6EBXA

Structure determination of a dimeric form of erabutoxin b, crystallized from thiocyanate solution
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
62
structure length
62
Chain Sequence
RICFNHQSSQPQTTKTCSPGESSCYHKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
source organism Laticauda semifasciata
publication title Structure determination of a dimeric form of erabutoxin-b, crystallized from a thiocyanate solution.
pubmed doi rcsb
molecule keywords ERABUTOXIN B
total genus 11
structure length 62
sequence length 62
chains with identical sequence B
ec nomenclature
pdb deposition date 1991-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 6ebxA00
1M9ZA 1BTEA 2GOOC 1REWC 2N99A 4XJJA 5IMTD 1LXGA 4ZQYA 2CDXA 1TFSA 1CXOA 5DZ5A 2QJBC 3U73U 1IQ9A 2H64C 1CDSA 4UY2C 4EY8B 2MUOA 4OM4A 1TGXA 1CVOA 1KU6B 2MHYA 1NXBA 3FEVA 1KXIA 1ES7B 2ABXA 4FAOE 1COEA 1FSSB 1QKDA 2BTXA 5IMYC 2I9BE 3NH7A 3NDSA 3LAQU 2J8BA 1ERGA 1RL5A 1JE9A 1MR6A 3HH7A 1S4YA 2X8BB 1NYSA 1KBTA 1JGKA 1CDTA 3QB4B 2L5SA 2UWRA 3PLCA 1G6MA 2CRTA 1NORA 1JBDA 2JVEA 4AEAA 2QC1A 3NEQA 4P7UA 1CDRA 1LXHA 2GOOB 3KFDE 1KC4A 1DRSA 1ONJA 1W6BA 1LX5B 2FD6U 2CRSA 1IDGA 4BIKB 1CCQA 2ERAA 2K3GA 3VTSA 1TXAA 1IK8A 2H7ZA 1H0JA 1CRFA 1IJCA 1NTNA 1CTXA 1VB0A 2HLRA 1ZADA 2QJ9C 2H5FA 2PJYC 3EBXA 1CREA 4BDTB 1LSIA 1HOYA 1F8UB 1BXPA 1PLOA 1FFJA 1QM7A 2QJAC 1UG4A 1MAHF 2H8UA 1CXNA 2MJ4A 3BT2U 1FF4A 1I02A 1FASA 2LA1A 4LFTA 1HC9B 5EBXA 1CB9A 1V6PA 1RGJA 1L4WA 5DO6A 3ERAA 1HC9A 2VLWA 2NBTA 1NTXA 1IDIA 1KTZB 1KBAA 1LJZA 1QKEA 2H7ZB 3BT1U 1CDQA 2LCRA 2H62D 2H64B 2MUPA 1B41B 5DU1A 1KFHA 2L03A 1NEAA 2MJ0A 6EBXA 4FAOC 1NYUA 2CTXA 4IYEA 2MJYA 1IKCA 3EVSC 2UX2A 4DO8A 1YWHA 1KL8A 4HQPF 1ERAA 1KS6A 2BHIA 1HAAA 4OM5A 2MFAA 3KFDI 1KBSA 2CCXA 1HAJA 1TXBA 4RUDA 3U74U 2H62C 1ABTA 2JQPA 1IDHA 2OFSA 1FRAA 1F94A 1CODA 2PJYB 1IDLA 1CHVS 1XT3A 1FSCA 2HLQA 4QTIU
chains in the Genus database with same CATH superfamily
1M9ZA 1BTEA 2GOOC 1REWC 2N99A 4XJJA 5IMTD 1LXGA 4ZQYA 2CDXA 1TFSA 1CXOA 5DZ5A 2QJBC 3U73U 1IQ9A 2H64C 1CDSA 4UY2C 4EY8B 2MUOA 4OM4A 1TGXA 1CVOA 1KU6B 2MHYA 1NXBA 3FEVA 1KXIA 1ES7B 2ABXA 4FAOE 1COEA 1FSSB 1QKDA 2BTXA 5IMYC 2I9BE 3NH7A 3NDSA 3LAQU 2J8BA 1ERGA 1RL5A 1JE9A 1MR6A 3HH7A 1S4YA 2X8BB 1NYSA 1KBTA 1JGKA 1CDTA 3QB4B 2L5SA 2UWRA 3PLCA 1G6MA 2CRTA 1NORA 1JBDA 2JVEA 4AEAA 2QC1A 3NEQA 4P7UA 1CDRA 1LXHA 2GOOB 3KFDE 1KC4A 1DRSA 1ONJA 1W6BA 1LX5B 2FD6U 2CRSA 1IDGA 4BIKB 1CCQA 2ERAA 2K3GA 3VTSA 1TXAA 1IK8A 2H7ZA 1H0JA 1CRFA 1IJCA 1NTNA 1CTXA 1VB0A 2HLRA 1ZADA 2QJ9C 2H5FA 2PJYC 3EBXA 1CREA 4BDTB 1LSIA 1HOYA 1F8UB 1BXPA 1PLOA 1FFJA 1QM7A 2QJAC 1UG4A 1MAHF 2H8UA 1CXNA 2MJ4A 3BT2U 1FF4A 1I02A 1FASA 2LA1A 4LFTA 1HC9B 5EBXA 1CB9A 1V6PA 1RGJA 1L4WA 5DO6A 3ERAA 1HC9A 2VLWA 2NBTA 1NTXA 1IDIA 1KTZB 1KBAA 1LJZA 1QKEA 2H7ZB 3BT1U 4KSNA 2LCRA 1CDQA 2H62D 2H64B 2MUPA 1B41B 5DU1A 1KFHA 2L03A 1NEAA 2MJ0A 6EBXA 4FAOC 1NYUA 2CTXA 4IYEA 2MJYA 1IKCA 3EVSC 2UX2A 4DO8A 1YWHA 1KL8A 4HQPF 1ERAA 1KS6A 2BHIA 1HAAA 4OM5A 2MFAA 3KFDI 1KBSA 2CCXA 1HAJA 1TXBA 4RUDA 3U74U 2H62C 1ABTA 2JQPA 1IDHA 2OFSA 1FRAA 1F94A 1CODA 2PJYB 1IDLA 1CHVS 1XT3A 1FSCA 2HLQA 4QTIU
chains in the Genus database with same CATH topology
1M9ZA 1BTEA 2GOOC 1REWC 2N99A 4XJJA 5IMTD 1LXGA 4ZQYA 2CDXA 1TFSA 1CXOA 5DZ5A 2QJBC 3U73U 1IQ9A 2H64C 1CDSA 4UY2C 4EY8B 2MUOA 4OM4A 1TGXA 1CVOA 1KU6B 2MHYA 1NXBA 3FEVA 1KXIA 1ES7B 2ABXA 4FAOE 1COEA 1FSSB 1QKDA 2BTXA 5IMYC 2I9BE 3NH7A 3NDSA 3LAQU 2J8BA 1ERGA 1RL5A 1JE9A 1MR6A 3HH7A 1S4YA 2X8BB 1NYSA 1KBTA 1JGKA 1CDTA 3QB4B 2L5SA 2UWRA 3PLCA 1G6MA 2CRTA 1NORA 1JBDA 2JVEA 4AEAA 2QC1A 3NEQA 4P7UA 1CDRA 1LXHA 2GOOB 3KFDE 1KC4A 1DRSA 1ONJA 1W6BA 1LX5B 2FD6U 2CRSA 1IDGA 4BIKB 1CCQA 2ERAA 2K3GA 3VTSA 1TXAA 1IK8A 2H7ZA 1H0JA 1CRFA 1IJCA 1NTNA 1CTXA 1VB0A 2HLRA 1ZADA 2QJ9C 2H5FA 2PJYC 3EBXA 1CREA 4BDTB 1LSIA 1HOYA 1F8UB 1BXPA 1PLOA 1FFJA 1QM7A 2QJAC 1UG4A 1MAHF 2H8UA 1CXNA 2MJ4A 3BT2U 1FF4A 1I02A 1FASA 2LA1A 4LFTA 1HC9B 5EBXA 1CB9A 1V6PA 1RGJA 1L4WA 5DO6A 3ERAA 1HC9A 2VLWA 2NBTA 1NTXA 1IDIA 1KTZB 1KBAA 1LJZA 1QKEA 2H7ZB 3BT1U 4KSNA 2LCRA 1CDQA 2H62D 2H64B 2MUPA 1B41B 5DU1A 1KFHA 2L03A 1NEAA 2MJ0A 6EBXA 4FAOC 1NYUA 2CTXA 4IYEA 2MJYA 1IKCA 3EVSC 2UX2A 4DO8A 1YWHA 1KL8A 4HQPF 1ERAA 1KS6A 2BHIA 1HAAA 4OM5A 2MFAA 3KFDI 1KBSA 2CCXA 1HAJA 1TXBA 4RUDA 3U74U 2H62C 1ABTA 2JQPA 1IDHA 2OFSA 1FRAA 1F94A 1CODA 2PJYB 1IDLA 1CHVS 1XT3A 1FSCA 2HLQA 4QTIU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M9Z A;  1BTE A;  2GOO C;  1REW C;  2N99 A;  4XJJ A;  5IMT D;  1LXG A;  4ZQY A;  2CDX A;  1TFS A;  1CXO A;  5DZ5 A;  2QJB C;  3U73 U;  1IQ9 A;  2H64 C;  1CDS A;  4UY2 C;  4EY8 B;  2MUO A;  4OM4 A;  1TGX A;  1CVO A;  1KU6 B;  2MHY A;  1NXB A;  3FEV A;  1KXI A;  1ES7 B;  2ABX A;  4FAO E;  1COE A;  1FSS B;  1QKD A;  2BTX A;  5IMY C;  2I9B E;  3NH7 A;  3NDS A;  3LAQ U;  2J8B A;  1ERG A;  1RL5 A;  1JE9 A;  1MR6 A;  3HH7 A;  1S4Y A;  2X8B B;  1NYS A;  1KBT A;  1JGK A;  1CDT A;  3QB4 B;  2L5S A;  2UWR A;  3PLC A;  1G6M A;  2CRT A;  1NOR A;  1JBD A;  2JVE A;  4AEA A;  2QC1 A;  3NEQ A;  4P7U A;  1CDR A;  1LXH A;  2GOO B;  3KFD E;  1KC4 A;  1DRS A;  1ONJ A;  1W6B A;  1LX5 B;  2FD6 U;  2CRS A;  1IDG A;  4BIK B;  1CCQ A;  2ERA A;  2K3G A;  3VTS A;  1TXA A;  1IK8 A;  2H7Z A;  1H0J A;  1CRF A;  1IJC A;  1NTN A;  1CTX A;  1VB0 A;  2HLR A;  1ZAD A;  2QJ9 C;  2H5F A;  2PJY C;  3EBX A;  1CRE A;  4BDT B;  1LSI A;  1HOY A;  1F8U B;  1BXP A;  1PLO A;  1FFJ A;  1QM7 A;  2QJA C;  1UG4 A;  1MAH F;  2H8U A;  1CXN A;  2MJ4 A;  3BT2 U;  1FF4 A;  1I02 A;  1FAS A;  2LA1 A;  4LFT A;  1HC9 B;  5EBX A;  1CB9 A;  1V6P A;  1RGJ A;  1L4W A;  5DO6 A;  3ERA A;  1HC9 A;  2VLW A;  2NBT A;  1NTX A;  1IDI A;  1KTZ B;  1KBA A;  1LJZ A;  1QKE A;  2H7Z B;  3BT1 U;  1CDQ A;  2LCR A;  2H62 D;  2H64 B;  2MUP A;  1B41 B;  5DU1 A;  1KFH A;  2L03 A;  1NEA A;  2MJ0 A;  6EBX A;  4FAO C;  1NYU A;  2CTX A;  4IYE A;  2MJY A;  1IKC A;  3EVS C;  2UX2 A;  4DO8 A;  1YWH A;  1KL8 A;  4HQP F;  1ERA A;  1KS6 A;  2BHI A;  1HAA A;  4OM5 A;  2MFA A;  3KFD I;  1KBS A;  2CCX A;  1HAJ A;  1TXB A;  4RUD A;  3U74 U;  2H62 C;  1ABT A;  2JQP A;  1IDH A;  2OFS A;  1FRA A;  1F94 A;  1COD A;  2PJY B;  1IDL A;  1CHV S;  1XT3 A;  1FSC A;  2HLQ A;  4QTI U; 
#chains in the Genus database with same CATH topology
 1M9Z A;  1BTE A;  2GOO C;  1REW C;  2N99 A;  4XJJ A;  5IMT D;  1LXG A;  4ZQY A;  2CDX A;  1TFS A;  1CXO A;  5DZ5 A;  2QJB C;  3U73 U;  1IQ9 A;  2H64 C;  1CDS A;  4UY2 C;  4EY8 B;  2MUO A;  4OM4 A;  1TGX A;  1CVO A;  1KU6 B;  2MHY A;  1NXB A;  3FEV A;  1KXI A;  1ES7 B;  2ABX A;  4FAO E;  1COE A;  1FSS B;  1QKD A;  2BTX A;  5IMY C;  2I9B E;  3NH7 A;  3NDS A;  3LAQ U;  2J8B A;  1ERG A;  1RL5 A;  1JE9 A;  1MR6 A;  3HH7 A;  1S4Y A;  2X8B B;  1NYS A;  1KBT A;  1JGK A;  1CDT A;  3QB4 B;  2L5S A;  2UWR A;  3PLC A;  1G6M A;  2CRT A;  1NOR A;  1JBD A;  2JVE A;  4AEA A;  2QC1 A;  3NEQ A;  4P7U A;  1CDR A;  1LXH A;  2GOO B;  3KFD E;  1KC4 A;  1DRS A;  1ONJ A;  1W6B A;  1LX5 B;  2FD6 U;  2CRS A;  1IDG A;  4BIK B;  1CCQ A;  2ERA A;  2K3G A;  3VTS A;  1TXA A;  1IK8 A;  2H7Z A;  1H0J A;  1CRF A;  1IJC A;  1NTN A;  1CTX A;  1VB0 A;  2HLR A;  1ZAD A;  2QJ9 C;  2H5F A;  2PJY C;  3EBX A;  1CRE A;  4BDT B;  1LSI A;  1HOY A;  1F8U B;  1BXP A;  1PLO A;  1FFJ A;  1QM7 A;  2QJA C;  1UG4 A;  1MAH F;  2H8U A;  1CXN A;  2MJ4 A;  3BT2 U;  1FF4 A;  1I02 A;  1FAS A;  2LA1 A;  4LFT A;  1HC9 B;  5EBX A;  1CB9 A;  1V6P A;  1RGJ A;  1L4W A;  5DO6 A;  3ERA A;  1HC9 A;  2VLW A;  2NBT A;  1NTX A;  1IDI A;  1KTZ B;  1KBA A;  1LJZ A;  1QKE A;  2H7Z B;  3BT1 U;  4KSN A;  2LCR A;  1CDQ A;  2H62 D;  2H64 B;  2MUP A;  1B41 B;  5DU1 A;  1KFH A;  2L03 A;  1NEA A;  2MJ0 A;  6EBX A;  4FAO C;  1NYU A;  2CTX A;  4IYE A;  2MJY A;  1IKC A;  3EVS C;  2UX2 A;  4DO8 A;  1YWH A;  1KL8 A;  4HQP F;  1ERA A;  1KS6 A;  2BHI A;  1HAA A;  4OM5 A;  2MFA A;  3KFD I;  1KBS A;  2CCX A;  1HAJ A;  1TXB A;  4RUD A;  3U74 U;  2H62 C;  1ABT A;  2JQP A;  1IDH A;  2OFS A;  1FRA A;  1F94 A;  1COD A;  2PJY B;  1IDL A;  1CHV S;  1XT3 A;  1FSC A;  2HLQ A;  4QTI U; 
#chains in the Genus database with same CATH homology
 1M9Z A;  1BTE A;  2GOO C;  1REW C;  2N99 A;  4XJJ A;  5IMT D;  1LXG A;  4ZQY A;  2CDX A;  1TFS A;  1CXO A;  5DZ5 A;  2QJB C;  3U73 U;  1IQ9 A;  2H64 C;  1CDS A;  4UY2 C;  4EY8 B;  2MUO A;  4OM4 A;  1TGX A;  1CVO A;  1KU6 B;  2MHY A;  1NXB A;  3FEV A;  1KXI A;  1ES7 B;  2ABX A;  4FAO E;  1COE A;  1FSS B;  1QKD A;  2BTX A;  5IMY C;  2I9B E;  3NH7 A;  3NDS A;  3LAQ U;  2J8B A;  1ERG A;  1RL5 A;  1JE9 A;  1MR6 A;  3HH7 A;  1S4Y A;  2X8B B;  1NYS A;  1KBT A;  1JGK A;  1CDT A;  3QB4 B;  2L5S A;  2UWR A;  3PLC A;  1G6M A;  2CRT A;  1NOR A;  1JBD A;  2JVE A;  4AEA A;  2QC1 A;  3NEQ A;  4P7U A;  1CDR A;  1LXH A;  2GOO B;  3KFD E;  1KC4 A;  1DRS A;  1ONJ A;  1W6B A;  1LX5 B;  2FD6 U;  2CRS A;  1IDG A;  4BIK B;  1CCQ A;  2ERA A;  2K3G A;  3VTS A;  1TXA A;  1IK8 A;  2H7Z A;  1H0J A;  1CRF A;  1IJC A;  1NTN A;  1CTX A;  1VB0 A;  2HLR A;  1ZAD A;  2QJ9 C;  2H5F A;  2PJY C;  3EBX A;  1CRE A;  4BDT B;  1LSI A;  1HOY A;  1F8U B;  1BXP A;  1PLO A;  1FFJ A;  1QM7 A;  2QJA C;  1UG4 A;  1MAH F;  2H8U A;  1CXN A;  2MJ4 A;  3BT2 U;  1FF4 A;  1I02 A;  1FAS A;  2LA1 A;  4LFT A;  1HC9 B;  5EBX A;  1CB9 A;  1V6P A;  1RGJ A;  1L4W A;  5DO6 A;  3ERA A;  1HC9 A;  2VLW A;  2NBT A;  1NTX A;  1IDI A;  1KTZ B;  1KBA A;  1LJZ A;  1QKE A;  2H7Z B;  3BT1 U;  4KSN A;  2LCR A;  1CDQ A;  2H62 D;  2H64 B;  2MUP A;  1B41 B;  5DU1 A;  1KFH A;  2L03 A;  1NEA A;  2MJ0 A;  6EBX A;  4FAO C;  1NYU A;  2CTX A;  4IYE A;  2MJY A;  1IKC A;  3EVS C;  2UX2 A;  4DO8 A;  1YWH A;  1KL8 A;  4HQP F;  1ERA A;  1KS6 A;  2BHI A;  1HAA A;  4OM5 A;  2MFA A;  3KFD I;  1KBS A;  2CCX A;  1HAJ A;  1TXB A;  4RUD A;  3U74 U;  2H62 C;  1ABT A;  2JQP A;  1IDH A;  2OFS A;  1FRA A;  1F94 A;  1COD A;  2PJY B;  1IDL A;  1CHV S;  1XT3 A;  1FSC A;  2HLQ A;  4QTI U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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