3VTSA

Crystal structure of a three finger toxin from snake venom
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
61
structure length
61
Chain Sequence
LKCHNKLVPFLSKTCPEGKNLCYKMTLMKMPKIPIKRGCTDACPKSSLLVKVVCCNKDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Cytotoxin 1
publication title Identification and structural characterization of a new three-finger toxin hemachatoxin from Hemachatus haemachatus venom.
pubmed doi rcsb
total genus 9
structure length 61
sequence length 61
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3vtsA00
1RL5A 3HH7A 1KXIA 5EBXA 1KC4A 1KU6B 3PLCA 1UG4A 2MJ0A 1CTXA 2N99A 1KS6A 1FF4A 1CHVS 5DU1A 1YWHA 1F8UB 2BHIA 1NXBA 1CDSA 1BXPA 2GOOC 1DRSA 1ABTA 1W6BA 2H64C 2MUOA 3ERAA 2HLRA 4P7UA 2GOOB 2CCXA 2H64B 1BTEA 2BTXA 1IK8A 2I9BE 2QJBC 2LCRA 5IMYC 6EBXA 4OM5A 2HLQA 1TXAA 2UX2A 1IDLA 2J8BA 2UWRA 1G6MA 1S4YA 4ZQYA 1KL8A 1ZADA 1HAAA 4FAOC 1L4WA 3NEQA 2X8BB 1B41B 1ERAA 2CDXA 1CB9A 2K3GA 4UY2C 1REWC 3LAQU 3NDSA 4OM4A 2MFAA 2JQPA 2L03A 1CVOA 1PLOA 1QKDA 4RUDA 1LX5B 3EVSC 1NTNA 2ERAA 2H62C 2VLWA 1RGJA 1TXBA 2MUPA 1IKCA 2NBTA 1LSIA 2CRSA 2CRTA 1I02A 4HQPF 1HOYA 1NEAA 1IJCA 1CDQA 1FSCA 5IMTD 1JGKA 4XJJA 1MAHF 2H8UA 2QC1A 3BT1U 4BDTB 4FAOE 2QJ9C 3QB4B 2L5SA 1CCQA 2PJYC 1FSSB 1V6PA 2MJYA 1CDRA 2PJYB 1MR6A 2FD6U 1IDGA 2H7ZA 1NORA 1CRFA 1M9ZA 4BIKB 1IDHA 1KFHA 1CDTA 4IYEA 1JE9A 1HC9A 1KBSA 1H0JA 1KTZB 1NYUA 2MHYA 1LXGA 1IQ9A 3KFDE 1HAJA 1KBAA 1CXOA 1CXNA 2H7ZB 1NYSA 2CTXA 2MJ4A 1FFJA 3U73U 2H62D 3VTSA 4DO8A 4EY8B 2OFSA 3BT2U 1VB0A 2LA1A 1HC9B 4LFTA 1QKEA 1CODA 5DO6A 1ONJA 2H5FA 1IDIA 2JVEA 1FASA 1XT3A 1LJZA 1TGXA 3FEVA 1COEA 1KBTA 1CREA 1QM7A 3KFDI 5DZ5A 1JBDA 2ABXA 4QTIU 1TFSA 1ES7B 1F94A 1LXHA 4AEAA 3U74U 3EBXA 2QJAC 1NTXA 1FRAA 1ERGA 3NH7A
chains in the Genus database with same CATH superfamily
1RL5A 3HH7A 1KXIA 5EBXA 1KC4A 1KU6B 3PLCA 1UG4A 2MJ0A 1CTXA 2N99A 1KS6A 1FF4A 1CHVS 5DU1A 1YWHA 1F8UB 2BHIA 1NXBA 1CDSA 1BXPA 2GOOC 1DRSA 1ABTA 1W6BA 2H64C 2MUOA 3ERAA 2HLRA 4P7UA 2GOOB 2CCXA 2H64B 1BTEA 2BTXA 1IK8A 2I9BE 2QJBC 2LCRA 5IMYC 6EBXA 4KSNA 4OM5A 2HLQA 1TXAA 2UX2A 1IDLA 2J8BA 2UWRA 1G6MA 1S4YA 4ZQYA 1KL8A 1ZADA 1HAAA 4FAOC 1L4WA 3NEQA 2X8BB 1B41B 1ERAA 2CDXA 1CB9A 2K3GA 4UY2C 1REWC 3LAQU 3NDSA 4OM4A 2MFAA 2JQPA 2L03A 1CVOA 1PLOA 1QKDA 4RUDA 1LX5B 3EVSC 1NTNA 2ERAA 2H62C 2VLWA 1RGJA 1TXBA 2MUPA 1IKCA 2NBTA 1LSIA 2CRSA 2CRTA 1I02A 4HQPF 1HOYA 1NEAA 1IJCA 1CDQA 1FSCA 5IMTD 1JGKA 4XJJA 1MAHF 2H8UA 2QC1A 3BT1U 4BDTB 4FAOE 2QJ9C 3QB4B 2L5SA 1CCQA 2PJYC 1FSSB 1V6PA 2MJYA 1CDRA 2PJYB 1MR6A 2FD6U 1IDGA 2H7ZA 1NORA 1CRFA 1M9ZA 4BIKB 1IDHA 1KFHA 1CDTA 4IYEA 1JE9A 1HC9A 1KBSA 1H0JA 1KTZB 1NYUA 2MHYA 1LXGA 1IQ9A 3KFDE 1HAJA 1KBAA 1CXOA 1CXNA 2H7ZB 1NYSA 2CTXA 2MJ4A 1FFJA 3U73U 2H62D 3VTSA 4DO8A 4EY8B 2OFSA 3BT2U 1VB0A 2LA1A 1HC9B 4LFTA 1QKEA 1CODA 5DO6A 1ONJA 2H5FA 1IDIA 2JVEA 1FASA 1XT3A 1LJZA 1TGXA 3FEVA 1COEA 1KBTA 1CREA 1QM7A 3KFDI 5DZ5A 1JBDA 2ABXA 4QTIU 1TFSA 1ES7B 1F94A 1LXHA 4AEAA 3U74U 3EBXA 2QJAC 1NTXA 1FRAA 1ERGA 3NH7A
chains in the Genus database with same CATH topology
1RL5A 3HH7A 1KXIA 5EBXA 1KC4A 1KU6B 3PLCA 1UG4A 2MJ0A 1CTXA 2N99A 1KS6A 1FF4A 1CHVS 5DU1A 1YWHA 1F8UB 2BHIA 1NXBA 1CDSA 1BXPA 2GOOC 1DRSA 1ABTA 1W6BA 2H64C 2MUOA 3ERAA 2HLRA 4P7UA 2GOOB 2CCXA 2H64B 1BTEA 2BTXA 1IK8A 2I9BE 2QJBC 2LCRA 5IMYC 6EBXA 4KSNA 4OM5A 2HLQA 1TXAA 2UX2A 1IDLA 2J8BA 2UWRA 1G6MA 1S4YA 4ZQYA 1KL8A 1ZADA 1HAAA 4FAOC 1L4WA 3NEQA 2X8BB 1B41B 1ERAA 2CDXA 1CB9A 2K3GA 4UY2C 1REWC 3LAQU 3NDSA 4OM4A 2MFAA 2JQPA 2L03A 1CVOA 1PLOA 1QKDA 4RUDA 1LX5B 3EVSC 1NTNA 2ERAA 2H62C 2VLWA 1RGJA 1TXBA 2MUPA 1IKCA 2NBTA 1LSIA 2CRSA 2CRTA 1I02A 4HQPF 1HOYA 1NEAA 1IJCA 1CDQA 1FSCA 5IMTD 1JGKA 4XJJA 1MAHF 2H8UA 2QC1A 3BT1U 4BDTB 4FAOE 2QJ9C 3QB4B 2L5SA 1CCQA 2PJYC 1FSSB 1V6PA 2MJYA 1CDRA 2PJYB 1MR6A 2FD6U 1IDGA 2H7ZA 1NORA 1CRFA 1M9ZA 4BIKB 1IDHA 1KFHA 1CDTA 4IYEA 1JE9A 1HC9A 1KBSA 1H0JA 1KTZB 1NYUA 2MHYA 1LXGA 1IQ9A 3KFDE 1HAJA 1KBAA 1CXOA 1CXNA 2H7ZB 1NYSA 2CTXA 2MJ4A 1FFJA 3U73U 2H62D 3VTSA 4DO8A 4EY8B 2OFSA 3BT2U 1VB0A 2LA1A 1HC9B 4LFTA 1QKEA 1CODA 5DO6A 1ONJA 2H5FA 1IDIA 2JVEA 1FASA 1XT3A 1LJZA 1TGXA 3FEVA 1COEA 1KBTA 1CREA 1QM7A 3KFDI 5DZ5A 1JBDA 2ABXA 4QTIU 1TFSA 1ES7B 1F94A 1LXHA 4AEAA 3U74U 3EBXA 2QJAC 1NTXA 1FRAA 1ERGA 3NH7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RL5 A;  3HH7 A;  1KXI A;  5EBX A;  1KC4 A;  1KU6 B;  3PLC A;  1UG4 A;  2MJ0 A;  1CTX A;  2N99 A;  1KS6 A;  1FF4 A;  1CHV S;  5DU1 A;  1YWH A;  1F8U B;  2BHI A;  1NXB A;  1CDS A;  1BXP A;  2GOO C;  1DRS A;  1ABT A;  1W6B A;  2H64 C;  2MUO A;  3ERA A;  2HLR A;  4P7U A;  2GOO B;  2CCX A;  2H64 B;  1BTE A;  2BTX A;  1IK8 A;  2I9B E;  2QJB C;  2LCR A;  5IMY C;  6EBX A;  4OM5 A;  2HLQ A;  1TXA A;  2UX2 A;  1IDL A;  2J8B A;  2UWR A;  1G6M A;  1S4Y A;  4ZQY A;  1KL8 A;  1ZAD A;  1HAA A;  4FAO C;  1L4W A;  3NEQ A;  2X8B B;  1B41 B;  1ERA A;  2CDX A;  1CB9 A;  2K3G A;  4UY2 C;  1REW C;  3LAQ U;  3NDS A;  4OM4 A;  2MFA A;  2JQP A;  2L03 A;  1CVO A;  1PLO A;  1QKD A;  4RUD A;  1LX5 B;  3EVS C;  1NTN A;  2ERA A;  2H62 C;  2VLW A;  1RGJ A;  1TXB A;  2MUP A;  1IKC A;  2NBT A;  1LSI A;  2CRS A;  2CRT A;  1I02 A;  4HQP F;  1HOY A;  1NEA A;  1IJC A;  1CDQ A;  1FSC A;  5IMT D;  1JGK A;  4XJJ A;  1MAH F;  2H8U A;  2QC1 A;  3BT1 U;  4BDT B;  4FAO E;  2QJ9 C;  3QB4 B;  2L5S A;  1CCQ A;  2PJY C;  1FSS B;  1V6P A;  2MJY A;  1CDR A;  2PJY B;  1MR6 A;  2FD6 U;  1IDG A;  2H7Z A;  1NOR A;  1CRF A;  1M9Z A;  4BIK B;  1IDH A;  1KFH A;  1CDT A;  4IYE A;  1JE9 A;  1HC9 A;  1KBS A;  1H0J A;  1KTZ B;  1NYU A;  2MHY A;  1LXG A;  1IQ9 A;  3KFD E;  1HAJ A;  1KBA A;  1CXO A;  1CXN A;  2H7Z B;  1NYS A;  2CTX A;  2MJ4 A;  1FFJ A;  3U73 U;  2H62 D;  3VTS A;  4DO8 A;  4EY8 B;  2OFS A;  3BT2 U;  1VB0 A;  2LA1 A;  1HC9 B;  4LFT A;  1QKE A;  1COD A;  5DO6 A;  1ONJ A;  2H5F A;  1IDI A;  2JVE A;  1FAS A;  1XT3 A;  1LJZ A;  1TGX A;  3FEV A;  1COE A;  1KBT A;  1CRE A;  1QM7 A;  3KFD I;  5DZ5 A;  1JBD A;  2ABX A;  4QTI U;  1TFS A;  1ES7 B;  1F94 A;  1LXH A;  4AEA A;  3U74 U;  3EBX A;  2QJA C;  1NTX A;  1FRA A;  1ERG A;  3NH7 A; 
#chains in the Genus database with same CATH topology
 1RL5 A;  3HH7 A;  1KXI A;  5EBX A;  1KC4 A;  1KU6 B;  3PLC A;  1UG4 A;  2MJ0 A;  1CTX A;  2N99 A;  1KS6 A;  1FF4 A;  1CHV S;  5DU1 A;  1YWH A;  1F8U B;  2BHI A;  1NXB A;  1CDS A;  1BXP A;  2GOO C;  1DRS A;  1ABT A;  1W6B A;  2H64 C;  2MUO A;  3ERA A;  2HLR A;  4P7U A;  2GOO B;  2CCX A;  2H64 B;  1BTE A;  2BTX A;  1IK8 A;  2I9B E;  2QJB C;  2LCR A;  5IMY C;  6EBX A;  4KSN A;  4OM5 A;  2HLQ A;  1TXA A;  2UX2 A;  1IDL A;  2J8B A;  2UWR A;  1G6M A;  1S4Y A;  4ZQY A;  1KL8 A;  1ZAD A;  1HAA A;  4FAO C;  1L4W A;  3NEQ A;  2X8B B;  1B41 B;  1ERA A;  2CDX A;  1CB9 A;  2K3G A;  4UY2 C;  1REW C;  3LAQ U;  3NDS A;  4OM4 A;  2MFA A;  2JQP A;  2L03 A;  1CVO A;  1PLO A;  1QKD A;  4RUD A;  1LX5 B;  3EVS C;  1NTN A;  2ERA A;  2H62 C;  2VLW A;  1RGJ A;  1TXB A;  2MUP A;  1IKC A;  2NBT A;  1LSI A;  2CRS A;  2CRT A;  1I02 A;  4HQP F;  1HOY A;  1NEA A;  1IJC A;  1CDQ A;  1FSC A;  5IMT D;  1JGK A;  4XJJ A;  1MAH F;  2H8U A;  2QC1 A;  3BT1 U;  4BDT B;  4FAO E;  2QJ9 C;  3QB4 B;  2L5S A;  1CCQ A;  2PJY C;  1FSS B;  1V6P A;  2MJY A;  1CDR A;  2PJY B;  1MR6 A;  2FD6 U;  1IDG A;  2H7Z A;  1NOR A;  1CRF A;  1M9Z A;  4BIK B;  1IDH A;  1KFH A;  1CDT A;  4IYE A;  1JE9 A;  1HC9 A;  1KBS A;  1H0J A;  1KTZ B;  1NYU A;  2MHY A;  1LXG A;  1IQ9 A;  3KFD E;  1HAJ A;  1KBA A;  1CXO A;  1CXN A;  2H7Z B;  1NYS A;  2CTX A;  2MJ4 A;  1FFJ A;  3U73 U;  2H62 D;  3VTS A;  4DO8 A;  4EY8 B;  2OFS A;  3BT2 U;  1VB0 A;  2LA1 A;  1HC9 B;  4LFT A;  1QKE A;  1COD A;  5DO6 A;  1ONJ A;  2H5F A;  1IDI A;  2JVE A;  1FAS A;  1XT3 A;  1LJZ A;  1TGX A;  3FEV A;  1COE A;  1KBT A;  1CRE A;  1QM7 A;  3KFD I;  5DZ5 A;  1JBD A;  2ABX A;  4QTI U;  1TFS A;  1ES7 B;  1F94 A;  1LXH A;  4AEA A;  3U74 U;  3EBX A;  2QJA C;  1NTX A;  1FRA A;  1ERG A;  3NH7 A; 
#chains in the Genus database with same CATH homology
 1RL5 A;  3HH7 A;  1KXI A;  5EBX A;  1KC4 A;  1KU6 B;  3PLC A;  1UG4 A;  2MJ0 A;  1CTX A;  2N99 A;  1KS6 A;  1FF4 A;  1CHV S;  5DU1 A;  1YWH A;  1F8U B;  2BHI A;  1NXB A;  1CDS A;  1BXP A;  2GOO C;  1DRS A;  1ABT A;  1W6B A;  2H64 C;  2MUO A;  3ERA A;  2HLR A;  4P7U A;  2GOO B;  2CCX A;  2H64 B;  1BTE A;  2BTX A;  1IK8 A;  2I9B E;  2QJB C;  2LCR A;  5IMY C;  6EBX A;  4KSN A;  4OM5 A;  2HLQ A;  1TXA A;  2UX2 A;  1IDL A;  2J8B A;  2UWR A;  1G6M A;  1S4Y A;  4ZQY A;  1KL8 A;  1ZAD A;  1HAA A;  4FAO C;  1L4W A;  3NEQ A;  2X8B B;  1B41 B;  1ERA A;  2CDX A;  1CB9 A;  2K3G A;  4UY2 C;  1REW C;  3LAQ U;  3NDS A;  4OM4 A;  2MFA A;  2JQP A;  2L03 A;  1CVO A;  1PLO A;  1QKD A;  4RUD A;  1LX5 B;  3EVS C;  1NTN A;  2ERA A;  2H62 C;  2VLW A;  1RGJ A;  1TXB A;  2MUP A;  1IKC A;  2NBT A;  1LSI A;  2CRS A;  2CRT A;  1I02 A;  4HQP F;  1HOY A;  1NEA A;  1IJC A;  1CDQ A;  1FSC A;  5IMT D;  1JGK A;  4XJJ A;  1MAH F;  2H8U A;  2QC1 A;  3BT1 U;  4BDT B;  4FAO E;  2QJ9 C;  3QB4 B;  2L5S A;  1CCQ A;  2PJY C;  1FSS B;  1V6P A;  2MJY A;  1CDR A;  2PJY B;  1MR6 A;  2FD6 U;  1IDG A;  2H7Z A;  1NOR A;  1CRF A;  1M9Z A;  4BIK B;  1IDH A;  1KFH A;  1CDT A;  4IYE A;  1JE9 A;  1HC9 A;  1KBS A;  1H0J A;  1KTZ B;  1NYU A;  2MHY A;  1LXG A;  1IQ9 A;  3KFD E;  1HAJ A;  1KBA A;  1CXO A;  1CXN A;  2H7Z B;  1NYS A;  2CTX A;  2MJ4 A;  1FFJ A;  3U73 U;  2H62 D;  3VTS A;  4DO8 A;  4EY8 B;  2OFS A;  3BT2 U;  1VB0 A;  2LA1 A;  1HC9 B;  4LFT A;  1QKE A;  1COD A;  5DO6 A;  1ONJ A;  2H5F A;  1IDI A;  2JVE A;  1FAS A;  1XT3 A;  1LJZ A;  1TGX A;  3FEV A;  1COE A;  1KBT A;  1CRE A;  1QM7 A;  3KFD I;  5DZ5 A;  1JBD A;  2ABX A;  4QTI U;  1TFS A;  1ES7 B;  1F94 A;  1LXH A;  4AEA A;  3U74 U;  3EBX A;  2QJA C;  1NTX A;  1FRA A;  1ERG A;  3NH7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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