2JQPA

Nmr structure determination of bungatoxin from bungarus candidus (malayan krait)
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
65
structure length
65
Chain Sequence
LTCLICPEKDCQKVHTCRNEEKICVKRFYDKNQLGWRAQRGCAVSCPKAKPNETVQCCSTDKCNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Weak toxin 1
publication title NMR solution Structure of Bungatoxin from Bungarus Candidus (Malayan Krait)venom
rcsb
total genus 5
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 2007-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2jqpA00
2JQPA 2BHIA 1HAJA 3EBXA 1IJCA 3QB4B 1CTXA 4DO8A 1REWC 1ERGA 4AEAA 1FSCA 2UWRA 1KS6A 1DRSA 1KL8A 2MUPA 2UX2A 1FFJA 1BXPA 1ABTA 5EBXA 1LSIA 1RL5A 4RUDA 2LCRA 1KTZB 1KC4A 2QJBC 1KBAA 4P7UA 1IK8A 4XJJA 5IMYC 1HC9B 2FD6U 1CHVS 4BIKB 1IDHA 1QKEA 2CDXA 3EVSC 1KBTA 1LXGA 2N99A 1KFHA 1IDGA 2L03A 1YWHA 1NYSA 1F8UB 3NEQA 1CRFA 1TFSA 4OM4A 6EBXA 2X8BB 2ABXA 2HLQA 1TGXA 1JBDA 2H62C 4IYEA 4LFTA 2H64C 5DU1A 2NBTA 1UG4A 2PJYC 1NTXA 2GOOC 1MAHF 1NORA 1JGKA 3FEVA 4EY8B 3BT2U 1XT3A 3KFDI 1CDTA 1KU6B 1HAAA 1ES7B 1CXNA 1CDRA 1PLOA 3KFDE 2QJAC 3NDSA 1NXBA 4HQPF 2H5FA 1CREA 1QM7A 4OM5A 1B41B 2LA1A 1FSSB 1CCQA 1VB0A 4QTIU 1HC9A 3HH7A 3U73U 2QJ9C 2H64B 1CDQA 2QC1A 4UY2C 1IQ9A 1CB9A 1M9ZA 2PJYB 1NTNA 3U74U 2GOOB 1TXBA 1JE9A 2I9BE 3BT1U 1FF4A 1FRAA 5IMTD 2K3GA 1CVOA 2J8BA 2HLRA 1NEAA 3PLCA 1I02A 2CRTA 1V6PA 1IKCA 1H0JA 3VTSA 1QKDA 3NH7A 1ZADA 1L4WA 2CRSA 1FASA 1S4YA 1LXHA 5DZ5A 1CXOA 1ONJA 2H7ZB 2MJYA 2VLWA 2L5SA 5DO6A 1KBSA 2MFAA 1MR6A 1ERAA 2OFSA 3ERAA 1CODA 1LJZA 2H62D 1LX5B 4ZQYA 4BDTB 1F94A 1CDSA 1COEA 4FAOC 4FAOE 1G6MA 3LAQU 2MJ4A 1IDLA 2H7ZA 1RGJA 2CTXA 2ERAA 1TXAA 1IDIA 2H8UA 2MJ0A 2MUOA 1KXIA 2JVEA 2BTXA 2MHYA 2CCXA 1HOYA 1NYUA 1W6BA 1BTEA
chains in the Genus database with same CATH superfamily
2JQPA 2BHIA 1HAJA 3EBXA 1IJCA 3QB4B 1CTXA 4DO8A 1REWC 1ERGA 4AEAA 1FSCA 2UWRA 1KS6A 1DRSA 1KL8A 2MUPA 2UX2A 1FFJA 1BXPA 1ABTA 5EBXA 1LSIA 1RL5A 4RUDA 2LCRA 1KTZB 1KC4A 2QJBC 1KBAA 4P7UA 1IK8A 4XJJA 5IMYC 1HC9B 2FD6U 1CHVS 4BIKB 1IDHA 1QKEA 2CDXA 3EVSC 1KBTA 1LXGA 2N99A 1KFHA 1IDGA 2L03A 1YWHA 1NYSA 1F8UB 3NEQA 1CRFA 1TFSA 4OM4A 6EBXA 2X8BB 4KSNA 2ABXA 2HLQA 1TGXA 1JBDA 2H62C 4IYEA 4LFTA 2H64C 5DU1A 2NBTA 1UG4A 2PJYC 1NTXA 2GOOC 1MAHF 1NORA 1JGKA 3FEVA 4EY8B 3BT2U 1XT3A 3KFDI 1CDTA 1KU6B 1HAAA 1ES7B 1CXNA 1CDRA 1PLOA 3KFDE 2QJAC 3NDSA 1NXBA 4HQPF 2H5FA 1CREA 1QM7A 4OM5A 1B41B 2LA1A 1FSSB 1CCQA 1VB0A 4QTIU 1HC9A 3HH7A 3U73U 2QJ9C 2H64B 1CDQA 2QC1A 4UY2C 1IQ9A 1CB9A 1M9ZA 2PJYB 1NTNA 3U74U 2GOOB 1TXBA 1JE9A 2I9BE 3BT1U 1FF4A 1FRAA 5IMTD 2K3GA 1CVOA 2J8BA 2HLRA 1NEAA 3PLCA 1I02A 2CRTA 1V6PA 1IKCA 1H0JA 3VTSA 1QKDA 3NH7A 1ZADA 1L4WA 2CRSA 1FASA 1S4YA 1LXHA 5DZ5A 1CXOA 1ONJA 2H7ZB 2MJYA 2VLWA 2L5SA 5DO6A 1KBSA 2MFAA 1MR6A 1ERAA 2OFSA 3ERAA 1CODA 1LJZA 2H62D 1LX5B 4ZQYA 4BDTB 1F94A 1CDSA 1COEA 4FAOC 4FAOE 1G6MA 3LAQU 2MJ4A 1IDLA 2H7ZA 1RGJA 2CTXA 2ERAA 1TXAA 1IDIA 2H8UA 2MJ0A 2MUOA 1KXIA 2JVEA 2BTXA 2MHYA 2CCXA 1HOYA 1NYUA 1W6BA 1BTEA
chains in the Genus database with same CATH topology
2JQPA 2BHIA 1HAJA 3EBXA 1IJCA 3QB4B 1CTXA 4DO8A 1REWC 1ERGA 4AEAA 1FSCA 2UWRA 1KS6A 1DRSA 1KL8A 2MUPA 2UX2A 1FFJA 1BXPA 1ABTA 5EBXA 1LSIA 1RL5A 4RUDA 2LCRA 1KTZB 1KC4A 2QJBC 1KBAA 4P7UA 1IK8A 4XJJA 5IMYC 1HC9B 2FD6U 1CHVS 4BIKB 1IDHA 1QKEA 2CDXA 3EVSC 1KBTA 1LXGA 2N99A 1KFHA 1IDGA 2L03A 1YWHA 1NYSA 1F8UB 3NEQA 1CRFA 1TFSA 4OM4A 6EBXA 2X8BB 4KSNA 2ABXA 2HLQA 1TGXA 1JBDA 2H62C 4IYEA 4LFTA 2H64C 5DU1A 2NBTA 1UG4A 2PJYC 1NTXA 2GOOC 1MAHF 1NORA 1JGKA 3FEVA 4EY8B 3BT2U 1XT3A 3KFDI 1CDTA 1KU6B 1HAAA 1ES7B 1CXNA 1CDRA 1PLOA 3KFDE 2QJAC 3NDSA 1NXBA 4HQPF 2H5FA 1CREA 1QM7A 4OM5A 1B41B 2LA1A 1FSSB 1CCQA 1VB0A 4QTIU 1HC9A 3HH7A 3U73U 2QJ9C 2H64B 1CDQA 2QC1A 4UY2C 1IQ9A 1CB9A 1M9ZA 2PJYB 1NTNA 3U74U 2GOOB 1TXBA 1JE9A 2I9BE 3BT1U 1FF4A 1FRAA 5IMTD 2K3GA 1CVOA 2J8BA 2HLRA 1NEAA 3PLCA 1I02A 2CRTA 1V6PA 1IKCA 1H0JA 3VTSA 1QKDA 3NH7A 1ZADA 1L4WA 2CRSA 1FASA 1S4YA 1LXHA 5DZ5A 1CXOA 1ONJA 2H7ZB 2MJYA 2VLWA 2L5SA 5DO6A 1KBSA 2MFAA 1MR6A 1ERAA 2OFSA 3ERAA 1CODA 1LJZA 2H62D 1LX5B 4ZQYA 4BDTB 1F94A 1CDSA 1COEA 4FAOC 4FAOE 1G6MA 3LAQU 2MJ4A 1IDLA 2H7ZA 1RGJA 2CTXA 2ERAA 1TXAA 1IDIA 2H8UA 2MJ0A 2MUOA 1KXIA 2JVEA 2BTXA 2MHYA 2CCXA 1HOYA 1NYUA 1W6BA 1BTEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JQP A;  2BHI A;  1HAJ A;  3EBX A;  1IJC A;  3QB4 B;  1CTX A;  4DO8 A;  1REW C;  1ERG A;  4AEA A;  1FSC A;  2UWR A;  1KS6 A;  1DRS A;  1KL8 A;  2MUP A;  2UX2 A;  1FFJ A;  1BXP A;  1ABT A;  5EBX A;  1LSI A;  1RL5 A;  4RUD A;  2LCR A;  1KTZ B;  1KC4 A;  2QJB C;  1KBA A;  4P7U A;  1IK8 A;  4XJJ A;  5IMY C;  1HC9 B;  2FD6 U;  1CHV S;  4BIK B;  1IDH A;  1QKE A;  2CDX A;  3EVS C;  1KBT A;  1LXG A;  2N99 A;  1KFH A;  1IDG A;  2L03 A;  1YWH A;  1NYS A;  1F8U B;  3NEQ A;  1CRF A;  1TFS A;  4OM4 A;  6EBX A;  2X8B B;  2ABX A;  2HLQ A;  1TGX A;  1JBD A;  2H62 C;  4IYE A;  4LFT A;  2H64 C;  5DU1 A;  2NBT A;  1UG4 A;  2PJY C;  1NTX A;  2GOO C;  1MAH F;  1NOR A;  1JGK A;  3FEV A;  4EY8 B;  3BT2 U;  1XT3 A;  3KFD I;  1CDT A;  1KU6 B;  1HAA A;  1ES7 B;  1CXN A;  1CDR A;  1PLO A;  3KFD E;  2QJA C;  3NDS A;  1NXB A;  4HQP F;  2H5F A;  1CRE A;  1QM7 A;  4OM5 A;  1B41 B;  2LA1 A;  1FSS B;  1CCQ A;  1VB0 A;  4QTI U;  1HC9 A;  3HH7 A;  3U73 U;  2QJ9 C;  2H64 B;  1CDQ A;  2QC1 A;  4UY2 C;  1IQ9 A;  1CB9 A;  1M9Z A;  2PJY B;  1NTN A;  3U74 U;  2GOO B;  1TXB A;  1JE9 A;  2I9B E;  3BT1 U;  1FF4 A;  1FRA A;  5IMT D;  2K3G A;  1CVO A;  2J8B A;  2HLR A;  1NEA A;  3PLC A;  1I02 A;  2CRT A;  1V6P A;  1IKC A;  1H0J A;  3VTS A;  1QKD A;  3NH7 A;  1ZAD A;  1L4W A;  2CRS A;  1FAS A;  1S4Y A;  1LXH A;  5DZ5 A;  1CXO A;  1ONJ A;  2H7Z B;  2MJY A;  2VLW A;  2L5S A;  5DO6 A;  1KBS A;  2MFA A;  1MR6 A;  1ERA A;  2OFS A;  3ERA A;  1COD A;  1LJZ A;  2H62 D;  1LX5 B;  4ZQY A;  4BDT B;  1F94 A;  1CDS A;  1COE A;  4FAO C;  4FAO E;  1G6M A;  3LAQ U;  2MJ4 A;  1IDL A;  2H7Z A;  1RGJ A;  2CTX A;  2ERA A;  1TXA A;  1IDI A;  2H8U A;  2MJ0 A;  2MUO A;  1KXI A;  2JVE A;  2BTX A;  2MHY A;  2CCX A;  1HOY A;  1NYU A;  1W6B A;  1BTE A; 
#chains in the Genus database with same CATH topology
 2JQP A;  2BHI A;  1HAJ A;  3EBX A;  1IJC A;  3QB4 B;  1CTX A;  4DO8 A;  1REW C;  1ERG A;  4AEA A;  1FSC A;  2UWR A;  1KS6 A;  1DRS A;  1KL8 A;  2MUP A;  2UX2 A;  1FFJ A;  1BXP A;  1ABT A;  5EBX A;  1LSI A;  1RL5 A;  4RUD A;  2LCR A;  1KTZ B;  1KC4 A;  2QJB C;  1KBA A;  4P7U A;  1IK8 A;  4XJJ A;  5IMY C;  1HC9 B;  2FD6 U;  1CHV S;  4BIK B;  1IDH A;  1QKE A;  2CDX A;  3EVS C;  1KBT A;  1LXG A;  2N99 A;  1KFH A;  1IDG A;  2L03 A;  1YWH A;  1NYS A;  1F8U B;  3NEQ A;  1CRF A;  1TFS A;  4OM4 A;  6EBX A;  2X8B B;  4KSN A;  2ABX A;  2HLQ A;  1TGX A;  1JBD A;  2H62 C;  4IYE A;  4LFT A;  2H64 C;  5DU1 A;  2NBT A;  1UG4 A;  2PJY C;  1NTX A;  2GOO C;  1MAH F;  1NOR A;  1JGK A;  3FEV A;  4EY8 B;  3BT2 U;  1XT3 A;  3KFD I;  1CDT A;  1KU6 B;  1HAA A;  1ES7 B;  1CXN A;  1CDR A;  1PLO A;  3KFD E;  2QJA C;  3NDS A;  1NXB A;  4HQP F;  2H5F A;  1CRE A;  1QM7 A;  4OM5 A;  1B41 B;  2LA1 A;  1FSS B;  1CCQ A;  1VB0 A;  4QTI U;  1HC9 A;  3HH7 A;  3U73 U;  2QJ9 C;  2H64 B;  1CDQ A;  2QC1 A;  4UY2 C;  1IQ9 A;  1CB9 A;  1M9Z A;  2PJY B;  1NTN A;  3U74 U;  2GOO B;  1TXB A;  1JE9 A;  2I9B E;  3BT1 U;  1FF4 A;  1FRA A;  5IMT D;  2K3G A;  1CVO A;  2J8B A;  2HLR A;  1NEA A;  3PLC A;  1I02 A;  2CRT A;  1V6P A;  1IKC A;  1H0J A;  3VTS A;  1QKD A;  3NH7 A;  1ZAD A;  1L4W A;  2CRS A;  1FAS A;  1S4Y A;  1LXH A;  5DZ5 A;  1CXO A;  1ONJ A;  2H7Z B;  2MJY A;  2VLW A;  2L5S A;  5DO6 A;  1KBS A;  2MFA A;  1MR6 A;  1ERA A;  2OFS A;  3ERA A;  1COD A;  1LJZ A;  2H62 D;  1LX5 B;  4ZQY A;  4BDT B;  1F94 A;  1CDS A;  1COE A;  4FAO C;  4FAO E;  1G6M A;  3LAQ U;  2MJ4 A;  1IDL A;  2H7Z A;  1RGJ A;  2CTX A;  2ERA A;  1TXA A;  1IDI A;  2H8U A;  2MJ0 A;  2MUO A;  1KXI A;  2JVE A;  2BTX A;  2MHY A;  2CCX A;  1HOY A;  1NYU A;  1W6B A;  1BTE A; 
#chains in the Genus database with same CATH homology
 2JQP A;  2BHI A;  1HAJ A;  3EBX A;  1IJC A;  3QB4 B;  1CTX A;  4DO8 A;  1REW C;  1ERG A;  4AEA A;  1FSC A;  2UWR A;  1KS6 A;  1DRS A;  1KL8 A;  2MUP A;  2UX2 A;  1FFJ A;  1BXP A;  1ABT A;  5EBX A;  1LSI A;  1RL5 A;  4RUD A;  2LCR A;  1KTZ B;  1KC4 A;  2QJB C;  1KBA A;  4P7U A;  1IK8 A;  4XJJ A;  5IMY C;  1HC9 B;  2FD6 U;  1CHV S;  4BIK B;  1IDH A;  1QKE A;  2CDX A;  3EVS C;  1KBT A;  1LXG A;  2N99 A;  1KFH A;  1IDG A;  2L03 A;  1YWH A;  1NYS A;  1F8U B;  3NEQ A;  1CRF A;  1TFS A;  4OM4 A;  6EBX A;  2X8B B;  4KSN A;  2ABX A;  2HLQ A;  1TGX A;  1JBD A;  2H62 C;  4IYE A;  4LFT A;  2H64 C;  5DU1 A;  2NBT A;  1UG4 A;  2PJY C;  1NTX A;  2GOO C;  1MAH F;  1NOR A;  1JGK A;  3FEV A;  4EY8 B;  3BT2 U;  1XT3 A;  3KFD I;  1CDT A;  1KU6 B;  1HAA A;  1ES7 B;  1CXN A;  1CDR A;  1PLO A;  3KFD E;  2QJA C;  3NDS A;  1NXB A;  4HQP F;  2H5F A;  1CRE A;  1QM7 A;  4OM5 A;  1B41 B;  2LA1 A;  1FSS B;  1CCQ A;  1VB0 A;  4QTI U;  1HC9 A;  3HH7 A;  3U73 U;  2QJ9 C;  2H64 B;  1CDQ A;  2QC1 A;  4UY2 C;  1IQ9 A;  1CB9 A;  1M9Z A;  2PJY B;  1NTN A;  3U74 U;  2GOO B;  1TXB A;  1JE9 A;  2I9B E;  3BT1 U;  1FF4 A;  1FRA A;  5IMT D;  2K3G A;  1CVO A;  2J8B A;  2HLR A;  1NEA A;  3PLC A;  1I02 A;  2CRT A;  1V6P A;  1IKC A;  1H0J A;  3VTS A;  1QKD A;  3NH7 A;  1ZAD A;  1L4W A;  2CRS A;  1FAS A;  1S4Y A;  1LXH A;  5DZ5 A;  1CXO A;  1ONJ A;  2H7Z B;  2MJY A;  2VLW A;  2L5S A;  5DO6 A;  1KBS A;  2MFA A;  1MR6 A;  1ERA A;  2OFS A;  3ERA A;  1COD A;  1LJZ A;  2H62 D;  1LX5 B;  4ZQY A;  4BDT B;  1F94 A;  1CDS A;  1COE A;  4FAO C;  4FAO E;  1G6M A;  3LAQ U;  2MJ4 A;  1IDL A;  2H7Z A;  1RGJ A;  2CTX A;  2ERA A;  1TXA A;  1IDI A;  2H8U A;  2MJ0 A;  2MUO A;  1KXI A;  2JVE A;  2BTX A;  2MHY A;  2CCX A;  1HOY A;  1NYU A;  1W6B A;  1BTE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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