2PJYB

Structural basis for cooperative assembly of the tgf-beta signaling complex
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
108
structure length
108
Chain Sequence
b'AGAVKFPQLCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPKCIMKEKKKPGETFFMCSCSSDECNDNIIF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Cooperative assembly of TGF-beta superfamily signaling complexes is mediated by two disparate mechanisms and distinct modes of receptor binding.
pubmed doi rcsb
molecule keywords Transforming growth factor beta-3
source organism Homo sapiens
molecule tags Cytokine/cytokine receptor
total genus 20
structure length 108
sequence length 108
ec nomenclature ec 2.7.11.30: Receptor protein serine/threonine kinase.
pdb deposition date 2007-04-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2pjyB00
1HC9B 1TGXA 3BT1U 1QM7A 1TXAA 1NORA 2ABXA 4FAOC 1CB9A 1IDLA 2HLRA 2HLQA 4XJJA 3QB4B 1BTEA 1LX5B 1IDIA 1IDGA 1LSIA 1FF4A 2JVEA 2CCXA 1NYUA 2GOOB 4IYEA 1FSCA 1TFSA 1G6MA 5DU1A 1KTZB 1JBDA 1PLOA 2GOOC 1CTXA 4UY2C 3U73U 1ONJA 4QTIU 3VTSA 1HOYA 1CREA 2MHYA 2MJ0A 1KXIA 1YWHA 1KBAA 2H8UA 5DZ5A 2MUOA 5EBXA 4EY8B 2MFAA 1KC4A 2MJ4A 2UX2A 1NTXA 3NH7A 3ERAA 4OM4A 4RUDA 5IMTD 1IK8A 2H62D 2ERAA 1LXGA 1F8UB 2UWRA 2PJYB 1CHVS 1ES7B 1IQ9A 4FAOE 2H5FA 1V6PA 2PJYC 1KBSA 3NDSA 2X8BB 1LXHA 1REWC 1CDQA 1NYSA 2QJAC 2CDXA 3FEVA 1CCQA 2CRSA 1H0JA 1IDHA 4BIKB 2FD6U 2I9BE 2OFSA 1CDRA 3PLCA 2BHIA 4DO8A 1KBTA 2LA1A 3LAQU 1S4YA 1BXPA 1RL5A 3HH7A 1JGKA 1QKDA 1FRAA 1IJCA 2J8BA 1LJZA 1NXBA 3BT2U 2NBTA 4OM5A 2QJBC 1ABTA 2QC1A 1I02A 2K3GA 2N99A 1CVOA 1TXBA 4LFTA 1FASA 2L03A 2MUPA 3KFDI 1ZADA 4P7UA 2LCRA 1FFJA 2H7ZA 1VB0A 1CXNA 3U74U 1RGJA 1M9ZA 4AEAA 6EBXA 1HAAA 1XT3A 3EVSC 1HAJA 1KS6A 1HC9A 2CRTA 1CODA 1MAHF 1QKEA 1CXOA 1ERGA 4HQPF 1NTNA 2H64B 2H62C 1DRSA 2L5SA 1CRFA 1W6BA 2H64C 3EBXA 2VLWA 1MR6A 1L4WA 5DO6A 2MJYA 3NEQA 3KFDE 1CDTA 1COEA 2CTXA 1NEAA 1B41B 1IKCA 1KU6B 2H7ZB 1FSSB 2BTXA 1CDSA 4ZQYA 5IMYC 1F94A 1UG4A 1KFHA 2JQPA 4BDTB 1KL8A 1JE9A 1ERAA 2QJ9C
chains in the Genus database with same CATH superfamily
1HC9B 1TGXA 3BT1U 1QM7A 1TXAA 1NORA 2ABXA 4FAOC 1CB9A 1IDLA 2HLRA 2HLQA 4XJJA 3QB4B 1BTEA 1LX5B 1IDIA 1IDGA 1LSIA 1FF4A 2JVEA 2CCXA 1NYUA 2GOOB 4IYEA 1FSCA 1TFSA 1G6MA 5DU1A 1KTZB 1JBDA 1PLOA 2GOOC 1CTXA 4UY2C 3U73U 1ONJA 4QTIU 3VTSA 1HOYA 1CREA 2MHYA 2MJ0A 1KXIA 1YWHA 1KBAA 2H8UA 5DZ5A 2MUOA 5EBXA 4EY8B 2MFAA 1KC4A 2MJ4A 2UX2A 1NTXA 3NH7A 3ERAA 4OM4A 4RUDA 5IMTD 1IK8A 2H62D 2ERAA 1LXGA 1F8UB 2UWRA 2PJYB 1CHVS 1ES7B 1IQ9A 4FAOE 2H5FA 1V6PA 2PJYC 1KBSA 3NDSA 2X8BB 1LXHA 1REWC 1CDQA 1NYSA 2QJAC 2CDXA 3FEVA 1CCQA 2CRSA 1H0JA 1IDHA 4BIKB 2FD6U 2I9BE 2OFSA 1CDRA 3PLCA 2BHIA 4DO8A 1KBTA 2LA1A 3LAQU 1S4YA 1BXPA 1RL5A 3HH7A 1JGKA 1QKDA 1FRAA 1IJCA 2J8BA 1LJZA 1NXBA 3BT2U 2NBTA 4OM5A 2QJBC 1ABTA 2QC1A 1I02A 2K3GA 2N99A 1CVOA 1TXBA 4LFTA 1FASA 2L03A 2MUPA 3KFDI 1ZADA 4P7UA 2LCRA 1FFJA 2H7ZA 1VB0A 1CXNA 3U74U 1RGJA 1M9ZA 4AEAA 6EBXA 1HAAA 1XT3A 3EVSC 1HAJA 1KS6A 4KSNA 1HC9A 2CRTA 1CODA 1MAHF 1QKEA 1CXOA 1ERGA 4HQPF 1NTNA 2H64B 2H62C 1DRSA 2L5SA 1CRFA 1W6BA 2H64C 3EBXA 2VLWA 1MR6A 1L4WA 5DO6A 2MJYA 3NEQA 3KFDE 1CDTA 1COEA 2CTXA 1NEAA 1B41B 1IKCA 1KU6B 2H7ZB 1FSSB 2BTXA 1CDSA 4ZQYA 5IMYC 1F94A 1UG4A 1KFHA 2JQPA 4BDTB 1KL8A 1JE9A 1ERAA 2QJ9C
chains in the Genus database with same CATH topology
1HC9B 1TGXA 3BT1U 1QM7A 1TXAA 1NORA 2ABXA 4FAOC 1CB9A 1IDLA 2HLRA 2HLQA 4XJJA 3QB4B 1BTEA 1LX5B 1IDIA 1IDGA 1LSIA 1FF4A 2JVEA 2CCXA 1NYUA 2GOOB 4IYEA 1FSCA 1TFSA 1G6MA 5DU1A 1KTZB 1JBDA 1PLOA 2GOOC 1CTXA 4UY2C 3U73U 1ONJA 4QTIU 3VTSA 1HOYA 1CREA 2MHYA 2MJ0A 1KXIA 1YWHA 1KBAA 2H8UA 5DZ5A 2MUOA 5EBXA 4EY8B 2MFAA 1KC4A 2MJ4A 2UX2A 1NTXA 3NH7A 3ERAA 4OM4A 4RUDA 5IMTD 1IK8A 2H62D 2ERAA 1LXGA 1F8UB 2UWRA 2PJYB 1CHVS 1ES7B 1IQ9A 4FAOE 2H5FA 1V6PA 2PJYC 1KBSA 3NDSA 2X8BB 1LXHA 1REWC 1CDQA 1NYSA 2QJAC 2CDXA 3FEVA 1CCQA 2CRSA 1H0JA 1IDHA 4BIKB 2FD6U 2I9BE 2OFSA 1CDRA 3PLCA 2BHIA 4DO8A 1KBTA 2LA1A 3LAQU 1S4YA 1BXPA 1RL5A 3HH7A 1JGKA 1QKDA 1FRAA 1IJCA 2J8BA 1LJZA 1NXBA 3BT2U 2NBTA 4OM5A 2QJBC 1ABTA 2QC1A 1I02A 2K3GA 2N99A 1CVOA 1TXBA 4LFTA 1FASA 2L03A 2MUPA 3KFDI 1ZADA 4P7UA 2LCRA 1FFJA 2H7ZA 1VB0A 1CXNA 3U74U 1RGJA 1M9ZA 4AEAA 6EBXA 1HAAA 1XT3A 3EVSC 1HAJA 1KS6A 4KSNA 1HC9A 2CRTA 1CODA 1MAHF 1QKEA 1CXOA 1ERGA 4HQPF 1NTNA 2H64B 2H62C 1DRSA 2L5SA 1CRFA 1W6BA 2H64C 3EBXA 2VLWA 1MR6A 1L4WA 5DO6A 2MJYA 3NEQA 3KFDE 1CDTA 1COEA 2CTXA 1NEAA 1B41B 1IKCA 1KU6B 2H7ZB 1FSSB 2BTXA 1CDSA 4ZQYA 5IMYC 1F94A 1UG4A 1KFHA 2JQPA 4BDTB 1KL8A 1JE9A 1ERAA 2QJ9C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HC9 B;  1TGX A;  3BT1 U;  1QM7 A;  1TXA A;  1NOR A;  2ABX A;  4FAO C;  1CB9 A;  1IDL A;  2HLR A;  2HLQ A;  4XJJ A;  3QB4 B;  1BTE A;  1LX5 B;  1IDI A;  1IDG A;  1LSI A;  1FF4 A;  2JVE A;  2CCX A;  1NYU A;  2GOO B;  4IYE A;  1FSC A;  1TFS A;  1G6M A;  5DU1 A;  1KTZ B;  1JBD A;  1PLO A;  2GOO C;  1CTX A;  4UY2 C;  3U73 U;  1ONJ A;  4QTI U;  3VTS A;  1HOY A;  1CRE A;  2MHY A;  2MJ0 A;  1KXI A;  1YWH A;  1KBA A;  2H8U A;  5DZ5 A;  2MUO A;  5EBX A;  4EY8 B;  2MFA A;  1KC4 A;  2MJ4 A;  2UX2 A;  1NTX A;  3NH7 A;  3ERA A;  4OM4 A;  4RUD A;  5IMT D;  1IK8 A;  2H62 D;  2ERA A;  1LXG A;  1F8U B;  2UWR A;  2PJY B;  1CHV S;  1ES7 B;  1IQ9 A;  4FAO E;  2H5F A;  1V6P A;  2PJY C;  1KBS A;  3NDS A;  2X8B B;  1LXH A;  1REW C;  1CDQ A;  1NYS A;  2QJA C;  2CDX A;  3FEV A;  1CCQ A;  2CRS A;  1H0J A;  1IDH A;  4BIK B;  2FD6 U;  2I9B E;  2OFS A;  1CDR A;  3PLC A;  2BHI A;  4DO8 A;  1KBT A;  2LA1 A;  3LAQ U;  1S4Y A;  1BXP A;  1RL5 A;  3HH7 A;  1JGK A;  1QKD A;  1FRA A;  1IJC A;  2J8B A;  1LJZ A;  1NXB A;  3BT2 U;  2NBT A;  4OM5 A;  2QJB C;  1ABT A;  2QC1 A;  1I02 A;  2K3G A;  2N99 A;  1CVO A;  1TXB A;  4LFT A;  1FAS A;  2L03 A;  2MUP A;  3KFD I;  1ZAD A;  4P7U A;  2LCR A;  1FFJ A;  2H7Z A;  1VB0 A;  1CXN A;  3U74 U;  1RGJ A;  1M9Z A;  4AEA A;  6EBX A;  1HAA A;  1XT3 A;  3EVS C;  1HAJ A;  1KS6 A;  1HC9 A;  2CRT A;  1COD A;  1MAH F;  1QKE A;  1CXO A;  1ERG A;  4HQP F;  1NTN A;  2H64 B;  2H62 C;  1DRS A;  2L5S A;  1CRF A;  1W6B A;  2H64 C;  3EBX A;  2VLW A;  1MR6 A;  1L4W A;  5DO6 A;  2MJY A;  3NEQ A;  3KFD E;  1CDT A;  1COE A;  2CTX A;  1NEA A;  1B41 B;  1IKC A;  1KU6 B;  2H7Z B;  1FSS B;  2BTX A;  1CDS A;  4ZQY A;  5IMY C;  1F94 A;  1UG4 A;  1KFH A;  2JQP A;  4BDT B;  1KL8 A;  1JE9 A;  1ERA A;  2QJ9 C; 
#chains in the Genus database with same CATH topology
 1HC9 B;  1TGX A;  3BT1 U;  1QM7 A;  1TXA A;  1NOR A;  2ABX A;  4FAO C;  1CB9 A;  1IDL A;  2HLR A;  2HLQ A;  4XJJ A;  3QB4 B;  1BTE A;  1LX5 B;  1IDI A;  1IDG A;  1LSI A;  1FF4 A;  2JVE A;  2CCX A;  1NYU A;  2GOO B;  4IYE A;  1FSC A;  1TFS A;  1G6M A;  5DU1 A;  1KTZ B;  1JBD A;  1PLO A;  2GOO C;  1CTX A;  4UY2 C;  3U73 U;  1ONJ A;  4QTI U;  3VTS A;  1HOY A;  1CRE A;  2MHY A;  2MJ0 A;  1KXI A;  1YWH A;  1KBA A;  2H8U A;  5DZ5 A;  2MUO A;  5EBX A;  4EY8 B;  2MFA A;  1KC4 A;  2MJ4 A;  2UX2 A;  1NTX A;  3NH7 A;  3ERA A;  4OM4 A;  4RUD A;  5IMT D;  1IK8 A;  2H62 D;  2ERA A;  1LXG A;  1F8U B;  2UWR A;  2PJY B;  1CHV S;  1ES7 B;  1IQ9 A;  4FAO E;  2H5F A;  1V6P A;  2PJY C;  1KBS A;  3NDS A;  2X8B B;  1LXH A;  1REW C;  1CDQ A;  1NYS A;  2QJA C;  2CDX A;  3FEV A;  1CCQ A;  2CRS A;  1H0J A;  1IDH A;  4BIK B;  2FD6 U;  2I9B E;  2OFS A;  1CDR A;  3PLC A;  2BHI A;  4DO8 A;  1KBT A;  2LA1 A;  3LAQ U;  1S4Y A;  1BXP A;  1RL5 A;  3HH7 A;  1JGK A;  1QKD A;  1FRA A;  1IJC A;  2J8B A;  1LJZ A;  1NXB A;  3BT2 U;  2NBT A;  4OM5 A;  2QJB C;  1ABT A;  2QC1 A;  1I02 A;  2K3G A;  2N99 A;  1CVO A;  1TXB A;  4LFT A;  1FAS A;  2L03 A;  2MUP A;  3KFD I;  1ZAD A;  4P7U A;  2LCR A;  1FFJ A;  2H7Z A;  1VB0 A;  1CXN A;  3U74 U;  1RGJ A;  1M9Z A;  4AEA A;  6EBX A;  1HAA A;  1XT3 A;  3EVS C;  1HAJ A;  1KS6 A;  4KSN A;  1HC9 A;  2CRT A;  1COD A;  1MAH F;  1QKE A;  1CXO A;  1ERG A;  4HQP F;  1NTN A;  2H64 B;  2H62 C;  1DRS A;  2L5S A;  1CRF A;  1W6B A;  2H64 C;  3EBX A;  2VLW A;  1MR6 A;  1L4W A;  5DO6 A;  2MJY A;  3NEQ A;  3KFD E;  1CDT A;  1COE A;  2CTX A;  1NEA A;  1B41 B;  1IKC A;  1KU6 B;  2H7Z B;  1FSS B;  2BTX A;  1CDS A;  4ZQY A;  5IMY C;  1F94 A;  1UG4 A;  1KFH A;  2JQP A;  4BDT B;  1KL8 A;  1JE9 A;  1ERA A;  2QJ9 C; 
#chains in the Genus database with same CATH homology
 1HC9 B;  1TGX A;  3BT1 U;  1QM7 A;  1TXA A;  1NOR A;  2ABX A;  4FAO C;  1CB9 A;  1IDL A;  2HLR A;  2HLQ A;  4XJJ A;  3QB4 B;  1BTE A;  1LX5 B;  1IDI A;  1IDG A;  1LSI A;  1FF4 A;  2JVE A;  2CCX A;  1NYU A;  2GOO B;  4IYE A;  1FSC A;  1TFS A;  1G6M A;  5DU1 A;  1KTZ B;  1JBD A;  1PLO A;  2GOO C;  1CTX A;  4UY2 C;  3U73 U;  1ONJ A;  4QTI U;  3VTS A;  1HOY A;  1CRE A;  2MHY A;  2MJ0 A;  1KXI A;  1YWH A;  1KBA A;  2H8U A;  5DZ5 A;  2MUO A;  5EBX A;  4EY8 B;  2MFA A;  1KC4 A;  2MJ4 A;  2UX2 A;  1NTX A;  3NH7 A;  3ERA A;  4OM4 A;  4RUD A;  5IMT D;  1IK8 A;  2H62 D;  2ERA A;  1LXG A;  1F8U B;  2UWR A;  2PJY B;  1CHV S;  1ES7 B;  1IQ9 A;  4FAO E;  2H5F A;  1V6P A;  2PJY C;  1KBS A;  3NDS A;  2X8B B;  1LXH A;  1REW C;  1CDQ A;  1NYS A;  2QJA C;  2CDX A;  3FEV A;  1CCQ A;  2CRS A;  1H0J A;  1IDH A;  4BIK B;  2FD6 U;  2I9B E;  2OFS A;  1CDR A;  3PLC A;  2BHI A;  4DO8 A;  1KBT A;  2LA1 A;  3LAQ U;  1S4Y A;  1BXP A;  1RL5 A;  3HH7 A;  1JGK A;  1QKD A;  1FRA A;  1IJC A;  2J8B A;  1LJZ A;  1NXB A;  3BT2 U;  2NBT A;  4OM5 A;  2QJB C;  1ABT A;  2QC1 A;  1I02 A;  2K3G A;  2N99 A;  1CVO A;  1TXB A;  4LFT A;  1FAS A;  2L03 A;  2MUP A;  3KFD I;  1ZAD A;  4P7U A;  2LCR A;  1FFJ A;  2H7Z A;  1VB0 A;  1CXN A;  3U74 U;  1RGJ A;  1M9Z A;  4AEA A;  6EBX A;  1HAA A;  1XT3 A;  3EVS C;  1HAJ A;  1KS6 A;  4KSN A;  1HC9 A;  2CRT A;  1COD A;  1MAH F;  1QKE A;  1CXO A;  1ERG A;  4HQP F;  1NTN A;  2H64 B;  2H62 C;  1DRS A;  2L5S A;  1CRF A;  1W6B A;  2H64 C;  3EBX A;  2VLW A;  1MR6 A;  1L4W A;  5DO6 A;  2MJY A;  3NEQ A;  3KFD E;  1CDT A;  1COE A;  2CTX A;  1NEA A;  1B41 B;  1IKC A;  1KU6 B;  2H7Z B;  1FSS B;  2BTX A;  1CDS A;  4ZQY A;  5IMY C;  1F94 A;  1UG4 A;  1KFH A;  2JQP A;  4BDT B;  1KL8 A;  1JE9 A;  1ERA A;  2QJ9 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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