6PA 2I9BE 5IMTD 3LAQU 2PJYC 2HLQA 2MHYA 3KFDI 1B41B 1CVOA 1KS6A 1TXAA 3EBXA 4AEAA 1QKEA 4XJJA 1KC4A 2UWRA 1ZADA 5DZ5A 1I02A 1FSCA 1DRSA 2PJYB 1CHVS 2L03A 1IJCA 2H7ZA 2QJAC 3NEQA 1JGKA 1CRFA 1REWC 1MR6A 2X8BB 4FAOC 4DO8A 1CXOA 5DO6A 3QB4B 3ERAA 3BT2U 3NH7A 1RGJA 1NORA 2JVEA 4EY8B 1VB0A 2LCRA 1COEA 2K3GA 4OM5A 1CDSA 6EBXA 4UY2C 2CCXA 1NEAA 1F94A 2MFAA 1YWHA 1NYUA 1S4YA 1HC9A 3U74U 1RL5A 2MUPA 2HLRA 2H7ZB 1MAHF 1FRAA 1IDGA 1FF4A 5DU1A 1NTXA 1W6BA 1IDLA 1LSIA 3BT1U 3NDSA 1M9ZA 1CODA 1LXHA 2H62D 1HOYA 1UG4A 2CDXA 2GOOC 5EBXA 2FD6U 1ERGA 1ES7B 1BXPA 1IDIA 1KXIA 1XT3A 4RUDA 2MJYA 3EVSC 2NBTA 4FAOE 1FFJA 2CTXA 1F8UB 2BHIA 2GOOB 4IYEA 1CDQA 1ABTA 1CDRA 2ABXA 1IQ9A 1G6MA 5IMYC 1KBTA 1HAAA 2CRTA 4BIKB 1CB9A 2BTXA 1CXNA 3U73U 4P7UA 3VTSA 1NXBA 1L4WA 1KFHA 2CRSA 1KBAA 3FEVA 2MUOA 1NYSA 1LXGA 2JQPA 3HH7A 1QKDA 1JBDA 1HC9B 1KBSA 2L5SA 1TFSA 2LA1A 1KTZB 4LFTA 2ERAA 1CCQA 3PLCA 4OM4A 1LJZA 2H5FA 1KL8A 2H64B 1H0JA 1LX5B 1ERAA 1IK8A 4BDTB 2MJ4A 1TGXA 2QJ9C 2H62C 1QM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2J8B A;  1KU6 B;  1ONJ A;  2OFS A;  1CTX A;  2QC1 A;  1NTN A;  2VLW A;  1IKC A;  1JE9 A;  4HQP F;  3KFD E;  1HAJ A;  2H8U A;  2N99 A;  1PLO A;  1IDH A;  1CDT A;  2H64 C;  2QJB C;  4ZQY A;  1FSS B;  1FAS A;  2MJ0 A;  1TXB A;  2UX2 A;  1BTE A;  1CRE A;  4QTI U;  1V6P A;  2I9B E;  5IMT D;  3LAQ U;  2PJY C;  2HLQ A;  2MHY A;  3KFD I;  1B41 B;  1CVO A;  1KS6 A;  1TXA A;  3EBX A;  4AEA A;  1QKE A;  4XJJ A;  1KC4 A;  2UWR A;  1ZAD A;  5DZ5 A;  1I02 A;  1FSC A;  1DRS A;  2PJY B;  1CHV S;  2L03 A;  1IJC A;  2H7Z A;  2QJA C;  3NEQ A;  1JGK A;  1CRF A;  1REW C;  1MR6 A;  2X8B B;  4FAO C;  4DO8 A;  1CXO A;  5DO6 A;  3QB4 B;  3ERA A;  3BT2 U;  3NH7 A;  1RGJ A;  1NOR A;  2JVE A;  4EY8 B;  1VB0 A;  2LCR A;  1COE A;  2K3G A;  4OM5 A;  1CDS A;  6EBX A;  4UY2 C;  2CCX A;  1NEA A;  1F94 A;  2MFA A;  1YWH A;  1NYU A;  1S4Y A;  1HC9 A;  3U74 U;  1RL5 A;  2MUP A;  2HLR A;  2H7Z B;  1MAH F;  1FRA A;  1IDG A;  1FF4 A;  5DU1 A;  1NTX A;  1W6B A;  1IDL A;  1LSI A;  3BT1 U;  3NDS A;  1M9Z A;  1COD A;  1LXH A;  2H62 D;  1HOY A;  1UG4 A;  2CDX A;  2GOO C;  5EBX A;  2FD6 U;  1ERG A;  1ES7 B;  1BXP A;  1IDI A;  1KXI A;  1XT3 A;  4RUD A;  2MJY A;  3EVS C;  2NBT A;  4FAO E;  1FFJ A;  2CTX A;  1F8U B;  2BHI A;  2GOO B;  4IYE A;  1CDQ A;  1ABT A;  1CDR A;  2ABX A;  1IQ9 A;  1G6M A;  5IMY C;  1KBT A;  1HAA A;  2CRT A;  4BIK B;  1CB9 A;  2BTX A;  1CXN A;  3U73 U;  4P7U A;  3VTS A;  1NXB A;  1L4W A;  1KFH A;  2CRS A;  1KBA A;  3FEV A;  2MUO A;  1NYS A;  1LXG A;  2JQP A;  3HH7 A;  1QKD A;  1JBD A;  1HC9 B;  1KBS A;  2L5S A;  1TFS A;  2LA1 A;  1KTZ B;  4LFT A;  2ERA A;  1CCQ A;  3PLC A;  4OM4 A;  1LJZ A;  2H5F A;  1KL8 A;  2H64 B;  1H0J A;  1LX5 B;  1ERA A;  1IK8 A;  4BDT B;  2MJ4 A;  1TGX A;  2QJ9 C;  2H62 C;  1QM7 A; 
#chains in the Genus database with same CATH topology
 2J8B A;  1KU6 B;  1ONJ A;  2OFS A;  1CTX A;  2QC1 A;  1NTN A;  2VLW A;  1IKC A;  1JE9 A;  4HQP F;  3KFD E;  1HAJ A;  2H8U A;  2N99 A;  1PLO A;  1IDH A;  1CDT A;  2H64 C;  2QJB C;  4ZQY A;  1FSS B;  1FAS A;  2MJ0 A;  1TXB A;  2UX2 A;  1BTE A;  4KSN A;  1CRE A;  4QTI U;  1V6P A;  2I9B E;  5IMT D;  3LAQ U;  2PJY C;  2HLQ A;  2MHY A;  3KFD I;  1B41 B;  1CVO A;  1KS6 A;  1TXA A;  3EBX A;  4AEA A;  1QKE A;  4XJJ A;  1KC4 A;  2UWR A;  1ZAD A;  5DZ5 A;  1I02 A;  1FSC A;  1DRS A;  2PJY B;  1CHV S;  2L03 A;  1IJC A;  2H7Z A;  2QJA C;  3NEQ A;  1JGK A;  1CRF A;  1REW C;  1MR6 A;  2X8B B;  4FAO C;  4DO8 A;  1CXO A;  5DO6 A;  3QB4 B;  3ERA A;  3BT2 U;  3NH7 A;  1RGJ A;  1NOR A;  2JVE A;  4EY8 B;  1VB0 A;  2LCR A;  1COE A;  2K3G A;  4OM5 A;  1CDS A;  6EBX A;  4UY2 C;  2CCX A;  1NEA A;  1F94 A;  2MFA A;  1YWH A;  1NYU A;  1S4Y A;  1HC9 A;  3U74 U;  1RL5 A;  2MUP A;  2HLR A;  2H7Z B;  1MAH F;  1FRA A;  1IDG A;  1FF4 A;  5DU1 A;  1NTX A;  1W6B A;  1IDL A;  1LSI A;  3BT1 U;  3NDS A;  1M9Z A;  1COD A;  1LXH A;  2H62 D;  1HOY A;  1UG4 A;  2CDX A;  2GOO C;  5EBX A;  2FD6 U;  1ERG A;  1ES7 B;  1BXP A;  1IDI A;  1KXI A;  1XT3 A;  4RUD A;  2MJY A;  3EVS C;  2NBT A;  4FAO E;  1FFJ A;  2CTX A;  1F8U B;  2BHI A;  2GOO B;  4IYE A;  1CDQ A;  1ABT A;  1CDR A;  2ABX A;  1IQ9 A;  1G6M A;  5IMY C;  1KBT A;  1HAA A;  2CRT A;  4BIK B;  1CB9 A;  2BTX A;  1CXN A;  3U73 U;  4P7U A;  3VTS A;  1NXB A;  1L4W A;  1KFH A;  2CRS A;  1KBA A;  3FEV A;  2MUO A;  1NYS A;  1LXG A;  2JQP A;  3HH7 A;  1QKD A;  1JBD A;  1HC9 B;  1KBS A;  2L5S A;  1TFS A;  2LA1 A;  1KTZ B;  4LFT A;  2ERA A;  1CCQ A;  3PLC A;  4OM4 A;  1LJZ A;  2H5F A;  1KL8 A;  2H64 B;  1H0J A;  1LX5 B;  1ERA A;  1IK8 A;  4BDT B;  2MJ4 A;  1TGX A;  2QJ9 C;  2H62 C;  1QM7 A; 
#chains in the Genus database with same CATH homology
 2J8B A;  1KU6 B;  1ONJ A;  2OFS A;  1CTX A;  2QC1 A;  1NTN A;  2VLW A;  1IKC A;  1JE9 A;  4HQP F;  3KFD E;  1HAJ A;  2H8U A;  2N99 A;  1PLO A;  1IDH A;  1CDT A;  2H64 C;  2QJB C;  4ZQY A;  1FSS B;  1FAS A;  2MJ0 A;  1TXB A;  2UX2 A;  1BTE A;  4KSN A;  1CRE A;  4QTI U;  1V6P A;  2I9B E;  5IMT D;  3LAQ U;  2PJY C;  2HLQ A;  2MHY A;  3KFD I;  1B41 B;  1CVO A;  1KS6 A;  1TXA A;  3EBX A;  4AEA A;  1QKE A;  4XJJ A;  1KC4 A;  2UWR A;  1ZAD A;  5DZ5 A;  1I02 A;  1FSC A;  1DRS A;  2PJY B;  1CHV S;  2L03 A;  1IJC A;  2H7Z A;  2QJA C;  3NEQ A;  1JGK A;  1CRF A;  1REW C;  1MR6 A;  2X8B B;  4FAO C;  4DO8 A;  1CXO A;  5DO6 A;  3QB4 B;  3ERA A;  3BT2 U;  3NH7 A;  1RGJ A;  1NOR A;  2JVE A;  4EY8 B;  1VB0 A;  2LCR A;  1COE A;  2K3G A;  4OM5 A;  1CDS A;  6EBX A;  4UY2 C;  2CCX A;  1NEA A;  1F94 A;  2MFA A;  1YWH A;  1NYU A;  1S4Y A;  1HC9 A;  3U74 U;  1RL5 A;  2MUP A;  2HLR A;  2H7Z B;  1MAH F;  1FRA A;  1IDG A;  1FF4 A;  5DU1 A;  1NTX A;  1W6B A;  1IDL A;  1LSI A;  3BT1 U;  3NDS A;  1M9Z A;  1COD A;  1LXH A;  2H62 D;  1HOY A;  1UG4 A;  2CDX A;  2GOO C;  5EBX A;  2FD6 U;  1ERG A;  1ES7 B;  1BXP A;  1IDI A;  1KXI A;  1XT3 A;  4RUD A;  2MJY A;  3EVS C;  2NBT A;  4FAO E;  1FFJ A;  2CTX A;  1F8U B;  2BHI A;  2GOO B;  4IYE A;  1CDQ A;  1ABT A;  1CDR A;  2ABX A;  1IQ9 A;  1G6M A;  5IMY C;  1KBT A;  1HAA A;  2CRT A;  4BIK B;  1CB9 A;  2BTX A;  1CXN A;  3U73 U;  4P7U A;  3VTS A;  1NXB A;  1L4W A;  1KFH A;  2CRS A;  1KBA A;  3FEV A;  2MUO A;  1NYS A;  1LXG A;  2JQP A;  3HH7 A;  1QKD A;  1JBD A;  1HC9 B;  1KBS A;  2L5S A;  1TFS A;  2LA1 A;  1KTZ B;  4LFT A;  2ERA A;  1CCQ A;  3PLC A;  4OM4 A;  1LJZ A;  2H5F A;  1KL8 A;  2H64 B;  1H0J A;  1LX5 B;  1ERA A;  1IK8 A;  4BDT B;  2MJ4 A;  1TGX A;  2QJ9 C;  2H62 C;  1QM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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