4RUDA

Crystal structure of a three finger toxin
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
58
structure length
58
Chain Sequence
LKCYSSRTETMTCPEGEDKCEKYAVGLMHGSFFFIYTCTSKCHEGAYNVCCSTDLCNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Three-finger toxin 3b
publication title Crystal structure of a three finger toxin from M fulvius
rcsb
molecule tags Toxin
total genus 9
structure length 58
sequence length 58
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-11-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 4rudA00
1LJZA 1JBDA 2CRSA 2N99A 2CTXA 2H64C 1KBSA 2UWRA 1MR6A 2VLWA 2J8BA 5DZ5A 4BIKB 3KFDI 1COEA 1CXOA 1CVOA 5DU1A 1HAAA 2HLRA 4IYEA 3BT2U 1CODA 2HLQA 2MJ4A 1IDGA 1TXAA 1KTZB 3NH7A 1F8UB 2JQPA 1ERGA 2QC1A 3U74U 1IQ9A 2LCRA 1NYSA 1REWC 1IK8A 4BDTB 1ERAA 1FFJA 4XJJA 2H5FA 2CRTA 2CDXA 2CCXA 2H7ZB 4RUDA 1KBAA 1JE9A 2H8UA 2I9BE 2PJYC 2H62C 2H62D 3HH7A 1TFSA 2BHIA 4P7UA 1QKDA 1ZADA 1IDIA 2GOOB 1NEAA 4UY2C 1CHVS 5EBXA 3FEVA 4EY8B 1CXNA 1KBTA 1ONJA 1DRSA 2ABXA 3EVSC 1PLOA 1FRAA 1S4YA 3NEQA 1H0JA 3KFDE 1NYUA 1QM7A 4DO8A 2H64B 1L4WA 1HOYA 2X8BB 1CB9A 2MUOA 5DO6A 3LAQU 1FF4A 1HC9A 1ABTA 1CREA 1KU6B 1HAJA 1NTNA 2QJBC 1IJCA 1CDSA 1FSSB 2UX2A 5IMTD 1BXPA 4AEAA 2FD6U 1CDQA 1KS6A 1CTXA 5IMYC 1MAHF 1LXGA 2NBTA 3NDSA 1KL8A 1KXIA 1XT3A 1G6MA 1I02A 1NTXA 1RL5A 2QJAC 2QJ9C 6EBXA 2MFAA 2K3GA 1NORA 2PJYB 4OM4A 1ES7B 3U73U 2ERAA 1CCQA 4FAOE 4LFTA 1CDTA 1NXBA 2OFSA 1QKEA 1FASA 1YWHA 1KC4A 1BTEA 2JVEA 1F94A 4QTIU 2L5SA 4FAOC 2MUPA 2MHYA 1V6PA 1HC9B 2LA1A 2MJYA 1IKCA 1JGKA 1CRFA 1LX5B 1FSCA 1RGJA 1IDHA 4OM5A 1VB0A 3VTSA 1LSIA 1B41B 3BT1U 2MJ0A 2L03A 3PLCA 1TGXA 1TXBA 1M9ZA 1UG4A 1CDRA 1LXHA 2BTXA 3ERAA 3QB4B 1W6BA 2GOOC 2H7ZA 4HQPF 1IDLA 3EBXA 4ZQYA 1KFHA
chains in the Genus database with same CATH superfamily
1LJZA 1JBDA 2CRSA 2N99A 2CTXA 2H64C 1KBSA 2UWRA 1MR6A 2VLWA 2J8BA 5DZ5A 4BIKB 3KFDI 1COEA 1CXOA 1CVOA 5DU1A 1HAAA 2HLRA 4IYEA 3BT2U 1CODA 2HLQA 2MJ4A 1IDGA 1TXAA 1KTZB 3NH7A 1F8UB 2JQPA 1ERGA 2QC1A 3U74U 1IQ9A 2LCRA 1NYSA 1REWC 1IK8A 4BDTB 1ERAA 1FFJA 4XJJA 2H5FA 2CRTA 2CDXA 2CCXA 2H7ZB 4RUDA 1KBAA 1JE9A 2H8UA 2I9BE 2PJYC 2H62C 2H62D 3HH7A 1TFSA 2BHIA 4P7UA 1QKDA 1ZADA 1IDIA 2GOOB 1NEAA 4UY2C 1CHVS 5EBXA 3FEVA 4EY8B 1CXNA 1KBTA 1ONJA 1DRSA 2ABXA 3EVSC 1PLOA 1FRAA 1S4YA 3NEQA 1H0JA 3KFDE 1NYUA 1QM7A 4DO8A 2H64B 1L4WA 1HOYA 2X8BB 1CB9A 2MUOA 5DO6A 3LAQU 1FF4A 1HC9A 1ABTA 1CREA 1KU6B 1HAJA 1NTNA 2QJBC 1IJCA 1CDSA 1FSSB 2UX2A 5IMTD 1BXPA 4AEAA 2FD6U 1CDQA 1KS6A 1CTXA 5IMYC 1MAHF 1LXGA 2NBTA 3NDSA 1KL8A 1KXIA 1XT3A 1G6MA 1I02A 1NTXA 1RL5A 2QJAC 2QJ9C 6EBXA 2MFAA 2K3GA 1NORA 2PJYB 4OM4A 1ES7B 4KSNA 3U73U 2ERAA 1CCQA 4FAOE 4LFTA 1CDTA 1NXBA 2OFSA 1QKEA 1FASA 1YWHA 1KC4A 1BTEA 2JVEA 1F94A 4QTIU 2L5SA 4FAOC 2MUPA 2MHYA 1V6PA 1HC9B 2LA1A 2MJYA 1IKCA 1JGKA 1CRFA 1LX5B 1FSCA 1RGJA 1IDHA 4OM5A 1VB0A 3VTSA 1LSIA 1B41B 3BT1U 2MJ0A 2L03A 3PLCA 1TGXA 1TXBA 1M9ZA 1UG4A 1CDRA 1LXHA 2BTXA 3ERAA 3QB4B 1W6BA 2GOOC 2H7ZA 4HQPF 1IDLA 3EBXA 4ZQYA 1KFHA
chains in the Genus database with same CATH topology
1LJZA 1JBDA 2CRSA 2N99A 2CTXA 2H64C 1KBSA 2UWRA 1MR6A 2VLWA 2J8BA 5DZ5A 4BIKB 3KFDI 1COEA 1CXOA 1CVOA 5DU1A 1HAAA 2HLRA 4IYEA 3BT2U 1CODA 2HLQA 2MJ4A 1IDGA 1TXAA 1KTZB 3NH7A 1F8UB 2JQPA 1ERGA 2QC1A 3U74U 1IQ9A 2LCRA 1NYSA 1REWC 1IK8A 4BDTB 1ERAA 1FFJA 4XJJA 2H5FA 2CRTA 2CDXA 2CCXA 2H7ZB 4RUDA 1KBAA 1JE9A 2H8UA 2I9BE 2PJYC 2H62C 2H62D 3HH7A 1TFSA 2BHIA 4P7UA 1QKDA 1ZADA 1IDIA 2GOOB 1NEAA 4UY2C 1CHVS 5EBXA 3FEVA 4EY8B 1CXNA 1KBTA 1ONJA 1DRSA 2ABXA 3EVSC 1PLOA 1FRAA 1S4YA 3NEQA 1H0JA 3KFDE 1NYUA 1QM7A 4DO8A 2H64B 1L4WA 1HOYA 2X8BB 1CB9A 2MUOA 5DO6A 3LAQU 1FF4A 1HC9A 1ABTA 1CREA 1KU6B 1HAJA 1NTNA 2QJBC 1IJCA 1CDSA 1FSSB 2UX2A 5IMTD 1BXPA 4AEAA 2FD6U 1CDQA 1KS6A 1CTXA 5IMYC 1MAHF 1LXGA 2NBTA 3NDSA 1KL8A 1KXIA 1XT3A 1G6MA 1I02A 1NTXA 1RL5A 2QJAC 2QJ9C 6EBXA 2MFAA 2K3GA 1NORA 2PJYB 4OM4A 1ES7B 4KSNA 3U73U 2ERAA 1CCQA 4FAOE 4LFTA 1CDTA 1NXBA 2OFSA 1QKEA 1FASA 1YWHA 1KC4A 1BTEA 2JVEA 1F94A 4QTIU 2L5SA 4FAOC 2MUPA 2MHYA 1V6PA 1HC9B 2LA1A 2MJYA 1IKCA 1JGKA 1CRFA 1LX5B 1FSCA 1RGJA 1IDHA 4OM5A 1VB0A 3VTSA 1LSIA 1B41B 3BT1U 2MJ0A 2L03A 3PLCA 1TGXA 1TXBA 1M9ZA 1UG4A 1CDRA 1LXHA 2BTXA 3ERAA 3QB4B 1W6BA 2GOOC 2H7ZA 4HQPF 1IDLA 3EBXA 4ZQYA 1KFHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LJZ A;  1JBD A;  2CRS A;  2N99 A;  2CTX A;  2H64 C;  1KBS A;  2UWR A;  1MR6 A;  2VLW A;  2J8B A;  5DZ5 A;  4BIK B;  3KFD I;  1COE A;  1CXO A;  1CVO A;  5DU1 A;  1HAA A;  2HLR A;  4IYE A;  3BT2 U;  1COD A;  2HLQ A;  2MJ4 A;  1IDG A;  1TXA A;  1KTZ B;  3NH7 A;  1F8U B;  2JQP A;  1ERG A;  2QC1 A;  3U74 U;  1IQ9 A;  2LCR A;  1NYS A;  1REW C;  1IK8 A;  4BDT B;  1ERA A;  1FFJ A;  4XJJ A;  2H5F A;  2CRT A;  2CDX A;  2CCX A;  2H7Z B;  4RUD A;  1KBA A;  1JE9 A;  2H8U A;  2I9B E;  2PJY C;  2H62 C;  2H62 D;  3HH7 A;  1TFS A;  2BHI A;  4P7U A;  1QKD A;  1ZAD A;  1IDI A;  2GOO B;  1NEA A;  4UY2 C;  1CHV S;  5EBX A;  3FEV A;  4EY8 B;  1CXN A;  1KBT A;  1ONJ A;  1DRS A;  2ABX A;  3EVS C;  1PLO A;  1FRA A;  1S4Y A;  3NEQ A;  1H0J A;  3KFD E;  1NYU A;  1QM7 A;  4DO8 A;  2H64 B;  1L4W A;  1HOY A;  2X8B B;  1CB9 A;  2MUO A;  5DO6 A;  3LAQ U;  1FF4 A;  1HC9 A;  1ABT A;  1CRE A;  1KU6 B;  1HAJ A;  1NTN A;  2QJB C;  1IJC A;  1CDS A;  1FSS B;  2UX2 A;  5IMT D;  1BXP A;  4AEA A;  2FD6 U;  1CDQ A;  1KS6 A;  1CTX A;  5IMY C;  1MAH F;  1LXG A;  2NBT A;  3NDS A;  1KL8 A;  1KXI A;  1XT3 A;  1G6M A;  1I02 A;  1NTX A;  1RL5 A;  2QJA C;  2QJ9 C;  6EBX A;  2MFA A;  2K3G A;  1NOR A;  2PJY B;  4OM4 A;  1ES7 B;  3U73 U;  2ERA A;  1CCQ A;  4FAO E;  4LFT A;  1CDT A;  1NXB A;  2OFS A;  1QKE A;  1FAS A;  1YWH A;  1KC4 A;  1BTE A;  2JVE A;  1F94 A;  4QTI U;  2L5S A;  4FAO C;  2MUP A;  2MHY A;  1V6P A;  1HC9 B;  2LA1 A;  2MJY A;  1IKC A;  1JGK A;  1CRF A;  1LX5 B;  1FSC A;  1RGJ A;  1IDH A;  4OM5 A;  1VB0 A;  3VTS A;  1LSI A;  1B41 B;  3BT1 U;  2MJ0 A;  2L03 A;  3PLC A;  1TGX A;  1TXB A;  1M9Z A;  1UG4 A;  1CDR A;  1LXH A;  2BTX A;  3ERA A;  3QB4 B;  1W6B A;  2GOO C;  2H7Z A;  4HQP F;  1IDL A;  3EBX A;  4ZQY A;  1KFH A; 
#chains in the Genus database with same CATH topology
 1LJZ A;  1JBD A;  2CRS A;  2N99 A;  2CTX A;  2H64 C;  1KBS A;  2UWR A;  1MR6 A;  2VLW A;  2J8B A;  5DZ5 A;  4BIK B;  3KFD I;  1COE A;  1CXO A;  1CVO A;  5DU1 A;  1HAA A;  2HLR A;  4IYE A;  3BT2 U;  1COD A;  2HLQ A;  2MJ4 A;  1IDG A;  1TXA A;  1KTZ B;  3NH7 A;  1F8U B;  2JQP A;  1ERG A;  2QC1 A;  3U74 U;  1IQ9 A;  2LCR A;  1NYS A;  1REW C;  1IK8 A;  4BDT B;  1ERA A;  1FFJ A;  4XJJ A;  2H5F A;  2CRT A;  2CDX A;  2CCX A;  2H7Z B;  4RUD A;  1KBA A;  1JE9 A;  2H8U A;  2I9B E;  2PJY C;  2H62 C;  2H62 D;  3HH7 A;  1TFS A;  2BHI A;  4P7U A;  1QKD A;  1ZAD A;  1IDI A;  2GOO B;  1NEA A;  4UY2 C;  1CHV S;  5EBX A;  3FEV A;  4EY8 B;  1CXN A;  1KBT A;  1ONJ A;  1DRS A;  2ABX A;  3EVS C;  1PLO A;  1FRA A;  1S4Y A;  3NEQ A;  1H0J A;  3KFD E;  1NYU A;  1QM7 A;  4DO8 A;  2H64 B;  1L4W A;  1HOY A;  2X8B B;  1CB9 A;  2MUO A;  5DO6 A;  3LAQ U;  1FF4 A;  1HC9 A;  1ABT A;  1CRE A;  1KU6 B;  1HAJ A;  1NTN A;  2QJB C;  1IJC A;  1CDS A;  1FSS B;  2UX2 A;  5IMT D;  1BXP A;  4AEA A;  2FD6 U;  1CDQ A;  1KS6 A;  1CTX A;  5IMY C;  1MAH F;  1LXG A;  2NBT A;  3NDS A;  1KL8 A;  1KXI A;  1XT3 A;  1G6M A;  1I02 A;  1NTX A;  1RL5 A;  2QJA C;  2QJ9 C;  6EBX A;  2MFA A;  2K3G A;  1NOR A;  2PJY B;  4OM4 A;  1ES7 B;  4KSN A;  3U73 U;  2ERA A;  1CCQ A;  4FAO E;  4LFT A;  1CDT A;  1NXB A;  2OFS A;  1QKE A;  1FAS A;  1YWH A;  1KC4 A;  1BTE A;  2JVE A;  1F94 A;  4QTI U;  2L5S A;  4FAO C;  2MUP A;  2MHY A;  1V6P A;  1HC9 B;  2LA1 A;  2MJY A;  1IKC A;  1JGK A;  1CRF A;  1LX5 B;  1FSC A;  1RGJ A;  1IDH A;  4OM5 A;  1VB0 A;  3VTS A;  1LSI A;  1B41 B;  3BT1 U;  2MJ0 A;  2L03 A;  3PLC A;  1TGX A;  1TXB A;  1M9Z A;  1UG4 A;  1CDR A;  1LXH A;  2BTX A;  3ERA A;  3QB4 B;  1W6B A;  2GOO C;  2H7Z A;  4HQP F;  1IDL A;  3EBX A;  4ZQY A;  1KFH A; 
#chains in the Genus database with same CATH homology
 1LJZ A;  1JBD A;  2CRS A;  2N99 A;  2CTX A;  2H64 C;  1KBS A;  2UWR A;  1MR6 A;  2VLW A;  2J8B A;  5DZ5 A;  4BIK B;  3KFD I;  1COE A;  1CXO A;  1CVO A;  5DU1 A;  1HAA A;  2HLR A;  4IYE A;  3BT2 U;  1COD A;  2HLQ A;  2MJ4 A;  1IDG A;  1TXA A;  1KTZ B;  3NH7 A;  1F8U B;  2JQP A;  1ERG A;  2QC1 A;  3U74 U;  1IQ9 A;  2LCR A;  1NYS A;  1REW C;  1IK8 A;  4BDT B;  1ERA A;  1FFJ A;  4XJJ A;  2H5F A;  2CRT A;  2CDX A;  2CCX A;  2H7Z B;  4RUD A;  1KBA A;  1JE9 A;  2H8U A;  2I9B E;  2PJY C;  2H62 C;  2H62 D;  3HH7 A;  1TFS A;  2BHI A;  4P7U A;  1QKD A;  1ZAD A;  1IDI A;  2GOO B;  1NEA A;  4UY2 C;  1CHV S;  5EBX A;  3FEV A;  4EY8 B;  1CXN A;  1KBT A;  1ONJ A;  1DRS A;  2ABX A;  3EVS C;  1PLO A;  1FRA A;  1S4Y A;  3NEQ A;  1H0J A;  3KFD E;  1NYU A;  1QM7 A;  4DO8 A;  2H64 B;  1L4W A;  1HOY A;  2X8B B;  1CB9 A;  2MUO A;  5DO6 A;  3LAQ U;  1FF4 A;  1HC9 A;  1ABT A;  1CRE A;  1KU6 B;  1HAJ A;  1NTN A;  2QJB C;  1IJC A;  1CDS A;  1FSS B;  2UX2 A;  5IMT D;  1BXP A;  4AEA A;  2FD6 U;  1CDQ A;  1KS6 A;  1CTX A;  5IMY C;  1MAH F;  1LXG A;  2NBT A;  3NDS A;  1KL8 A;  1KXI A;  1XT3 A;  1G6M A;  1I02 A;  1NTX A;  1RL5 A;  2QJA C;  2QJ9 C;  6EBX A;  2MFA A;  2K3G A;  1NOR A;  2PJY B;  4OM4 A;  1ES7 B;  4KSN A;  3U73 U;  2ERA A;  1CCQ A;  4FAO E;  4LFT A;  1CDT A;  1NXB A;  2OFS A;  1QKE A;  1FAS A;  1YWH A;  1KC4 A;  1BTE A;  2JVE A;  1F94 A;  4QTI U;  2L5S A;  4FAO C;  2MUP A;  2MHY A;  1V6P A;  1HC9 B;  2LA1 A;  2MJY A;  1IKC A;  1JGK A;  1CRF A;  1LX5 B;  1FSC A;  1RGJ A;  1IDH A;  4OM5 A;  1VB0 A;  3VTS A;  1LSI A;  1B41 B;  3BT1 U;  2MJ0 A;  2L03 A;  3PLC A;  1TGX A;  1TXB A;  1M9Z A;  1UG4 A;  1CDR A;  1LXH A;  2BTX A;  3ERA A;  3QB4 B;  1W6B A;  2GOO C;  2H7Z A;  4HQP F;  1IDL A;  3EBX A;  4ZQY A;  1KFH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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