1CHVS

Elucidation of the solution structure of cardiotoxin analogue v from the taiwan cobra (naja naja atra) venom
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
60
structure length
60
Chain Sequence
LKCNKLVPLFYKTCPAGKNLCYKMFMVSNKMVPVKRGCIDVCPKSSLLVKYVCCNTDRCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords PROTEIN (CARDIOTOXIN ANALOGUE V)
publication title Elucidation of the solution structure of cardiotoxin analogue V from the Taiwan cobra (Naja naja atra)--identification of structural features important for the lethal action of snake venom cardiotoxins
pubmed rcsb
total genus 7
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 1999-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1chvS00
5DU1A 1LJZA 3PLCA 1YWHA 1LSIA 1FRAA 2GOOB 1IK8A 2CTXA 1PLOA 1FSSB 2HLRA 5IMTD 1LXHA 1NYUA 2J8BA 1CODA 1KFHA 3BT2U 2H5FA 1L4WA 2BHIA 2UX2A 1B41B 1ONJA 1LXGA 4UY2C 1FASA 5DZ5A 1KC4A 1ERGA 2MJ4A 1CDTA 4IYEA 1BXPA 2L5SA 1KBTA 1W6BA 1QM7A 2I9BE 2LCRA 2QC1A 1S4YA 1G6MA 1ZADA 2HLQA 1MR6A 1KTZB 3NEQA 1ES7B 2GOOC 1HAJA 1CDSA 1DRSA 2H64C 1NORA 2H64B 2CDXA 3U74U 1NEAA 2CRSA 2CRTA 1CRFA 2NBTA 1TXAA 4BIKB 1RGJA 2ABXA 2H62C 5DO6A 2JVEA 5EBXA 4XJJA 1IJCA 3KFDE 1ERAA 4OM5A 4BDTB 1XT3A 1BTEA 2BTXA 1JE9A 1NTNA 4OM4A 1KBAA 1TXBA 1ABTA 2MHYA 2CCXA 3ERAA 2QJAC 1CREA 1F94A 1NXBA 3EBXA 4AEAA 2H7ZA 2ERAA 1CDRA 6EBXA 1NYSA 1QKDA 1CVOA 1FF4A 1COEA 1I02A 1CTXA 3LAQU 1M9ZA 1NTXA 3QB4B 2QJ9C 2UWRA 1IDIA 2L03A 2PJYC 4FAOC 1HOYA 1REWC 1HC9A 1IDGA 2PJYB 1RL5A 2QJBC 1FFJA 2OFSA 1IDLA 5IMYC 2MJYA 1V6PA 2VLWA 4FAOE 4P7UA 2N99A 1QKEA 3NH7A 2H7ZB 1UG4A 2MFAA 1HAAA 1MAHF 3NDSA 2X8BB 1CB9A 1IDHA 4DO8A 2JQPA 1FSCA 2FD6U 4LFTA 2MJ0A 1KBSA 1CDQA 1KXIA 3FEVA 4RUDA 1CXNA 1TGXA 3HH7A 1CHVS 2H8UA 3VTSA 1HC9B 2MUOA 1JGKA 1VB0A 1CCQA 1LX5B 2MUPA 4ZQYA 1KL8A 1CXOA 2K3GA 1H0JA 2LA1A 1JBDA 1IQ9A 3EVSC 4EY8B 1KU6B 4QTIU 4HQPF 1F8UB 1TFSA 1KS6A 3BT1U 1IKCA 3U73U 2H62D 3KFDI
chains in the Genus database with same CATH superfamily
5DU1A 1LJZA 3PLCA 1YWHA 1LSIA 1FRAA 2GOOB 1IK8A 2CTXA 1PLOA 1FSSB 2HLRA 5IMTD 1LXHA 1NYUA 2J8BA 1CODA 1KFHA 3BT2U 2H5FA 1L4WA 2BHIA 2UX2A 1B41B 1ONJA 1LXGA 4UY2C 1FASA 5DZ5A 1KC4A 1ERGA 2MJ4A 1CDTA 4IYEA 1BXPA 2L5SA 1KBTA 1W6BA 1QM7A 2I9BE 2LCRA 2QC1A 1S4YA 1G6MA 1ZADA 2HLQA 1MR6A 1KTZB 3NEQA 1ES7B 2GOOC 1HAJA 1CDSA 1DRSA 2H64C 1NORA 2H64B 2CDXA 3U74U 1NEAA 2CRSA 2CRTA 1CRFA 2NBTA 1TXAA 4BIKB 1RGJA 2ABXA 2H62C 5DO6A 2JVEA 5EBXA 4KSNA 4XJJA 1IJCA 3KFDE 1ERAA 4OM5A 4BDTB 1XT3A 1BTEA 2BTXA 1JE9A 1NTNA 4OM4A 1KBAA 1TXBA 1ABTA 2MHYA 2CCXA 3ERAA 2QJAC 1CREA 1F94A 1NXBA 3EBXA 4AEAA 2H7ZA 2ERAA 1CDRA 6EBXA 1NYSA 1QKDA 1CVOA 1FF4A 1COEA 1I02A 1CTXA 3LAQU 1M9ZA 1NTXA 3QB4B 2QJ9C 2UWRA 1IDIA 2L03A 2PJYC 4FAOC 1HOYA 1REWC 1HC9A 1IDGA 2PJYB 1RL5A 2QJBC 1FFJA 2OFSA 1IDLA 5IMYC 2MJYA 1V6PA 2VLWA 4FAOE 4P7UA 2N99A 1QKEA 3NH7A 2H7ZB 1UG4A 2MFAA 1HAAA 1MAHF 3NDSA 2X8BB 1CB9A 1IDHA 4DO8A 2JQPA 1FSCA 2FD6U 4LFTA 2MJ0A 1KBSA 1CDQA 1KXIA 3FEVA 4RUDA 1CXNA 1TGXA 3HH7A 1CHVS 2H8UA 3VTSA 1HC9B 2MUOA 1JGKA 1VB0A 1CCQA 1LX5B 2MUPA 4ZQYA 1KL8A 1CXOA 2K3GA 1H0JA 2LA1A 1JBDA 1IQ9A 3EVSC 4EY8B 1KU6B 4QTIU 4HQPF 1F8UB 1TFSA 1KS6A 3BT1U 1IKCA 3U73U 2H62D 3KFDI
chains in the Genus database with same CATH topology
5DU1A 1LJZA 3PLCA 1YWHA 1LSIA 1FRAA 2GOOB 1IK8A 2CTXA 1PLOA 1FSSB 2HLRA 5IMTD 1LXHA 1NYUA 2J8BA 1CODA 1KFHA 3BT2U 2H5FA 1L4WA 2BHIA 2UX2A 1B41B 1ONJA 1LXGA 4UY2C 1FASA 5DZ5A 1KC4A 1ERGA 2MJ4A 1CDTA 4IYEA 1BXPA 2L5SA 1KBTA 1W6BA 1QM7A 2I9BE 2LCRA 2QC1A 1S4YA 1G6MA 1ZADA 2HLQA 1MR6A 1KTZB 3NEQA 1ES7B 2GOOC 1HAJA 1CDSA 1DRSA 2H64C 1NORA 2H64B 2CDXA 3U74U 1NEAA 2CRSA 2CRTA 1CRFA 2NBTA 1TXAA 4BIKB 1RGJA 2ABXA 2H62C 5DO6A 2JVEA 5EBXA 4KSNA 4XJJA 1IJCA 3KFDE 1ERAA 4OM5A 4BDTB 1XT3A 1BTEA 2BTXA 1JE9A 1NTNA 4OM4A 1KBAA 1TXBA 1ABTA 2MHYA 2CCXA 3ERAA 2QJAC 1CREA 1F94A 1NXBA 3EBXA 4AEAA 2H7ZA 2ERAA 1CDRA 6EBXA 1NYSA 1QKDA 1CVOA 1FF4A 1COEA 1I02A 1CTXA 3LAQU 1M9ZA 1NTXA 3QB4B 2QJ9C 2UWRA 1IDIA 2L03A 2PJYC 4FAOC 1HOYA 1REWC 1HC9A 1IDGA 2PJYB 1RL5A 2QJBC 1FFJA 2OFSA 1IDLA 5IMYC 2MJYA 1V6PA 2VLWA 4FAOE 4P7UA 2N99A 1QKEA 3NH7A 2H7ZB 1UG4A 2MFAA 1HAAA 1MAHF 3NDSA 2X8BB 1CB9A 1IDHA 4DO8A 2JQPA 1FSCA 2FD6U 4LFTA 2MJ0A 1KBSA 1CDQA 1KXIA 3FEVA 4RUDA 1CXNA 1TGXA 3HH7A 1CHVS 2H8UA 3VTSA 1HC9B 2MUOA 1JGKA 1VB0A 1CCQA 1LX5B 2MUPA 4ZQYA 1KL8A 1CXOA 2K3GA 1H0JA 2LA1A 1JBDA 1IQ9A 3EVSC 4EY8B 1KU6B 4QTIU 4HQPF 1F8UB 1TFSA 1KS6A 3BT1U 1IKCA 3U73U 2H62D 3KFDI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DU1 A;  1LJZ A;  3PLC A;  1YWH A;  1LSI A;  1FRA A;  2GOO B;  1IK8 A;  2CTX A;  1PLO A;  1FSS B;  2HLR A;  5IMT D;  1LXH A;  1NYU A;  2J8B A;  1COD A;  1KFH A;  3BT2 U;  2H5F A;  1L4W A;  2BHI A;  2UX2 A;  1B41 B;  1ONJ A;  1LXG A;  4UY2 C;  1FAS A;  5DZ5 A;  1KC4 A;  1ERG A;  2MJ4 A;  1CDT A;  4IYE A;  1BXP A;  2L5S A;  1KBT A;  1W6B A;  1QM7 A;  2I9B E;  2LCR A;  2QC1 A;  1S4Y A;  1G6M A;  1ZAD A;  2HLQ A;  1MR6 A;  1KTZ B;  3NEQ A;  1ES7 B;  2GOO C;  1HAJ A;  1CDS A;  1DRS A;  2H64 C;  1NOR A;  2H64 B;  2CDX A;  3U74 U;  1NEA A;  2CRS A;  2CRT A;  1CRF A;  2NBT A;  1TXA A;  4BIK B;  1RGJ A;  2ABX A;  2H62 C;  5DO6 A;  2JVE A;  5EBX A;  4XJJ A;  1IJC A;  3KFD E;  1ERA A;  4OM5 A;  4BDT B;  1XT3 A;  1BTE A;  2BTX A;  1JE9 A;  1NTN A;  4OM4 A;  1KBA A;  1TXB A;  1ABT A;  2MHY A;  2CCX A;  3ERA A;  2QJA C;  1CRE A;  1F94 A;  1NXB A;  3EBX A;  4AEA A;  2H7Z A;  2ERA A;  1CDR A;  6EBX A;  1NYS A;  1QKD A;  1CVO A;  1FF4 A;  1COE A;  1I02 A;  1CTX A;  3LAQ U;  1M9Z A;  1NTX A;  3QB4 B;  2QJ9 C;  2UWR A;  1IDI A;  2L03 A;  2PJY C;  4FAO C;  1HOY A;  1REW C;  1HC9 A;  1IDG A;  2PJY B;  1RL5 A;  2QJB C;  1FFJ A;  2OFS A;  1IDL A;  5IMY C;  2MJY A;  1V6P A;  2VLW A;  4FAO E;  4P7U A;  2N99 A;  1QKE A;  3NH7 A;  2H7Z B;  1UG4 A;  2MFA A;  1HAA A;  1MAH F;  3NDS A;  2X8B B;  1CB9 A;  1IDH A;  4DO8 A;  2JQP A;  1FSC A;  2FD6 U;  4LFT A;  2MJ0 A;  1KBS A;  1CDQ A;  1KXI A;  3FEV A;  4RUD A;  1CXN A;  1TGX A;  3HH7 A;  1CHV S;  2H8U A;  3VTS A;  1HC9 B;  2MUO A;  1JGK A;  1VB0 A;  1CCQ A;  1LX5 B;  2MUP A;  4ZQY A;  1KL8 A;  1CXO A;  2K3G A;  1H0J A;  2LA1 A;  1JBD A;  1IQ9 A;  3EVS C;  4EY8 B;  1KU6 B;  4QTI U;  4HQP F;  1F8U B;  1TFS A;  1KS6 A;  3BT1 U;  1IKC A;  3U73 U;  2H62 D;  3KFD I; 
#chains in the Genus database with same CATH topology
 5DU1 A;  1LJZ A;  3PLC A;  1YWH A;  1LSI A;  1FRA A;  2GOO B;  1IK8 A;  2CTX A;  1PLO A;  1FSS B;  2HLR A;  5IMT D;  1LXH A;  1NYU A;  2J8B A;  1COD A;  1KFH A;  3BT2 U;  2H5F A;  1L4W A;  2BHI A;  2UX2 A;  1B41 B;  1ONJ A;  1LXG A;  4UY2 C;  1FAS A;  5DZ5 A;  1KC4 A;  1ERG A;  2MJ4 A;  1CDT A;  4IYE A;  1BXP A;  2L5S A;  1KBT A;  1W6B A;  1QM7 A;  2I9B E;  2LCR A;  2QC1 A;  1S4Y A;  1G6M A;  1ZAD A;  2HLQ A;  1MR6 A;  1KTZ B;  3NEQ A;  1ES7 B;  2GOO C;  1HAJ A;  1CDS A;  1DRS A;  2H64 C;  1NOR A;  2H64 B;  2CDX A;  3U74 U;  1NEA A;  2CRS A;  2CRT A;  1CRF A;  2NBT A;  1TXA A;  4BIK B;  1RGJ A;  2ABX A;  2H62 C;  5DO6 A;  2JVE A;  5EBX A;  4KSN A;  4XJJ A;  1IJC A;  3KFD E;  1ERA A;  4OM5 A;  4BDT B;  1XT3 A;  1BTE A;  2BTX A;  1JE9 A;  1NTN A;  4OM4 A;  1KBA A;  1TXB A;  1ABT A;  2MHY A;  2CCX A;  3ERA A;  2QJA C;  1CRE A;  1F94 A;  1NXB A;  3EBX A;  4AEA A;  2H7Z A;  2ERA A;  1CDR A;  6EBX A;  1NYS A;  1QKD A;  1CVO A;  1FF4 A;  1COE A;  1I02 A;  1CTX A;  3LAQ U;  1M9Z A;  1NTX A;  3QB4 B;  2QJ9 C;  2UWR A;  1IDI A;  2L03 A;  2PJY C;  4FAO C;  1HOY A;  1REW C;  1HC9 A;  1IDG A;  2PJY B;  1RL5 A;  2QJB C;  1FFJ A;  2OFS A;  1IDL A;  5IMY C;  2MJY A;  1V6P A;  2VLW A;  4FAO E;  4P7U A;  2N99 A;  1QKE A;  3NH7 A;  2H7Z B;  1UG4 A;  2MFA A;  1HAA A;  1MAH F;  3NDS A;  2X8B B;  1CB9 A;  1IDH A;  4DO8 A;  2JQP A;  1FSC A;  2FD6 U;  4LFT A;  2MJ0 A;  1KBS A;  1CDQ A;  1KXI A;  3FEV A;  4RUD A;  1CXN A;  1TGX A;  3HH7 A;  1CHV S;  2H8U A;  3VTS A;  1HC9 B;  2MUO A;  1JGK A;  1VB0 A;  1CCQ A;  1LX5 B;  2MUP A;  4ZQY A;  1KL8 A;  1CXO A;  2K3G A;  1H0J A;  2LA1 A;  1JBD A;  1IQ9 A;  3EVS C;  4EY8 B;  1KU6 B;  4QTI U;  4HQP F;  1F8U B;  1TFS A;  1KS6 A;  3BT1 U;  1IKC A;  3U73 U;  2H62 D;  3KFD I; 
#chains in the Genus database with same CATH homology
 5DU1 A;  1LJZ A;  3PLC A;  1YWH A;  1LSI A;  1FRA A;  2GOO B;  1IK8 A;  2CTX A;  1PLO A;  1FSS B;  2HLR A;  5IMT D;  1LXH A;  1NYU A;  2J8B A;  1COD A;  1KFH A;  3BT2 U;  2H5F A;  1L4W A;  2BHI A;  2UX2 A;  1B41 B;  1ONJ A;  1LXG A;  4UY2 C;  1FAS A;  5DZ5 A;  1KC4 A;  1ERG A;  2MJ4 A;  1CDT A;  4IYE A;  1BXP A;  2L5S A;  1KBT A;  1W6B A;  1QM7 A;  2I9B E;  2LCR A;  2QC1 A;  1S4Y A;  1G6M A;  1ZAD A;  2HLQ A;  1MR6 A;  1KTZ B;  3NEQ A;  1ES7 B;  2GOO C;  1HAJ A;  1CDS A;  1DRS A;  2H64 C;  1NOR A;  2H64 B;  2CDX A;  3U74 U;  1NEA A;  2CRS A;  2CRT A;  1CRF A;  2NBT A;  1TXA A;  4BIK B;  1RGJ A;  2ABX A;  2H62 C;  5DO6 A;  2JVE A;  5EBX A;  4KSN A;  4XJJ A;  1IJC A;  3KFD E;  1ERA A;  4OM5 A;  4BDT B;  1XT3 A;  1BTE A;  2BTX A;  1JE9 A;  1NTN A;  4OM4 A;  1KBA A;  1TXB A;  1ABT A;  2MHY A;  2CCX A;  3ERA A;  2QJA C;  1CRE A;  1F94 A;  1NXB A;  3EBX A;  4AEA A;  2H7Z A;  2ERA A;  1CDR A;  6EBX A;  1NYS A;  1QKD A;  1CVO A;  1FF4 A;  1COE A;  1I02 A;  1CTX A;  3LAQ U;  1M9Z A;  1NTX A;  3QB4 B;  2QJ9 C;  2UWR A;  1IDI A;  2L03 A;  2PJY C;  4FAO C;  1HOY A;  1REW C;  1HC9 A;  1IDG A;  2PJY B;  1RL5 A;  2QJB C;  1FFJ A;  2OFS A;  1IDL A;  5IMY C;  2MJY A;  1V6P A;  2VLW A;  4FAO E;  4P7U A;  2N99 A;  1QKE A;  3NH7 A;  2H7Z B;  1UG4 A;  2MFA A;  1HAA A;  1MAH F;  3NDS A;  2X8B B;  1CB9 A;  1IDH A;  4DO8 A;  2JQP A;  1FSC A;  2FD6 U;  4LFT A;  2MJ0 A;  1KBS A;  1CDQ A;  1KXI A;  3FEV A;  4RUD A;  1CXN A;  1TGX A;  3HH7 A;  1CHV S;  2H8U A;  3VTS A;  1HC9 B;  2MUO A;  1JGK A;  1VB0 A;  1CCQ A;  1LX5 B;  2MUP A;  4ZQY A;  1KL8 A;  1CXO A;  2K3G A;  1H0J A;  2LA1 A;  1JBD A;  1IQ9 A;  3EVS C;  4EY8 B;  1KU6 B;  4QTI U;  4HQP F;  1F8U B;  1TFS A;  1KS6 A;  3BT1 U;  1IKC A;  3U73 U;  2H62 D;  3KFD I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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