The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
20
|
sequence length |
108
|
structure length |
108
|
Chain Sequence |
AGAVKFPQLCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPKCIMKEKKKPGETFFMCSCSSDECNDNIIF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Cytokine/cytokine receptor
|
| source organism |
Homo sapiens
|
| publication title |
Cooperative assembly of TGF-beta superfamily signaling complexes is mediated by two disparate mechanisms and distinct modes of receptor binding.
pubmed doi rcsb |
| molecule keywords |
Transforming growth factor beta-3
|
| total genus |
20
|
| structure length |
108
|
| sequence length |
108
|
| ec nomenclature |
ec
2.7.11.30: Receptor protein serine/threonine kinase. |
| pdb deposition date | 2007-04-16 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | CD59 | CD59 |
#chains in the Genus database with same CATH superfamily 2CCX A; 1RGJ A; 2N99 A; 2OFS A; 2PJY B; 1FFJ A; 1I02 A; 4UY2 C; 1CDQ A; 1MAH F; 1NYU A; 4RUD A; 2MUP A; 1PLO A; 1H0J A; 1QKE A; 3NDS A; 4FAO C; 1LJZ A; 1CXO A; 1BTE A; 1FRA A; 1KBT A; 2K3G A; 1TFS A; 2H7Z B; 2H8U A; 1BXP A; 4IYE A; 2X8B B; 2H64 B; 5DU1 A; 4AEA A; 1NOR A; 1JGK A; 2L03 A; 3VTS A; 2CRS A; 2MHY A; 6EBX A; 1HC9 B; 1CDR A; 2ABX A; 4QTI U; 1COE A; 2GOO B; 2H62 D; 1LX5 B; 1NEA A; 1ERA A; 3QB4 B; 1ZAD A; 1RL5 A; 2UX2 A; 1UG4 A; 3LAQ U; 1LXG A; 1L4W A; 1LXH A; 2LCR A; 1W6B A; 1CRE A; 1QKD A; 2L5S A; 4OM4 A; 1XT3 A; 1KBA A; 1KC4 A; 1F94 A; 1MR6 A; 2MJY A; 3U74 U; 1M9Z A; 1TGX A; 1HOY A; 1CCQ A; 1S4Y A; 3KFD E; 1KS6 A; 1FSS B; 5IMT D; 1KFH A; 1NYS A; 2H5F A; 4ZQY A; 2H7Z A; 1NXB A; 2UWR A; 4HQP F; 1CDS A; 3HH7 A; 1CVO A; 1KL8 A; 4DO8 A; 4FAO E; 1DRS A; 2I9B E; 1IDL A; 1HC9 A; 3ERA A; 2FD6 U; 2JVE A; 3FEV A; 5DZ5 A; 2MJ0 A; 3EBX A; 3BT1 U; 1HAJ A; 2QC1 A; 2JQP A; 2CRT A; 2QJB C; 1VB0 A; 1NTX A; 1TXB A; 1IDG A; 3KFD I; 1COD A; 2CDX A; 1B41 B; 5EBX A; 4BDT B; 2BTX A; 1FAS A; 1JBD A; 1FF4 A; 2PJY C; 2QJ9 C; 4LFT A; 1TXA A; 1NTN A; 2VLW A; 3NH7 A; 1IJC A; 1IQ9 A; 1IK8 A; 5DO6 A; 2QJA C; 1V6P A; 1IDH A; 1CTX A; 1LSI A; 2ERA A; 2NBT A; 2H64 C; 1JE9 A; 1REW C; 1ONJ A; 1CHV S; 1ERG A; 3BT2 U; 1CXN A; 1HAA A; 1KTZ B; 2CTX A; 1CRF A; 2MJ4 A; 2GOO C; 3U73 U; 1CB9 A; 4BIK B; 4P7U A; 4XJJ A; 1IKC A; 2MFA A; 2BHI A; 3PLC A; 1FSC A; 2HLR A; 2J8B A; 2LA1 A; 2H62 C; 2MUO A; 1G6M A; 1YWH A; 4OM5 A; 1QM7 A; 1IDI A; 1KBS A; 1KU6 B; 5IMY C; 4EY8 B; 1KXI A; 1ES7 B; 1F8U B; 2HLQ A; 1ABT A; 1CDT A; 3EVS C; 3NEQ A; #chains in the Genus database with same CATH topology 2CCX A; 1RGJ A; 2N99 A; 2OFS A; 2PJY B; 4KSN A; 1FFJ A; 1I02 A; 4UY2 C; 1CDQ A; 1MAH F; 1NYU A; 4RUD A; 2MUP A; 1PLO A; 1H0J A; 1QKE A; 3NDS A; 4FAO C; 1LJZ A; 1CXO A; 1BTE A; 1FRA A; 1KBT A; 2K3G A; 1TFS A; 2H7Z B; 2H8U A; 1BXP A; 4IYE A; 2X8B B; 2H64 B; 5DU1 A; 4AEA A; 1NOR A; 1JGK A; 2L03 A; 3VTS A; 2CRS A; 2MHY A; 6EBX A; 1HC9 B; 1CDR A; 2ABX A; 4QTI U; 1COE A; 2GOO B; 2H62 D; 1LX5 B; 1NEA A; 1ERA A; 3QB4 B; 1ZAD A; 1RL5 A; 2UX2 A; 1UG4 A; 3LAQ U; 1LXG A; 1L4W A; 1LXH A; 2LCR A; 1W6B A; 1CRE A; 1QKD A; 2L5S A; 4OM4 A; 1XT3 A; 1KBA A; 1KC4 A; 1F94 A; 1MR6 A; 2MJY A; 3U74 U; 1M9Z A; 1TGX A; 1HOY A; 1CCQ A; 1S4Y A; 3KFD E; 1KS6 A; 1FSS B; 5IMT D; 1KFH A; 1NYS A; 2H5F A; 4ZQY A; 2H7Z A; 1NXB A; 2UWR A; 4HQP F; 1CDS A; 3HH7 A; 1CVO A; 1KL8 A; 4DO8 A; 4FAO E; 1DRS A; 2I9B E; 1IDL A; 1HC9 A; 3ERA A; 2FD6 U; 2JVE A; 3FEV A; 5DZ5 A; 2MJ0 A; 3EBX A; 3BT1 U; 1HAJ A; 2QC1 A; 2JQP A; 2CRT A; 2QJB C; 1VB0 A; 1NTX A; 1TXB A; 1IDG A; 3KFD I; 1COD A; 2CDX A; 1B41 B; 5EBX A; 4BDT B; 2BTX A; 1FAS A; 1JBD A; 1FF4 A; 2PJY C; 2QJ9 C; 4LFT A; 1TXA A; 1NTN A; 2VLW A; 3NH7 A; 1IJC A; 1IQ9 A; 1IK8 A; 5DO6 A; 2QJA C; 1V6P A; 1IDH A; 1CTX A; 1LSI A; 2ERA A; 2NBT A; 2H64 C; 1JE9 A; 1REW C; 1ONJ A; 1CHV S; 1ERG A; 3BT2 U; 1CXN A; 1HAA A; 1KTZ B; 2CTX A; 1CRF A; 2MJ4 A; 2GOO C; 3U73 U; 1CB9 A; 4BIK B; 4P7U A; 4XJJ A; 1IKC A; 2MFA A; 2BHI A; 3PLC A; 1FSC A; 2HLR A; 2J8B A; 2LA1 A; 2H62 C; 2MUO A; 1G6M A; 1YWH A; 4OM5 A; 1QM7 A; 1IDI A; 1KBS A; 1KU6 B; 5IMY C; 4EY8 B; 1KXI A; 1ES7 B; 1F8U B; 2HLQ A; 1ABT A; 1CDT A; 3EVS C; 3NEQ A; #chains in the Genus database with same CATH homology 2CCX A; 1RGJ A; 2N99 A; 2OFS A; 2PJY B; 4KSN A; 1FFJ A; 1I02 A; 4UY2 C; 1CDQ A; 1MAH F; 1NYU A; 4RUD A; 2MUP A; 1PLO A; 1H0J A; 1QKE A; 3NDS A; 4FAO C; 1LJZ A; 1CXO A; 1BTE A; 1FRA A; 1KBT A; 2K3G A; 1TFS A; 2H7Z B; 2H8U A; 1BXP A; 4IYE A; 2X8B B; 2H64 B; 5DU1 A; 4AEA A; 1NOR A; 1JGK A; 2L03 A; 3VTS A; 2CRS A; 2MHY A; 6EBX A; 1HC9 B; 1CDR A; 2ABX A; 4QTI U; 1COE A; 2GOO B; 2H62 D; 1LX5 B; 1NEA A; 1ERA A; 3QB4 B; 1ZAD A; 1RL5 A; 2UX2 A; 1UG4 A; 3LAQ U; 1LXG A; 1L4W A; 1LXH A; 2LCR A; 1W6B A; 1CRE A; 1QKD A; 2L5S A; 4OM4 A; 1XT3 A; 1KBA A; 1KC4 A; 1F94 A; 1MR6 A; 2MJY A; 3U74 U; 1M9Z A; 1TGX A; 1HOY A; 1CCQ A; 1S4Y A; 3KFD E; 1KS6 A; 1FSS B; 5IMT D; 1KFH A; 1NYS A; 2H5F A; 4ZQY A; 2H7Z A; 1NXB A; 2UWR A; 4HQP F; 1CDS A; 3HH7 A; 1CVO A; 1KL8 A; 4DO8 A; 4FAO E; 1DRS A; 2I9B E; 1IDL A; 1HC9 A; 3ERA A; 2FD6 U; 2JVE A; 3FEV A; 5DZ5 A; 2MJ0 A; 3EBX A; 3BT1 U; 1HAJ A; 2QC1 A; 2JQP A; 2CRT A; 2QJB C; 1VB0 A; 1NTX A; 1TXB A; 1IDG A; 3KFD I; 1COD A; 2CDX A; 1B41 B; 5EBX A; 4BDT B; 2BTX A; 1FAS A; 1JBD A; 1FF4 A; 2PJY C; 2QJ9 C; 4LFT A; 1TXA A; 1NTN A; 2VLW A; 3NH7 A; 1IJC A; 1IQ9 A; 1IK8 A; 5DO6 A; 2QJA C; 1V6P A; 1IDH A; 1CTX A; 1LSI A; 2ERA A; 2NBT A; 2H64 C; 1JE9 A; 1REW C; 1ONJ A; 1CHV S; 1ERG A; 3BT2 U; 1CXN A; 1HAA A; 1KTZ B; 2CTX A; 1CRF A; 2MJ4 A; 2GOO C; 3U73 U; 1CB9 A; 4BIK B; 4P7U A; 4XJJ A; 1IKC A; 2MFA A; 2BHI A; 3PLC A; 1FSC A; 2HLR A; 2J8B A; 2LA1 A; 2H62 C; 2MUO A; 1G6M A; 1YWH A; 4OM5 A; 1QM7 A; 1IDI A; 1KBS A; 1KU6 B; 5IMY C; 4EY8 B; 1KXI A; 1ES7 B; 1F8U B; 2HLQ A; 1ABT A; 1CDT A; 3EVS C; 3NEQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
