1FRAA

Tertiary structure of erabutoxin b in aqueous solution elucidated by two-dimensional nuclear magnetic resonance
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
62
structure length
62
Chain Sequence
RICFNHQSSQPQTTKTCSPGESSCYHKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords ERABUTOXIN B
publication title Tertiary structure of erabutoxin b in aqueous solution as elucidated by two-dimensional nuclear magnetic resonance.
pubmed doi rcsb
source organism Laticauda semifasciata
total genus 8
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 1994-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1fraA00
1L4WA 1UG4A 2QC1A 1NTXA 2OFSA 1CDRA 1F8UB 1NTNA 2FD6U 1I02A 3QB4B 2ABXA 2MHYA 2PJYB 2UWRA 2K3GA 1QKDA 4EY8B 4BIKB 1FRAA 1CTXA 2QJBC 1LSIA 1NEAA 1JE9A 1CDTA 2BHIA 2ERAA 5DO6A 2J8BA 1NYUA 2L03A 1CXOA 3BT2U 1KBSA 2NBTA 2JQPA 1ES7B 1NYSA 2MFAA 3VTSA 3KFDE 1KBAA 1IQ9A 3BT1U 1REWC 2LA1A 1CXNA 3NEQA 3KFDI 4FAOE 1IDHA 1IDIA 1CVOA 2GOOB 3PLCA 1TFSA 3EBXA 1IJCA 2H64B 1TXBA 4IYEA 4OM4A 1KFHA 2CRTA 1IKCA 1COEA 1TXAA 6EBXA 2H8UA 1CCQA 1LJZA 4DO8A 1RGJA 2H7ZA 1XT3A 2CTXA 2CRSA 1JBDA 1W6BA 1FSCA 5EBXA 2LCRA 1V6PA 1QKEA 2L5SA 1S4YA 1BTEA 4P7UA 3NDSA 1HOYA 1HC9B 1FF4A 3ERAA 2MUPA 2HLQA 2QJ9C 2VLWA 2I9BE 2UX2A 4QTIU 1H0JA 1HAAA 1KC4A 1CHVS 2CDXA 1FSSB 3FEVA 1MR6A 1M9ZA 2QJAC 1CREA 5IMTD 1DRSA 1ZADA 1YWHA 1KXIA 1HAJA 1ABTA 1ERGA 1ERAA 4LFTA 3LAQU 1CDQA 1KTZB 1KU6B 2JVEA 1ONJA 2X8BB 4HQPF 1MAHF 2PJYC 3NH7A 2HLRA 2BTXA 1LXHA 5DZ5A 2MJ0A 3U73U 2MJ4A 4BDTB 2H5FA 1G6MA 1B41B 1BXPA 1F94A 1FFJA 3HH7A 1PLOA 4AEAA 1IDLA 1CRFA 1VB0A 2MJYA 3U74U 2H62C 4OM5A 4XJJA 2MUOA 2H62D 4RUDA 1LX5B 1CDSA 1KBTA 1FASA 5DU1A 1TGXA 1KL8A 1IK8A 1LXGA 1RL5A 2H7ZB 5IMYC 4FAOC 1CODA 2GOOC 2N99A 1NORA 4UY2C 1HC9A 2CCXA 1QM7A 2H64C 1JGKA 3EVSC 4ZQYA 1KS6A 1NXBA 1CB9A 1IDGA
chains in the Genus database with same CATH superfamily
1L4WA 1UG4A 2QC1A 1NTXA 2OFSA 1CDRA 1F8UB 1NTNA 2FD6U 1I02A 3QB4B 2ABXA 2MHYA 2PJYB 2UWRA 2K3GA 1QKDA 4EY8B 4BIKB 1FRAA 1CTXA 2QJBC 1LSIA 1NEAA 1JE9A 1CDTA 2BHIA 2ERAA 5DO6A 2J8BA 1NYUA 2L03A 1CXOA 3BT2U 1KBSA 2NBTA 2JQPA 1ES7B 1NYSA 2MFAA 3VTSA 3KFDE 1KBAA 1IQ9A 3BT1U 1REWC 2LA1A 1CXNA 3NEQA 3KFDI 4FAOE 1IDHA 1IDIA 1CVOA 2GOOB 4KSNA 3PLCA 1TFSA 3EBXA 1IJCA 2H64B 1TXBA 4IYEA 4OM4A 1KFHA 2CRTA 1IKCA 1COEA 1TXAA 6EBXA 2H8UA 1CCQA 1LJZA 4DO8A 1RGJA 2H7ZA 1XT3A 2CTXA 2CRSA 1JBDA 1W6BA 1FSCA 5EBXA 2LCRA 1V6PA 1QKEA 2L5SA 1S4YA 1BTEA 4P7UA 3NDSA 1HOYA 1HC9B 1FF4A 3ERAA 2MUPA 2HLQA 2QJ9C 2VLWA 2I9BE 2UX2A 4QTIU 1H0JA 1HAAA 1KC4A 1CHVS 2CDXA 1FSSB 3FEVA 1MR6A 1M9ZA 2QJAC 1CREA 5IMTD 1DRSA 1ZADA 1YWHA 1KXIA 1HAJA 1ABTA 1ERGA 1ERAA 4LFTA 3LAQU 1CDQA 1KTZB 1KU6B 2JVEA 1ONJA 2X8BB 4HQPF 1MAHF 2PJYC 3NH7A 2HLRA 2BTXA 1LXHA 5DZ5A 2MJ0A 3U73U 2MJ4A 4BDTB 2H5FA 1G6MA 1B41B 1BXPA 1F94A 1FFJA 3HH7A 1PLOA 4AEAA 1IDLA 1CRFA 1VB0A 2MJYA 3U74U 2H62C 4OM5A 4XJJA 2MUOA 2H62D 4RUDA 1LX5B 1CDSA 1KBTA 1FASA 5DU1A 1TGXA 1KL8A 1IK8A 1LXGA 1RL5A 2H7ZB 5IMYC 4FAOC 1CODA 2GOOC 2N99A 1NORA 4UY2C 1HC9A 2CCXA 1QM7A 2H64C 1JGKA 3EVSC 4ZQYA 1KS6A 1NXBA 1CB9A 1IDGA
chains in the Genus database with same CATH topology
1L4WA 1UG4A 2QC1A 1NTXA 2OFSA 1CDRA 1F8UB 1NTNA 2FD6U 1I02A 3QB4B 2ABXA 2MHYA 2PJYB 2UWRA 2K3GA 1QKDA 4EY8B 4BIKB 1FRAA 1CTXA 2QJBC 1LSIA 1NEAA 1JE9A 1CDTA 2BHIA 2ERAA 5DO6A 2J8BA 1NYUA 2L03A 1CXOA 3BT2U 1KBSA 2NBTA 2JQPA 1ES7B 1NYSA 2MFAA 3VTSA 3KFDE 1KBAA 1IQ9A 3BT1U 1REWC 2LA1A 1CXNA 3NEQA 3KFDI 4FAOE 1IDHA 1IDIA 1CVOA 2GOOB 4KSNA 3PLCA 1TFSA 3EBXA 1IJCA 2H64B 1TXBA 4IYEA 4OM4A 1KFHA 2CRTA 1IKCA 1COEA 1TXAA 6EBXA 2H8UA 1CCQA 1LJZA 4DO8A 1RGJA 2H7ZA 1XT3A 2CTXA 2CRSA 1JBDA 1W6BA 1FSCA 5EBXA 2LCRA 1V6PA 1QKEA 2L5SA 1S4YA 1BTEA 4P7UA 3NDSA 1HOYA 1HC9B 1FF4A 3ERAA 2MUPA 2HLQA 2QJ9C 2VLWA 2I9BE 2UX2A 4QTIU 1H0JA 1HAAA 1KC4A 1CHVS 2CDXA 1FSSB 3FEVA 1MR6A 1M9ZA 2QJAC 1CREA 5IMTD 1DRSA 1ZADA 1YWHA 1KXIA 1HAJA 1ABTA 1ERGA 1ERAA 4LFTA 3LAQU 1CDQA 1KTZB 1KU6B 2JVEA 1ONJA 2X8BB 4HQPF 1MAHF 2PJYC 3NH7A 2HLRA 2BTXA 1LXHA 5DZ5A 2MJ0A 3U73U 2MJ4A 4BDTB 2H5FA 1G6MA 1B41B 1BXPA 1F94A 1FFJA 3HH7A 1PLOA 4AEAA 1IDLA 1CRFA 1VB0A 2MJYA 3U74U 2H62C 4OM5A 4XJJA 2MUOA 2H62D 4RUDA 1LX5B 1CDSA 1KBTA 1FASA 5DU1A 1TGXA 1KL8A 1IK8A 1LXGA 1RL5A 2H7ZB 5IMYC 4FAOC 1CODA 2GOOC 2N99A 1NORA 4UY2C 1HC9A 2CCXA 1QM7A 2H64C 1JGKA 3EVSC 4ZQYA 1KS6A 1NXBA 1CB9A 1IDGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1L4W A;  1UG4 A;  2QC1 A;  1NTX A;  2OFS A;  1CDR A;  1F8U B;  1NTN A;  2FD6 U;  1I02 A;  3QB4 B;  2ABX A;  2MHY A;  2PJY B;  2UWR A;  2K3G A;  1QKD A;  4EY8 B;  4BIK B;  1FRA A;  1CTX A;  2QJB C;  1LSI A;  1NEA A;  1JE9 A;  1CDT A;  2BHI A;  2ERA A;  5DO6 A;  2J8B A;  1NYU A;  2L03 A;  1CXO A;  3BT2 U;  1KBS A;  2NBT A;  2JQP A;  1ES7 B;  1NYS A;  2MFA A;  3VTS A;  3KFD E;  1KBA A;  1IQ9 A;  3BT1 U;  1REW C;  2LA1 A;  1CXN A;  3NEQ A;  3KFD I;  4FAO E;  1IDH A;  1IDI A;  1CVO A;  2GOO B;  3PLC A;  1TFS A;  3EBX A;  1IJC A;  2H64 B;  1TXB A;  4IYE A;  4OM4 A;  1KFH A;  2CRT A;  1IKC A;  1COE A;  1TXA A;  6EBX A;  2H8U A;  1CCQ A;  1LJZ A;  4DO8 A;  1RGJ A;  2H7Z A;  1XT3 A;  2CTX A;  2CRS A;  1JBD A;  1W6B A;  1FSC A;  5EBX A;  2LCR A;  1V6P A;  1QKE A;  2L5S A;  1S4Y A;  1BTE A;  4P7U A;  3NDS A;  1HOY A;  1HC9 B;  1FF4 A;  3ERA A;  2MUP A;  2HLQ A;  2QJ9 C;  2VLW A;  2I9B E;  2UX2 A;  4QTI U;  1H0J A;  1HAA A;  1KC4 A;  1CHV S;  2CDX A;  1FSS B;  3FEV A;  1MR6 A;  1M9Z A;  2QJA C;  1CRE A;  5IMT D;  1DRS A;  1ZAD A;  1YWH A;  1KXI A;  1HAJ A;  1ABT A;  1ERG A;  1ERA A;  4LFT A;  3LAQ U;  1CDQ A;  1KTZ B;  1KU6 B;  2JVE A;  1ONJ A;  2X8B B;  4HQP F;  1MAH F;  2PJY C;  3NH7 A;  2HLR A;  2BTX A;  1LXH A;  5DZ5 A;  2MJ0 A;  3U73 U;  2MJ4 A;  4BDT B;  2H5F A;  1G6M A;  1B41 B;  1BXP A;  1F94 A;  1FFJ A;  3HH7 A;  1PLO A;  4AEA A;  1IDL A;  1CRF A;  1VB0 A;  2MJY A;  3U74 U;  2H62 C;  4OM5 A;  4XJJ A;  2MUO A;  2H62 D;  4RUD A;  1LX5 B;  1CDS A;  1KBT A;  1FAS A;  5DU1 A;  1TGX A;  1KL8 A;  1IK8 A;  1LXG A;  1RL5 A;  2H7Z B;  5IMY C;  4FAO C;  1COD A;  2GOO C;  2N99 A;  1NOR A;  4UY2 C;  1HC9 A;  2CCX A;  1QM7 A;  2H64 C;  1JGK A;  3EVS C;  4ZQY A;  1KS6 A;  1NXB A;  1CB9 A;  1IDG A; 
#chains in the Genus database with same CATH topology
 1L4W A;  1UG4 A;  2QC1 A;  1NTX A;  2OFS A;  1CDR A;  1F8U B;  1NTN A;  2FD6 U;  1I02 A;  3QB4 B;  2ABX A;  2MHY A;  2PJY B;  2UWR A;  2K3G A;  1QKD A;  4EY8 B;  4BIK B;  1FRA A;  1CTX A;  2QJB C;  1LSI A;  1NEA A;  1JE9 A;  1CDT A;  2BHI A;  2ERA A;  5DO6 A;  2J8B A;  1NYU A;  2L03 A;  1CXO A;  3BT2 U;  1KBS A;  2NBT A;  2JQP A;  1ES7 B;  1NYS A;  2MFA A;  3VTS A;  3KFD E;  1KBA A;  1IQ9 A;  3BT1 U;  1REW C;  2LA1 A;  1CXN A;  3NEQ A;  3KFD I;  4FAO E;  1IDH A;  1IDI A;  1CVO A;  2GOO B;  4KSN A;  3PLC A;  1TFS A;  3EBX A;  1IJC A;  2H64 B;  1TXB A;  4IYE A;  4OM4 A;  1KFH A;  2CRT A;  1IKC A;  1COE A;  1TXA A;  6EBX A;  2H8U A;  1CCQ A;  1LJZ A;  4DO8 A;  1RGJ A;  2H7Z A;  1XT3 A;  2CTX A;  2CRS A;  1JBD A;  1W6B A;  1FSC A;  5EBX A;  2LCR A;  1V6P A;  1QKE A;  2L5S A;  1S4Y A;  1BTE A;  4P7U A;  3NDS A;  1HOY A;  1HC9 B;  1FF4 A;  3ERA A;  2MUP A;  2HLQ A;  2QJ9 C;  2VLW A;  2I9B E;  2UX2 A;  4QTI U;  1H0J A;  1HAA A;  1KC4 A;  1CHV S;  2CDX A;  1FSS B;  3FEV A;  1MR6 A;  1M9Z A;  2QJA C;  1CRE A;  5IMT D;  1DRS A;  1ZAD A;  1YWH A;  1KXI A;  1HAJ A;  1ABT A;  1ERG A;  1ERA A;  4LFT A;  3LAQ U;  1CDQ A;  1KTZ B;  1KU6 B;  2JVE A;  1ONJ A;  2X8B B;  4HQP F;  1MAH F;  2PJY C;  3NH7 A;  2HLR A;  2BTX A;  1LXH A;  5DZ5 A;  2MJ0 A;  3U73 U;  2MJ4 A;  4BDT B;  2H5F A;  1G6M A;  1B41 B;  1BXP A;  1F94 A;  1FFJ A;  3HH7 A;  1PLO A;  4AEA A;  1IDL A;  1CRF A;  1VB0 A;  2MJY A;  3U74 U;  2H62 C;  4OM5 A;  4XJJ A;  2MUO A;  2H62 D;  4RUD A;  1LX5 B;  1CDS A;  1KBT A;  1FAS A;  5DU1 A;  1TGX A;  1KL8 A;  1IK8 A;  1LXG A;  1RL5 A;  2H7Z B;  5IMY C;  4FAO C;  1COD A;  2GOO C;  2N99 A;  1NOR A;  4UY2 C;  1HC9 A;  2CCX A;  1QM7 A;  2H64 C;  1JGK A;  3EVS C;  4ZQY A;  1KS6 A;  1NXB A;  1CB9 A;  1IDG A; 
#chains in the Genus database with same CATH homology
 1L4W A;  1UG4 A;  2QC1 A;  1NTX A;  2OFS A;  1CDR A;  1F8U B;  1NTN A;  2FD6 U;  1I02 A;  3QB4 B;  2ABX A;  2MHY A;  2PJY B;  2UWR A;  2K3G A;  1QKD A;  4EY8 B;  4BIK B;  1FRA A;  1CTX A;  2QJB C;  1LSI A;  1NEA A;  1JE9 A;  1CDT A;  2BHI A;  2ERA A;  5DO6 A;  2J8B A;  1NYU A;  2L03 A;  1CXO A;  3BT2 U;  1KBS A;  2NBT A;  2JQP A;  1ES7 B;  1NYS A;  2MFA A;  3VTS A;  3KFD E;  1KBA A;  1IQ9 A;  3BT1 U;  1REW C;  2LA1 A;  1CXN A;  3NEQ A;  3KFD I;  4FAO E;  1IDH A;  1IDI A;  1CVO A;  2GOO B;  4KSN A;  3PLC A;  1TFS A;  3EBX A;  1IJC A;  2H64 B;  1TXB A;  4IYE A;  4OM4 A;  1KFH A;  2CRT A;  1IKC A;  1COE A;  1TXA A;  6EBX A;  2H8U A;  1CCQ A;  1LJZ A;  4DO8 A;  1RGJ A;  2H7Z A;  1XT3 A;  2CTX A;  2CRS A;  1JBD A;  1W6B A;  1FSC A;  5EBX A;  2LCR A;  1V6P A;  1QKE A;  2L5S A;  1S4Y A;  1BTE A;  4P7U A;  3NDS A;  1HOY A;  1HC9 B;  1FF4 A;  3ERA A;  2MUP A;  2HLQ A;  2QJ9 C;  2VLW A;  2I9B E;  2UX2 A;  4QTI U;  1H0J A;  1HAA A;  1KC4 A;  1CHV S;  2CDX A;  1FSS B;  3FEV A;  1MR6 A;  1M9Z A;  2QJA C;  1CRE A;  5IMT D;  1DRS A;  1ZAD A;  1YWH A;  1KXI A;  1HAJ A;  1ABT A;  1ERG A;  1ERA A;  4LFT A;  3LAQ U;  1CDQ A;  1KTZ B;  1KU6 B;  2JVE A;  1ONJ A;  2X8B B;  4HQP F;  1MAH F;  2PJY C;  3NH7 A;  2HLR A;  2BTX A;  1LXH A;  5DZ5 A;  2MJ0 A;  3U73 U;  2MJ4 A;  4BDT B;  2H5F A;  1G6M A;  1B41 B;  1BXP A;  1F94 A;  1FFJ A;  3HH7 A;  1PLO A;  4AEA A;  1IDL A;  1CRF A;  1VB0 A;  2MJY A;  3U74 U;  2H62 C;  4OM5 A;  4XJJ A;  2MUO A;  2H62 D;  4RUD A;  1LX5 B;  1CDS A;  1KBT A;  1FAS A;  5DU1 A;  1TGX A;  1KL8 A;  1IK8 A;  1LXG A;  1RL5 A;  2H7Z B;  5IMY C;  4FAO C;  1COD A;  2GOO C;  2N99 A;  1NOR A;  4UY2 C;  1HC9 A;  2CCX A;  1QM7 A;  2H64 C;  1JGK A;  3EVS C;  4ZQY A;  1KS6 A;  1NXB A;  1CB9 A;  1IDG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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