4RUDA

Crystal structure of a three finger toxin
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
58
structure length
58
Chain Sequence
LKCYSSRTETMTCPEGEDKCEKYAVGLMHGSFFFIYTCTSKCHEGAYNVCCSTDLCNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
publication title Crystal structure of a three finger toxin from M fulvius
rcsb
molecule keywords Three-finger toxin 3b
total genus 9
structure length 58
sequence length 58
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-11-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 4rudA00
1TXBA 4AEAA 1NEAA 1CHVS 2MHYA 1CODA 1CVOA 4FAOE 1MAHF 2H8UA 4XJJA 1CB9A 1F8UB 1L4WA 1MR6A 1NTNA 1CREA 1LX5B 1ERAA 1NYSA 1HOYA 1KBAA 2N99A 1KU6B 2L5SA 1IDIA 2CTXA 4P7UA 3EVSC 2QJAC 6EBXA 2QJ9C 1CCQA 1V6PA 3FEVA 1HC9A 1QKDA 5IMYC 1PLOA 2VLWA 1FFJA 1VB0A 1I02A 1QM7A 1H0JA 2H5FA 1QKEA 1FF4A 2MFAA 4FAOC 1ZADA 1CDQA 2CRSA 1LJZA 1KBSA 5EBXA 1NXBA 1TXAA 3QB4B 4IYEA 2PJYB 1CDTA 1IKCA 1UG4A 1JBDA 1S4YA 1IJCA 1CDRA 2LA1A 1CRFA 3KFDI 4ZQYA 3NEQA 3U73U 2K3GA 1JGKA 5DU1A 3HH7A 2MJ0A 1IK8A 1CTXA 1TFSA 1IDGA 2H64B 2QJBC 1IDHA 3PLCA 1REWC 1RL5A 2FD6U 1FRAA 4OM5A 1HAAA 2CDXA 1IDLA 2CRTA 3BT1U 2J8BA 2MUOA 3BT2U 4UY2C 3ERAA 1FSCA 2GOOB 1COEA 2I9BE 1JE9A 2UWRA 2L03A 1CDSA 1KS6A 1F94A 2BHIA 1FSSB 1KC4A 1ONJA 2H7ZB 1BXPA 1B41B 2MJYA 4LFTA 2HLRA 4OM4A 1KL8A 2BTXA 1KXIA 1TGXA 1XT3A 1LXGA 4QTIU 5IMTD 3KFDE 2X8BB 2ABXA 2NBTA 1NYUA 2UX2A 3EBXA 5DZ5A 2MJ4A 1HC9B 1CXNA 4HQPF 5DO6A 2OFSA 2LCRA 1YWHA 4DO8A 1M9ZA 1ES7B 4EY8B 4RUDA 2MUPA 2CCXA 1FASA 4BDTB 1NORA 2GOOC 3VTSA 1KTZB 1CXOA 1RGJA 1W6BA 1G6MA 2JVEA 2PJYC 2JQPA 1ABTA 3LAQU 1HAJA 1KBTA 1KFHA 1ERGA 1LXHA 2QC1A 2H62D 1IQ9A 1NTXA 1LSIA 2ERAA 2H62C 1DRSA 2H64C 2HLQA 3NDSA 3U74U 1BTEA 2H7ZA 3NH7A 4BIKB
chains in the Genus database with same CATH superfamily
1TXBA 4AEAA 1NEAA 1CHVS 2MHYA 1CODA 1CVOA 4FAOE 1MAHF 2H8UA 4XJJA 1CB9A 1F8UB 1L4WA 1MR6A 1NTNA 1CREA 1LX5B 1ERAA 1NYSA 1HOYA 1KBAA 2N99A 1KU6B 2L5SA 1IDIA 2CTXA 4P7UA 3EVSC 2QJAC 6EBXA 2QJ9C 1CCQA 1V6PA 3FEVA 1HC9A 1QKDA 5IMYC 1PLOA 2VLWA 1FFJA 1VB0A 1I02A 1QM7A 1H0JA 2H5FA 1QKEA 1FF4A 2MFAA 4FAOC 1ZADA 1CDQA 2CRSA 1LJZA 1KBSA 5EBXA 1NXBA 1TXAA 3QB4B 4IYEA 2PJYB 1CDTA 1IKCA 1UG4A 1JBDA 1S4YA 1IJCA 1CDRA 2LA1A 1CRFA 3KFDI 4ZQYA 3NEQA 3U73U 2K3GA 1JGKA 5DU1A 3HH7A 2MJ0A 1IK8A 1CTXA 1TFSA 1IDGA 2H64B 2QJBC 1IDHA 3PLCA 1REWC 1RL5A 2FD6U 1FRAA 4OM5A 1HAAA 2CDXA 1IDLA 2CRTA 3BT1U 2J8BA 2MUOA 3BT2U 4UY2C 3ERAA 1FSCA 4KSNA 2GOOB 1COEA 2I9BE 1JE9A 2UWRA 2L03A 1CDSA 1KS6A 1F94A 2BHIA 1FSSB 1KC4A 1ONJA 2H7ZB 1BXPA 1B41B 2MJYA 4LFTA 2HLRA 4OM4A 1KL8A 2BTXA 1KXIA 1TGXA 1XT3A 1LXGA 4QTIU 5IMTD 3KFDE 2X8BB 2ABXA 2NBTA 1NYUA 2UX2A 3EBXA 5DZ5A 2MJ4A 1HC9B 1CXNA 4HQPF 5DO6A 2OFSA 2LCRA 1YWHA 4DO8A 1M9ZA 1ES7B 4EY8B 4RUDA 2MUPA 2CCXA 1FASA 4BDTB 1NORA 2GOOC 3VTSA 1KTZB 1CXOA 1RGJA 1W6BA 1G6MA 2JVEA 2PJYC 2JQPA 1ABTA 3LAQU 1HAJA 1KBTA 1KFHA 1ERGA 1LXHA 2QC1A 2H62D 1IQ9A 1NTXA 1LSIA 2ERAA 2H62C 1DRSA 2H64C 2HLQA 3NDSA 3U74U 1BTEA 2H7ZA 3NH7A 4BIKB
chains in the Genus database with same CATH topology
1TXBA 4AEAA 1NEAA 1CHVS 2MHYA 1CODA 1CVOA 4FAOE 1MAHF 2H8UA 4XJJA 1CB9A 1F8UB 1L4WA 1MR6A 1NTNA 1CREA 1LX5B 1ERAA 1NYSA 1HOYA 1KBAA 2N99A 1KU6B 2L5SA 1IDIA 2CTXA 4P7UA 3EVSC 2QJAC 6EBXA 2QJ9C 1CCQA 1V6PA 3FEVA 1HC9A 1QKDA 5IMYC 1PLOA 2VLWA 1FFJA 1VB0A 1I02A 1QM7A 1H0JA 2H5FA 1QKEA 1FF4A 2MFAA 4FAOC 1ZADA 1CDQA 2CRSA 1LJZA 1KBSA 5EBXA 1NXBA 1TXAA 3QB4B 4IYEA 2PJYB 1CDTA 1IKCA 1UG4A 1JBDA 1S4YA 1IJCA 1CDRA 2LA1A 1CRFA 3KFDI 4ZQYA 3NEQA 3U73U 2K3GA 1JGKA 5DU1A 3HH7A 2MJ0A 1IK8A 1CTXA 1TFSA 1IDGA 2H64B 2QJBC 1IDHA 3PLCA 1REWC 1RL5A 2FD6U 1FRAA 4OM5A 1HAAA 2CDXA 1IDLA 2CRTA 3BT1U 2J8BA 2MUOA 3BT2U 4UY2C 3ERAA 1FSCA 4KSNA 2GOOB 1COEA 2I9BE 1JE9A 2UWRA 2L03A 1CDSA 1KS6A 1F94A 2BHIA 1FSSB 1KC4A 1ONJA 2H7ZB 1BXPA 1B41B 2MJYA 4LFTA 2HLRA 4OM4A 1KL8A 2BTXA 1KXIA 1TGXA 1XT3A 1LXGA 4QTIU 5IMTD 3KFDE 2X8BB 2ABXA 2NBTA 1NYUA 2UX2A 3EBXA 5DZ5A 2MJ4A 1HC9B 1CXNA 4HQPF 5DO6A 2OFSA 2LCRA 1YWHA 4DO8A 1M9ZA 1ES7B 4EY8B 4RUDA 2MUPA 2CCXA 1FASA 4BDTB 1NORA 2GOOC 3VTSA 1KTZB 1CXOA 1RGJA 1W6BA 1G6MA 2JVEA 2PJYC 2JQPA 1ABTA 3LAQU 1HAJA 1KBTA 1KFHA 1ERGA 1LXHA 2QC1A 2H62D 1IQ9A 1NTXA 1LSIA 2ERAA 2H62C 1DRSA 2H64C 2HLQA 3NDSA 3U74U 1BTEA 2H7ZA 3NH7A 4BIKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TXB A;  4AEA A;  1NEA A;  1CHV S;  2MHY A;  1COD A;  1CVO A;  4FAO E;  1MAH F;  2H8U A;  4XJJ A;  1CB9 A;  1F8U B;  1L4W A;  1MR6 A;  1NTN A;  1CRE A;  1LX5 B;  1ERA A;  1NYS A;  1HOY A;  1KBA A;  2N99 A;  1KU6 B;  2L5S A;  1IDI A;  2CTX A;  4P7U A;  3EVS C;  2QJA C;  6EBX A;  2QJ9 C;  1CCQ A;  1V6P A;  3FEV A;  1HC9 A;  1QKD A;  5IMY C;  1PLO A;  2VLW A;  1FFJ A;  1VB0 A;  1I02 A;  1QM7 A;  1H0J A;  2H5F A;  1QKE A;  1FF4 A;  2MFA A;  4FAO C;  1ZAD A;  1CDQ A;  2CRS A;  1LJZ A;  1KBS A;  5EBX A;  1NXB A;  1TXA A;  3QB4 B;  4IYE A;  2PJY B;  1CDT A;  1IKC A;  1UG4 A;  1JBD A;  1S4Y A;  1IJC A;  1CDR A;  2LA1 A;  1CRF A;  3KFD I;  4ZQY A;  3NEQ A;  3U73 U;  2K3G A;  1JGK A;  5DU1 A;  3HH7 A;  2MJ0 A;  1IK8 A;  1CTX A;  1TFS A;  1IDG A;  2H64 B;  2QJB C;  1IDH A;  3PLC A;  1REW C;  1RL5 A;  2FD6 U;  1FRA A;  4OM5 A;  1HAA A;  2CDX A;  1IDL A;  2CRT A;  3BT1 U;  2J8B A;  2MUO A;  3BT2 U;  4UY2 C;  3ERA A;  1FSC A;  2GOO B;  1COE A;  2I9B E;  1JE9 A;  2UWR A;  2L03 A;  1CDS A;  1KS6 A;  1F94 A;  2BHI A;  1FSS B;  1KC4 A;  1ONJ A;  2H7Z B;  1BXP A;  1B41 B;  2MJY A;  4LFT A;  2HLR A;  4OM4 A;  1KL8 A;  2BTX A;  1KXI A;  1TGX A;  1XT3 A;  1LXG A;  4QTI U;  5IMT D;  3KFD E;  2X8B B;  2ABX A;  2NBT A;  1NYU A;  2UX2 A;  3EBX A;  5DZ5 A;  2MJ4 A;  1HC9 B;  1CXN A;  4HQP F;  5DO6 A;  2OFS A;  2LCR A;  1YWH A;  4DO8 A;  1M9Z A;  1ES7 B;  4EY8 B;  4RUD A;  2MUP A;  2CCX A;  1FAS A;  4BDT B;  1NOR A;  2GOO C;  3VTS A;  1KTZ B;  1CXO A;  1RGJ A;  1W6B A;  1G6M A;  2JVE A;  2PJY C;  2JQP A;  1ABT A;  3LAQ U;  1HAJ A;  1KBT A;  1KFH A;  1ERG A;  1LXH A;  2QC1 A;  2H62 D;  1IQ9 A;  1NTX A;  1LSI A;  2ERA A;  2H62 C;  1DRS A;  2H64 C;  2HLQ A;  3NDS A;  3U74 U;  1BTE A;  2H7Z A;  3NH7 A;  4BIK B; 
#chains in the Genus database with same CATH topology
 1TXB A;  4AEA A;  1NEA A;  1CHV S;  2MHY A;  1COD A;  1CVO A;  4FAO E;  1MAH F;  2H8U A;  4XJJ A;  1CB9 A;  1F8U B;  1L4W A;  1MR6 A;  1NTN A;  1CRE A;  1LX5 B;  1ERA A;  1NYS A;  1HOY A;  1KBA A;  2N99 A;  1KU6 B;  2L5S A;  1IDI A;  2CTX A;  4P7U A;  3EVS C;  2QJA C;  6EBX A;  2QJ9 C;  1CCQ A;  1V6P A;  3FEV A;  1HC9 A;  1QKD A;  5IMY C;  1PLO A;  2VLW A;  1FFJ A;  1VB0 A;  1I02 A;  1QM7 A;  1H0J A;  2H5F A;  1QKE A;  1FF4 A;  2MFA A;  4FAO C;  1ZAD A;  1CDQ A;  2CRS A;  1LJZ A;  1KBS A;  5EBX A;  1NXB A;  1TXA A;  3QB4 B;  4IYE A;  2PJY B;  1CDT A;  1IKC A;  1UG4 A;  1JBD A;  1S4Y A;  1IJC A;  1CDR A;  2LA1 A;  1CRF A;  3KFD I;  4ZQY A;  3NEQ A;  3U73 U;  2K3G A;  1JGK A;  5DU1 A;  3HH7 A;  2MJ0 A;  1IK8 A;  1CTX A;  1TFS A;  1IDG A;  2H64 B;  2QJB C;  1IDH A;  3PLC A;  1REW C;  1RL5 A;  2FD6 U;  1FRA A;  4OM5 A;  1HAA A;  2CDX A;  1IDL A;  2CRT A;  3BT1 U;  2J8B A;  2MUO A;  3BT2 U;  4UY2 C;  3ERA A;  1FSC A;  4KSN A;  2GOO B;  1COE A;  2I9B E;  1JE9 A;  2UWR A;  2L03 A;  1CDS A;  1KS6 A;  1F94 A;  2BHI A;  1FSS B;  1KC4 A;  1ONJ A;  2H7Z B;  1BXP A;  1B41 B;  2MJY A;  4LFT A;  2HLR A;  4OM4 A;  1KL8 A;  2BTX A;  1KXI A;  1TGX A;  1XT3 A;  1LXG A;  4QTI U;  5IMT D;  3KFD E;  2X8B B;  2ABX A;  2NBT A;  1NYU A;  2UX2 A;  3EBX A;  5DZ5 A;  2MJ4 A;  1HC9 B;  1CXN A;  4HQP F;  5DO6 A;  2OFS A;  2LCR A;  1YWH A;  4DO8 A;  1M9Z A;  1ES7 B;  4EY8 B;  4RUD A;  2MUP A;  2CCX A;  1FAS A;  4BDT B;  1NOR A;  2GOO C;  3VTS A;  1KTZ B;  1CXO A;  1RGJ A;  1W6B A;  1G6M A;  2JVE A;  2PJY C;  2JQP A;  1ABT A;  3LAQ U;  1HAJ A;  1KBT A;  1KFH A;  1ERG A;  1LXH A;  2QC1 A;  2H62 D;  1IQ9 A;  1NTX A;  1LSI A;  2ERA A;  2H62 C;  1DRS A;  2H64 C;  2HLQ A;  3NDS A;  3U74 U;  1BTE A;  2H7Z A;  3NH7 A;  4BIK B; 
#chains in the Genus database with same CATH homology
 1TXB A;  4AEA A;  1NEA A;  1CHV S;  2MHY A;  1COD A;  1CVO A;  4FAO E;  1MAH F;  2H8U A;  4XJJ A;  1CB9 A;  1F8U B;  1L4W A;  1MR6 A;  1NTN A;  1CRE A;  1LX5 B;  1ERA A;  1NYS A;  1HOY A;  1KBA A;  2N99 A;  1KU6 B;  2L5S A;  1IDI A;  2CTX A;  4P7U A;  3EVS C;  2QJA C;  6EBX A;  2QJ9 C;  1CCQ A;  1V6P A;  3FEV A;  1HC9 A;  1QKD A;  5IMY C;  1PLO A;  2VLW A;  1FFJ A;  1VB0 A;  1I02 A;  1QM7 A;  1H0J A;  2H5F A;  1QKE A;  1FF4 A;  2MFA A;  4FAO C;  1ZAD A;  1CDQ A;  2CRS A;  1LJZ A;  1KBS A;  5EBX A;  1NXB A;  1TXA A;  3QB4 B;  4IYE A;  2PJY B;  1CDT A;  1IKC A;  1UG4 A;  1JBD A;  1S4Y A;  1IJC A;  1CDR A;  2LA1 A;  1CRF A;  3KFD I;  4ZQY A;  3NEQ A;  3U73 U;  2K3G A;  1JGK A;  5DU1 A;  3HH7 A;  2MJ0 A;  1IK8 A;  1CTX A;  1TFS A;  1IDG A;  2H64 B;  2QJB C;  1IDH A;  3PLC A;  1REW C;  1RL5 A;  2FD6 U;  1FRA A;  4OM5 A;  1HAA A;  2CDX A;  1IDL A;  2CRT A;  3BT1 U;  2J8B A;  2MUO A;  3BT2 U;  4UY2 C;  3ERA A;  1FSC A;  4KSN A;  2GOO B;  1COE A;  2I9B E;  1JE9 A;  2UWR A;  2L03 A;  1CDS A;  1KS6 A;  1F94 A;  2BHI A;  1FSS B;  1KC4 A;  1ONJ A;  2H7Z B;  1BXP A;  1B41 B;  2MJY A;  4LFT A;  2HLR A;  4OM4 A;  1KL8 A;  2BTX A;  1KXI A;  1TGX A;  1XT3 A;  1LXG A;  4QTI U;  5IMT D;  3KFD E;  2X8B B;  2ABX A;  2NBT A;  1NYU A;  2UX2 A;  3EBX A;  5DZ5 A;  2MJ4 A;  1HC9 B;  1CXN A;  4HQP F;  5DO6 A;  2OFS A;  2LCR A;  1YWH A;  4DO8 A;  1M9Z A;  1ES7 B;  4EY8 B;  4RUD A;  2MUP A;  2CCX A;  1FAS A;  4BDT B;  1NOR A;  2GOO C;  3VTS A;  1KTZ B;  1CXO A;  1RGJ A;  1W6B A;  1G6M A;  2JVE A;  2PJY C;  2JQP A;  1ABT A;  3LAQ U;  1HAJ A;  1KBT A;  1KFH A;  1ERG A;  1LXH A;  2QC1 A;  2H62 D;  1IQ9 A;  1NTX A;  1LSI A;  2ERA A;  2H62 C;  1DRS A;  2H64 C;  2HLQ A;  3NDS A;  3U74 U;  1BTE A;  2H7Z A;  3NH7 A;  4BIK B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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