1QKDA

Erabutoxin
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
62
structure length
62
Chain Sequence
RICFNHQSSQPQTTKTCSPGESSCYNKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Neurotoxin
molecule keywords ERABUTOXIN A
publication title Structure of dimeric and monomeric erabutoxin a refined at 1.5 A resolution.
pubmed doi rcsb
total genus 12
structure length 62
sequence length 62
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1qkdA00
2H62D 2JQPA 2VLWA 1IK8A 5IMTD 1ES7B 1HC9B 1CTXA 2NBTA 1TXAA 1IDLA 2MJYA 1NYUA 1RGJA 2ABXA 1PLOA 1COEA 2MHYA 3EVSC 2OFSA 3FEVA 2GOOC 5DU1A 4LFTA 3U74U 4P7UA 1NEAA 1NORA 1HC9A 2FD6U 1IQ9A 1CRFA 2MFAA 1IJCA 1JE9A 2H64C 3BT1U 3QB4B 6EBXA 1ERGA 1KFHA 1NTNA 1BTEA 1JGKA 1KC4A 1LX5B 3KFDI 1L4WA 2H7ZB 1QKEA 1TGXA 1CXOA 4HQPF 1F94A 2MJ4A 2PJYC 3KFDE 1CVOA 2BTXA 1F8UB 3HH7A 1TXBA 1FFJA 5DZ5A 2H7ZA 3NEQA 1DRSA 1NTXA 1ONJA 3NDSA 1IDHA 1ERAA 1V6PA 2UWRA 1CDQA 2H5FA 4EY8B 2LA1A 1CDRA 2QJ9C 1M9ZA 1QKDA 3ERAA 1S4YA 4ZQYA 3EBXA 1IKCA 1IDGA 2MUOA 1CB9A 4RUDA 2J8BA 1HAAA 2MUPA 1CODA 2JVEA 4AEAA 4XJJA 2L03A 1HOYA 2GOOB 2H62C 2CCXA 2N99A 1FSSB 1FASA 1W6BA 1KL8A 2UX2A 4FAOE 2MJ0A 2CDXA 1KXIA 2CRTA 2H64B 3NH7A 4OM4A 4QTIU 1FRAA 1KU6B 1KBSA 1REWC 1I02A 4BDTB 1B41B 2BHIA 1CDTA 2CRSA 4DO8A 1LXGA 2ERAA 1JBDA 1CHVS 1ZADA 1FSCA 3U73U 1FF4A 1HAJA 1XT3A 1CXNA 1CCQA 1CDSA 1CREA 1YWHA 2QJAC 3LAQU 1LJZA 3PLCA 1VB0A 1NXBA 1IDIA 2K3GA 4BIKB 2H8UA 4IYEA 1MAHF 2HLQA 1KTZB 5IMYC 2QC1A 2LCRA 1H0JA 1LSIA 1RL5A 1MR6A 1UG4A 4UY2C 2QJBC 4FAOC 5EBXA 1KS6A 1LXHA 5DO6A 2CTXA 1ABTA 2I9BE 2L5SA 4OM5A 1G6MA 1QM7A 1KBAA 1KBTA 1TFSA 2PJYB 1BXPA 3BT2U 3VTSA 2X8BB 1NYSA 2HLRA
chains in the Genus database with same CATH superfamily
2H62D 2JQPA 2VLWA 1IK8A 5IMTD 1ES7B 1HC9B 1CTXA 2NBTA 1TXAA 1IDLA 2MJYA 1NYUA 1RGJA 2ABXA 1PLOA 1COEA 2MHYA 3EVSC 2OFSA 3FEVA 2GOOC 5DU1A 4LFTA 3U74U 4P7UA 1NEAA 1NORA 1HC9A 2FD6U 1IQ9A 1CRFA 2MFAA 1IJCA 1JE9A 2H64C 3BT1U 3QB4B 6EBXA 1ERGA 4KSNA 1KFHA 1NTNA 1BTEA 1JGKA 1KC4A 1LX5B 3KFDI 1L4WA 2H7ZB 1QKEA 1TGXA 1CXOA 4HQPF 1F94A 2MJ4A 2PJYC 3KFDE 1CVOA 2BTXA 1F8UB 3HH7A 1TXBA 1FFJA 5DZ5A 2H7ZA 3NEQA 1DRSA 1NTXA 1ONJA 3NDSA 1IDHA 1ERAA 1V6PA 2UWRA 1CDQA 2H5FA 4EY8B 2LA1A 1CDRA 2QJ9C 1M9ZA 1QKDA 3ERAA 1S4YA 4ZQYA 3EBXA 1IKCA 1IDGA 2MUOA 1CB9A 4RUDA 2J8BA 1HAAA 2MUPA 1CODA 2JVEA 4AEAA 4XJJA 2L03A 1HOYA 2GOOB 2H62C 2CCXA 2N99A 1FSSB 1FASA 1W6BA 1KL8A 2UX2A 4FAOE 2MJ0A 2CDXA 1KXIA 2CRTA 2H64B 3NH7A 4OM4A 4QTIU 1FRAA 1KU6B 1KBSA 1REWC 1I02A 4BDTB 1B41B 2BHIA 1CDTA 2CRSA 4DO8A 1LXGA 2ERAA 1JBDA 1CHVS 1ZADA 1FSCA 3U73U 1FF4A 1HAJA 1XT3A 1CXNA 1CCQA 1CDSA 1CREA 1YWHA 2QJAC 3LAQU 1LJZA 3PLCA 1VB0A 1NXBA 1IDIA 2K3GA 4BIKB 2H8UA 4IYEA 1MAHF 2HLQA 1KTZB 5IMYC 2QC1A 2LCRA 1H0JA 1LSIA 1RL5A 1MR6A 1UG4A 4UY2C 2QJBC 4FAOC 5EBXA 1KS6A 1LXHA 5DO6A 2CTXA 1ABTA 2I9BE 2L5SA 4OM5A 1G6MA 1QM7A 1KBAA 1KBTA 1TFSA 2PJYB 1BXPA 3BT2U 3VTSA 2X8BB 1NYSA 2HLRA
chains in the Genus database with same CATH topology
2H62D 2JQPA 2VLWA 1IK8A 5IMTD 1ES7B 1HC9B 1CTXA 2NBTA 1TXAA 1IDLA 2MJYA 1NYUA 1RGJA 2ABXA 1PLOA 1COEA 2MHYA 3EVSC 2OFSA 3FEVA 2GOOC 5DU1A 4LFTA 3U74U 4P7UA 1NEAA 1NORA 1HC9A 2FD6U 1IQ9A 1CRFA 2MFAA 1IJCA 1JE9A 2H64C 3BT1U 3QB4B 6EBXA 1ERGA 4KSNA 1KFHA 1NTNA 1BTEA 1JGKA 1KC4A 1LX5B 3KFDI 1L4WA 2H7ZB 1QKEA 1TGXA 1CXOA 4HQPF 1F94A 2MJ4A 2PJYC 3KFDE 1CVOA 2BTXA 1F8UB 3HH7A 1TXBA 1FFJA 5DZ5A 2H7ZA 3NEQA 1DRSA 1NTXA 1ONJA 3NDSA 1IDHA 1ERAA 1V6PA 2UWRA 1CDQA 2H5FA 4EY8B 2LA1A 1CDRA 2QJ9C 1M9ZA 1QKDA 3ERAA 1S4YA 4ZQYA 3EBXA 1IKCA 1IDGA 2MUOA 1CB9A 4RUDA 2J8BA 1HAAA 2MUPA 1CODA 2JVEA 4AEAA 4XJJA 2L03A 1HOYA 2GOOB 2H62C 2CCXA 2N99A 1FSSB 1FASA 1W6BA 1KL8A 2UX2A 4FAOE 2MJ0A 2CDXA 1KXIA 2CRTA 2H64B 3NH7A 4OM4A 4QTIU 1FRAA 1KU6B 1KBSA 1REWC 1I02A 4BDTB 1B41B 2BHIA 1CDTA 2CRSA 4DO8A 1LXGA 2ERAA 1JBDA 1CHVS 1ZADA 1FSCA 3U73U 1FF4A 1HAJA 1XT3A 1CXNA 1CCQA 1CDSA 1CREA 1YWHA 2QJAC 3LAQU 1LJZA 3PLCA 1VB0A 1NXBA 1IDIA 2K3GA 4BIKB 2H8UA 4IYEA 1MAHF 2HLQA 1KTZB 5IMYC 2QC1A 2LCRA 1H0JA 1LSIA 1RL5A 1MR6A 1UG4A 4UY2C 2QJBC 4FAOC 5EBXA 1KS6A 1LXHA 5DO6A 2CTXA 1ABTA 2I9BE 2L5SA 4OM5A 1G6MA 1QM7A 1KBAA 1KBTA 1TFSA 2PJYB 1BXPA 3BT2U 3VTSA 2X8BB 1NYSA 2HLRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H62 D;  2JQP A;  2VLW A;  1IK8 A;  5IMT D;  1ES7 B;  1HC9 B;  1CTX A;  2NBT A;  1TXA A;  1IDL A;  2MJY A;  1NYU A;  1RGJ A;  2ABX A;  1PLO A;  1COE A;  2MHY A;  3EVS C;  2OFS A;  3FEV A;  2GOO C;  5DU1 A;  4LFT A;  3U74 U;  4P7U A;  1NEA A;  1NOR A;  1HC9 A;  2FD6 U;  1IQ9 A;  1CRF A;  2MFA A;  1IJC A;  1JE9 A;  2H64 C;  3BT1 U;  3QB4 B;  6EBX A;  1ERG A;  1KFH A;  1NTN A;  1BTE A;  1JGK A;  1KC4 A;  1LX5 B;  3KFD I;  1L4W A;  2H7Z B;  1QKE A;  1TGX A;  1CXO A;  4HQP F;  1F94 A;  2MJ4 A;  2PJY C;  3KFD E;  1CVO A;  2BTX A;  1F8U B;  3HH7 A;  1TXB A;  1FFJ A;  5DZ5 A;  2H7Z A;  3NEQ A;  1DRS A;  1NTX A;  1ONJ A;  3NDS A;  1IDH A;  1ERA A;  1V6P A;  2UWR A;  1CDQ A;  2H5F A;  4EY8 B;  2LA1 A;  1CDR A;  2QJ9 C;  1M9Z A;  1QKD A;  3ERA A;  1S4Y A;  4ZQY A;  3EBX A;  1IKC A;  1IDG A;  2MUO A;  1CB9 A;  4RUD A;  2J8B A;  1HAA A;  2MUP A;  1COD A;  2JVE A;  4AEA A;  4XJJ A;  2L03 A;  1HOY A;  2GOO B;  2H62 C;  2CCX A;  2N99 A;  1FSS B;  1FAS A;  1W6B A;  1KL8 A;  2UX2 A;  4FAO E;  2MJ0 A;  2CDX A;  1KXI A;  2CRT A;  2H64 B;  3NH7 A;  4OM4 A;  4QTI U;  1FRA A;  1KU6 B;  1KBS A;  1REW C;  1I02 A;  4BDT B;  1B41 B;  2BHI A;  1CDT A;  2CRS A;  4DO8 A;  1LXG A;  2ERA A;  1JBD A;  1CHV S;  1ZAD A;  1FSC A;  3U73 U;  1FF4 A;  1HAJ A;  1XT3 A;  1CXN A;  1CCQ A;  1CDS A;  1CRE A;  1YWH A;  2QJA C;  3LAQ U;  1LJZ A;  3PLC A;  1VB0 A;  1NXB A;  1IDI A;  2K3G A;  4BIK B;  2H8U A;  4IYE A;  1MAH F;  2HLQ A;  1KTZ B;  5IMY C;  2QC1 A;  2LCR A;  1H0J A;  1LSI A;  1RL5 A;  1MR6 A;  1UG4 A;  4UY2 C;  2QJB C;  4FAO C;  5EBX A;  1KS6 A;  1LXH A;  5DO6 A;  2CTX A;  1ABT A;  2I9B E;  2L5S A;  4OM5 A;  1G6M A;  1QM7 A;  1KBA A;  1KBT A;  1TFS A;  2PJY B;  1BXP A;  3BT2 U;  3VTS A;  2X8B B;  1NYS A;  2HLR A; 
#chains in the Genus database with same CATH topology
 2H62 D;  2JQP A;  2VLW A;  1IK8 A;  5IMT D;  1ES7 B;  1HC9 B;  1CTX A;  2NBT A;  1TXA A;  1IDL A;  2MJY A;  1NYU A;  1RGJ A;  2ABX A;  1PLO A;  1COE A;  2MHY A;  3EVS C;  2OFS A;  3FEV A;  2GOO C;  5DU1 A;  4LFT A;  3U74 U;  4P7U A;  1NEA A;  1NOR A;  1HC9 A;  2FD6 U;  1IQ9 A;  1CRF A;  2MFA A;  1IJC A;  1JE9 A;  2H64 C;  3BT1 U;  3QB4 B;  6EBX A;  1ERG A;  4KSN A;  1KFH A;  1NTN A;  1BTE A;  1JGK A;  1KC4 A;  1LX5 B;  3KFD I;  1L4W A;  2H7Z B;  1QKE A;  1TGX A;  1CXO A;  4HQP F;  1F94 A;  2MJ4 A;  2PJY C;  3KFD E;  1CVO A;  2BTX A;  1F8U B;  3HH7 A;  1TXB A;  1FFJ A;  5DZ5 A;  2H7Z A;  3NEQ A;  1DRS A;  1NTX A;  1ONJ A;  3NDS A;  1IDH A;  1ERA A;  1V6P A;  2UWR A;  1CDQ A;  2H5F A;  4EY8 B;  2LA1 A;  1CDR A;  2QJ9 C;  1M9Z A;  1QKD A;  3ERA A;  1S4Y A;  4ZQY A;  3EBX A;  1IKC A;  1IDG A;  2MUO A;  1CB9 A;  4RUD A;  2J8B A;  1HAA A;  2MUP A;  1COD A;  2JVE A;  4AEA A;  4XJJ A;  2L03 A;  1HOY A;  2GOO B;  2H62 C;  2CCX A;  2N99 A;  1FSS B;  1FAS A;  1W6B A;  1KL8 A;  2UX2 A;  4FAO E;  2MJ0 A;  2CDX A;  1KXI A;  2CRT A;  2H64 B;  3NH7 A;  4OM4 A;  4QTI U;  1FRA A;  1KU6 B;  1KBS A;  1REW C;  1I02 A;  4BDT B;  1B41 B;  2BHI A;  1CDT A;  2CRS A;  4DO8 A;  1LXG A;  2ERA A;  1JBD A;  1CHV S;  1ZAD A;  1FSC A;  3U73 U;  1FF4 A;  1HAJ A;  1XT3 A;  1CXN A;  1CCQ A;  1CDS A;  1CRE A;  1YWH A;  2QJA C;  3LAQ U;  1LJZ A;  3PLC A;  1VB0 A;  1NXB A;  1IDI A;  2K3G A;  4BIK B;  2H8U A;  4IYE A;  1MAH F;  2HLQ A;  1KTZ B;  5IMY C;  2QC1 A;  2LCR A;  1H0J A;  1LSI A;  1RL5 A;  1MR6 A;  1UG4 A;  4UY2 C;  2QJB C;  4FAO C;  5EBX A;  1KS6 A;  1LXH A;  5DO6 A;  2CTX A;  1ABT A;  2I9B E;  2L5S A;  4OM5 A;  1G6M A;  1QM7 A;  1KBA A;  1KBT A;  1TFS A;  2PJY B;  1BXP A;  3BT2 U;  3VTS A;  2X8B B;  1NYS A;  2HLR A; 
#chains in the Genus database with same CATH homology
 2H62 D;  2JQP A;  2VLW A;  1IK8 A;  5IMT D;  1ES7 B;  1HC9 B;  1CTX A;  2NBT A;  1TXA A;  1IDL A;  2MJY A;  1NYU A;  1RGJ A;  2ABX A;  1PLO A;  1COE A;  2MHY A;  3EVS C;  2OFS A;  3FEV A;  2GOO C;  5DU1 A;  4LFT A;  3U74 U;  4P7U A;  1NEA A;  1NOR A;  1HC9 A;  2FD6 U;  1IQ9 A;  1CRF A;  2MFA A;  1IJC A;  1JE9 A;  2H64 C;  3BT1 U;  3QB4 B;  6EBX A;  1ERG A;  4KSN A;  1KFH A;  1NTN A;  1BTE A;  1JGK A;  1KC4 A;  1LX5 B;  3KFD I;  1L4W A;  2H7Z B;  1QKE A;  1TGX A;  1CXO A;  4HQP F;  1F94 A;  2MJ4 A;  2PJY C;  3KFD E;  1CVO A;  2BTX A;  1F8U B;  3HH7 A;  1TXB A;  1FFJ A;  5DZ5 A;  2H7Z A;  3NEQ A;  1DRS A;  1NTX A;  1ONJ A;  3NDS A;  1IDH A;  1ERA A;  1V6P A;  2UWR A;  1CDQ A;  2H5F A;  4EY8 B;  2LA1 A;  1CDR A;  2QJ9 C;  1M9Z A;  1QKD A;  3ERA A;  1S4Y A;  4ZQY A;  3EBX A;  1IKC A;  1IDG A;  2MUO A;  1CB9 A;  4RUD A;  2J8B A;  1HAA A;  2MUP A;  1COD A;  2JVE A;  4AEA A;  4XJJ A;  2L03 A;  1HOY A;  2GOO B;  2H62 C;  2CCX A;  2N99 A;  1FSS B;  1FAS A;  1W6B A;  1KL8 A;  2UX2 A;  4FAO E;  2MJ0 A;  2CDX A;  1KXI A;  2CRT A;  2H64 B;  3NH7 A;  4OM4 A;  4QTI U;  1FRA A;  1KU6 B;  1KBS A;  1REW C;  1I02 A;  4BDT B;  1B41 B;  2BHI A;  1CDT A;  2CRS A;  4DO8 A;  1LXG A;  2ERA A;  1JBD A;  1CHV S;  1ZAD A;  1FSC A;  3U73 U;  1FF4 A;  1HAJ A;  1XT3 A;  1CXN A;  1CCQ A;  1CDS A;  1CRE A;  1YWH A;  2QJA C;  3LAQ U;  1LJZ A;  3PLC A;  1VB0 A;  1NXB A;  1IDI A;  2K3G A;  4BIK B;  2H8U A;  4IYE A;  1MAH F;  2HLQ A;  1KTZ B;  5IMY C;  2QC1 A;  2LCR A;  1H0J A;  1LSI A;  1RL5 A;  1MR6 A;  1UG4 A;  4UY2 C;  2QJB C;  4FAO C;  5EBX A;  1KS6 A;  1LXH A;  5DO6 A;  2CTX A;  1ABT A;  2I9B E;  2L5S A;  4OM5 A;  1G6M A;  1QM7 A;  1KBA A;  1KBT A;  1TFS A;  2PJY B;  1BXP A;  3BT2 U;  3VTS A;  2X8B B;  1NYS A;  2HLR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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