1FRAA

Tertiary structure of erabutoxin b in aqueous solution elucidated by two-dimensional nuclear magnetic resonance
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
62
structure length
62
Chain Sequence
RICFNHQSSQPQTTKTCSPGESSCYHKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ERABUTOXIN B
publication title Tertiary structure of erabutoxin b in aqueous solution as elucidated by two-dimensional nuclear magnetic resonance.
pubmed doi rcsb
source organism Laticauda semifasciata
molecule tags Toxin
total genus 8
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 1994-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1fraA00
1LXGA 4BIKB 1KXIA 3FEVA 1I02A 2JVEA 2QJAC 1FF4A 1NYSA 1TXBA 1CHVS 1QKEA 1ONJA 2H64B 2LA1A 1HAJA 1F8UB 1NTXA 3VTSA 2N99A 1HAAA 1IKCA 2H64C 2BHIA 3U74U 3U73U 1KTZB 1CXOA 1YWHA 4OM5A 1NEAA 3BT2U 1FASA 1BXPA 4FAOE 1IDLA 1JE9A 1BTEA 3EBXA 2QJBC 1KL8A 6EBXA 2K3GA 4ZQYA 2UX2A 2CRTA 2LCRA 2FD6U 1ABTA 5IMYC 1H0JA 1CDRA 3NDSA 1CRFA 1DRSA 2VLWA 1KS6A 2MUOA 1CODA 4AEAA 4QTIU 1REWC 2H7ZB 1KU6B 1IQ9A 1TFSA 1FSSB 1NXBA 2MJ4A 1NORA 1ERGA 1TGXA 4OM4A 1IDHA 3KFDE 2CDXA 2L5SA 4P7UA 1KC4A 2MFAA 2CTXA 1JGKA 1F94A 5DU1A 1CCQA 1HOYA 1ERAA 1HC9A 1ZADA 2L03A 2PJYC 1HC9B 2H62C 4IYEA 3QB4B 3NEQA 1KBTA 1CB9A 3HH7A 4XJJA 1CDTA 1KFHA 4DO8A 4LFTA 1KBSA 3EVSC 4EY8B 1CDQA 1NYUA 4HQPF 4UY2C 1LXHA 1S4YA 1FFJA 2QC1A 1NTNA 2H7ZA 1B41B 4FAOC 1IK8A 2MUPA 2J8BA 3NH7A 1RL5A 1M9ZA 1MR6A 5EBXA 2MJ0A 1CXNA 1QM7A 2GOOB 1IDGA 1KBAA 2H5FA 2PJYB 3LAQU 2H62D 2HLRA 1CDSA 3ERAA 3PLCA 2GOOC 1L4WA 2JQPA 5DZ5A 1LJZA 1IJCA 3BT1U 1CVOA 2CRSA 1TXAA 2MHYA 1RGJA 3KFDI 1G6MA 1LX5B 2NBTA 2H8UA 1LSIA 5IMTD 2BTXA 1XT3A 1CREA 1IDIA 1FSCA 2QJ9C 2UWRA 4RUDA 2ERAA 2X8BB 1QKDA 2CCXA 1V6PA 2I9BE 1MAHF 4BDTB 2OFSA 1PLOA 1FRAA 1UG4A 1CTXA 1JBDA 2MJYA 1ES7B 2ABXA 2HLQA 1VB0A 5DO6A 1W6BA 1COEA
chains in the Genus database with same CATH superfamily
1LXGA 4BIKB 1KXIA 3FEVA 1I02A 2JVEA 2QJAC 1FF4A 1NYSA 1TXBA 1CHVS 1QKEA 1ONJA 2H64B 2LA1A 1HAJA 1F8UB 1NTXA 3VTSA 2N99A 1HAAA 1IKCA 2H64C 2BHIA 3U74U 3U73U 1KTZB 1CXOA 1YWHA 4OM5A 1NEAA 3BT2U 1FASA 1BXPA 4FAOE 1IDLA 1JE9A 1BTEA 3EBXA 2QJBC 1KL8A 6EBXA 2K3GA 4ZQYA 2UX2A 2CRTA 2LCRA 2FD6U 1ABTA 5IMYC 1H0JA 1CDRA 3NDSA 1CRFA 1DRSA 2VLWA 1KS6A 2MUOA 1CODA 4AEAA 4QTIU 1REWC 2H7ZB 1KU6B 1IQ9A 1TFSA 1FSSB 1NXBA 2MJ4A 1NORA 1ERGA 1TGXA 4OM4A 1IDHA 3KFDE 2CDXA 2L5SA 4P7UA 1KC4A 2MFAA 2CTXA 1JGKA 1F94A 5DU1A 1CCQA 1HOYA 1ERAA 1HC9A 1ZADA 2L03A 2PJYC 1HC9B 2H62C 4IYEA 3QB4B 3NEQA 1KBTA 1CB9A 3HH7A 4XJJA 1CDTA 1KFHA 4DO8A 4LFTA 1KBSA 3EVSC 4EY8B 1CDQA 1NYUA 4HQPF 4UY2C 1LXHA 1S4YA 1FFJA 2QC1A 1NTNA 2H7ZA 1B41B 4FAOC 1IK8A 2MUPA 2J8BA 3NH7A 1RL5A 1M9ZA 1MR6A 5EBXA 2MJ0A 1CXNA 1QM7A 2GOOB 1IDGA 1KBAA 2H5FA 2PJYB 3LAQU 2H62D 2HLRA 1CDSA 3ERAA 3PLCA 2GOOC 1L4WA 2JQPA 4KSNA 5DZ5A 1LJZA 1IJCA 3BT1U 1CVOA 2CRSA 1TXAA 2MHYA 1RGJA 3KFDI 1G6MA 1LX5B 2NBTA 2H8UA 1LSIA 5IMTD 2BTXA 1XT3A 1CREA 1IDIA 1FSCA 2QJ9C 2UWRA 4RUDA 2ERAA 2X8BB 1QKDA 2CCXA 1V6PA 2I9BE 1MAHF 4BDTB 2OFSA 1PLOA 1FRAA 1UG4A 1CTXA 1JBDA 2MJYA 1ES7B 2ABXA 2HLQA 1VB0A 5DO6A 1W6BA 1COEA
chains in the Genus database with same CATH topology
1LXGA 4BIKB 1KXIA 3FEVA 1I02A 2JVEA 2QJAC 1FF4A 1NYSA 1TXBA 1CHVS 1QKEA 1ONJA 2H64B 2LA1A 1HAJA 1F8UB 1NTXA 3VTSA 2N99A 1HAAA 1IKCA 2H64C 2BHIA 3U74U 3U73U 1KTZB 1CXOA 1YWHA 4OM5A 1NEAA 3BT2U 1FASA 1BXPA 4FAOE 1IDLA 1JE9A 1BTEA 3EBXA 2QJBC 1KL8A 6EBXA 2K3GA 4ZQYA 2UX2A 2CRTA 2LCRA 2FD6U 1ABTA 5IMYC 1H0JA 1CDRA 3NDSA 1CRFA 1DRSA 2VLWA 1KS6A 2MUOA 1CODA 4AEAA 4QTIU 1REWC 2H7ZB 1KU6B 1IQ9A 1TFSA 1FSSB 1NXBA 2MJ4A 1NORA 1ERGA 1TGXA 4OM4A 1IDHA 3KFDE 2CDXA 2L5SA 4P7UA 1KC4A 2MFAA 2CTXA 1JGKA 1F94A 5DU1A 1CCQA 1HOYA 1ERAA 1HC9A 1ZADA 2L03A 2PJYC 1HC9B 2H62C 4IYEA 3QB4B 3NEQA 1KBTA 1CB9A 3HH7A 4XJJA 1CDTA 1KFHA 4DO8A 4LFTA 1KBSA 3EVSC 4EY8B 1CDQA 1NYUA 4HQPF 4UY2C 1LXHA 1S4YA 1FFJA 2QC1A 1NTNA 2H7ZA 1B41B 4FAOC 1IK8A 2MUPA 2J8BA 3NH7A 1RL5A 1M9ZA 1MR6A 5EBXA 2MJ0A 1CXNA 1QM7A 2GOOB 1IDGA 1KBAA 2H5FA 2PJYB 3LAQU 2H62D 2HLRA 1CDSA 3ERAA 3PLCA 2GOOC 1L4WA 2JQPA 4KSNA 5DZ5A 1LJZA 1IJCA 3BT1U 1CVOA 2CRSA 1TXAA 2MHYA 1RGJA 3KFDI 1G6MA 1LX5B 2NBTA 2H8UA 1LSIA 5IMTD 2BTXA 1XT3A 1CREA 1IDIA 1FSCA 2QJ9C 2UWRA 4RUDA 2ERAA 2X8BB 1QKDA 2CCXA 1V6PA 2I9BE 1MAHF 4BDTB 2OFSA 1PLOA 1FRAA 1UG4A 1CTXA 1JBDA 2MJYA 1ES7B 2ABXA 2HLQA 1VB0A 5DO6A 1W6BA 1COEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LXG A;  4BIK B;  1KXI A;  3FEV A;  1I02 A;  2JVE A;  2QJA C;  1FF4 A;  1NYS A;  1TXB A;  1CHV S;  1QKE A;  1ONJ A;  2H64 B;  2LA1 A;  1HAJ A;  1F8U B;  1NTX A;  3VTS A;  2N99 A;  1HAA A;  1IKC A;  2H64 C;  2BHI A;  3U74 U;  3U73 U;  1KTZ B;  1CXO A;  1YWH A;  4OM5 A;  1NEA A;  3BT2 U;  1FAS A;  1BXP A;  4FAO E;  1IDL A;  1JE9 A;  1BTE A;  3EBX A;  2QJB C;  1KL8 A;  6EBX A;  2K3G A;  4ZQY A;  2UX2 A;  2CRT A;  2LCR A;  2FD6 U;  1ABT A;  5IMY C;  1H0J A;  1CDR A;  3NDS A;  1CRF A;  1DRS A;  2VLW A;  1KS6 A;  2MUO A;  1COD A;  4AEA A;  4QTI U;  1REW C;  2H7Z B;  1KU6 B;  1IQ9 A;  1TFS A;  1FSS B;  1NXB A;  2MJ4 A;  1NOR A;  1ERG A;  1TGX A;  4OM4 A;  1IDH A;  3KFD E;  2CDX A;  2L5S A;  4P7U A;  1KC4 A;  2MFA A;  2CTX A;  1JGK A;  1F94 A;  5DU1 A;  1CCQ A;  1HOY A;  1ERA A;  1HC9 A;  1ZAD A;  2L03 A;  2PJY C;  1HC9 B;  2H62 C;  4IYE A;  3QB4 B;  3NEQ A;  1KBT A;  1CB9 A;  3HH7 A;  4XJJ A;  1CDT A;  1KFH A;  4DO8 A;  4LFT A;  1KBS A;  3EVS C;  4EY8 B;  1CDQ A;  1NYU A;  4HQP F;  4UY2 C;  1LXH A;  1S4Y A;  1FFJ A;  2QC1 A;  1NTN A;  2H7Z A;  1B41 B;  4FAO C;  1IK8 A;  2MUP A;  2J8B A;  3NH7 A;  1RL5 A;  1M9Z A;  1MR6 A;  5EBX A;  2MJ0 A;  1CXN A;  1QM7 A;  2GOO B;  1IDG A;  1KBA A;  2H5F A;  2PJY B;  3LAQ U;  2H62 D;  2HLR A;  1CDS A;  3ERA A;  3PLC A;  2GOO C;  1L4W A;  2JQP A;  5DZ5 A;  1LJZ A;  1IJC A;  3BT1 U;  1CVO A;  2CRS A;  1TXA A;  2MHY A;  1RGJ A;  3KFD I;  1G6M A;  1LX5 B;  2NBT A;  2H8U A;  1LSI A;  5IMT D;  2BTX A;  1XT3 A;  1CRE A;  1IDI A;  1FSC A;  2QJ9 C;  2UWR A;  4RUD A;  2ERA A;  2X8B B;  1QKD A;  2CCX A;  1V6P A;  2I9B E;  1MAH F;  4BDT B;  2OFS A;  1PLO A;  1FRA A;  1UG4 A;  1CTX A;  1JBD A;  2MJY A;  1ES7 B;  2ABX A;  2HLQ A;  1VB0 A;  5DO6 A;  1W6B A;  1COE A; 
#chains in the Genus database with same CATH topology
 1LXG A;  4BIK B;  1KXI A;  3FEV A;  1I02 A;  2JVE A;  2QJA C;  1FF4 A;  1NYS A;  1TXB A;  1CHV S;  1QKE A;  1ONJ A;  2H64 B;  2LA1 A;  1HAJ A;  1F8U B;  1NTX A;  3VTS A;  2N99 A;  1HAA A;  1IKC A;  2H64 C;  2BHI A;  3U74 U;  3U73 U;  1KTZ B;  1CXO A;  1YWH A;  4OM5 A;  1NEA A;  3BT2 U;  1FAS A;  1BXP A;  4FAO E;  1IDL A;  1JE9 A;  1BTE A;  3EBX A;  2QJB C;  1KL8 A;  6EBX A;  2K3G A;  4ZQY A;  2UX2 A;  2CRT A;  2LCR A;  2FD6 U;  1ABT A;  5IMY C;  1H0J A;  1CDR A;  3NDS A;  1CRF A;  1DRS A;  2VLW A;  1KS6 A;  2MUO A;  1COD A;  4AEA A;  4QTI U;  1REW C;  2H7Z B;  1KU6 B;  1IQ9 A;  1TFS A;  1FSS B;  1NXB A;  2MJ4 A;  1NOR A;  1ERG A;  1TGX A;  4OM4 A;  1IDH A;  3KFD E;  2CDX A;  2L5S A;  4P7U A;  1KC4 A;  2MFA A;  2CTX A;  1JGK A;  1F94 A;  5DU1 A;  1CCQ A;  1HOY A;  1ERA A;  1HC9 A;  1ZAD A;  2L03 A;  2PJY C;  1HC9 B;  2H62 C;  4IYE A;  3QB4 B;  3NEQ A;  1KBT A;  1CB9 A;  3HH7 A;  4XJJ A;  1CDT A;  1KFH A;  4DO8 A;  4LFT A;  1KBS A;  3EVS C;  4EY8 B;  1CDQ A;  1NYU A;  4HQP F;  4UY2 C;  1LXH A;  1S4Y A;  1FFJ A;  2QC1 A;  1NTN A;  2H7Z A;  1B41 B;  4FAO C;  1IK8 A;  2MUP A;  2J8B A;  3NH7 A;  1RL5 A;  1M9Z A;  1MR6 A;  5EBX A;  2MJ0 A;  1CXN A;  1QM7 A;  2GOO B;  1IDG A;  1KBA A;  2H5F A;  2PJY B;  3LAQ U;  2H62 D;  2HLR A;  1CDS A;  3ERA A;  3PLC A;  2GOO C;  1L4W A;  2JQP A;  4KSN A;  5DZ5 A;  1LJZ A;  1IJC A;  3BT1 U;  1CVO A;  2CRS A;  1TXA A;  2MHY A;  1RGJ A;  3KFD I;  1G6M A;  1LX5 B;  2NBT A;  2H8U A;  1LSI A;  5IMT D;  2BTX A;  1XT3 A;  1CRE A;  1IDI A;  1FSC A;  2QJ9 C;  2UWR A;  4RUD A;  2ERA A;  2X8B B;  1QKD A;  2CCX A;  1V6P A;  2I9B E;  1MAH F;  4BDT B;  2OFS A;  1PLO A;  1FRA A;  1UG4 A;  1CTX A;  1JBD A;  2MJY A;  1ES7 B;  2ABX A;  2HLQ A;  1VB0 A;  5DO6 A;  1W6B A;  1COE A; 
#chains in the Genus database with same CATH homology
 1LXG A;  4BIK B;  1KXI A;  3FEV A;  1I02 A;  2JVE A;  2QJA C;  1FF4 A;  1NYS A;  1TXB A;  1CHV S;  1QKE A;  1ONJ A;  2H64 B;  2LA1 A;  1HAJ A;  1F8U B;  1NTX A;  3VTS A;  2N99 A;  1HAA A;  1IKC A;  2H64 C;  2BHI A;  3U74 U;  3U73 U;  1KTZ B;  1CXO A;  1YWH A;  4OM5 A;  1NEA A;  3BT2 U;  1FAS A;  1BXP A;  4FAO E;  1IDL A;  1JE9 A;  1BTE A;  3EBX A;  2QJB C;  1KL8 A;  6EBX A;  2K3G A;  4ZQY A;  2UX2 A;  2CRT A;  2LCR A;  2FD6 U;  1ABT A;  5IMY C;  1H0J A;  1CDR A;  3NDS A;  1CRF A;  1DRS A;  2VLW A;  1KS6 A;  2MUO A;  1COD A;  4AEA A;  4QTI U;  1REW C;  2H7Z B;  1KU6 B;  1IQ9 A;  1TFS A;  1FSS B;  1NXB A;  2MJ4 A;  1NOR A;  1ERG A;  1TGX A;  4OM4 A;  1IDH A;  3KFD E;  2CDX A;  2L5S A;  4P7U A;  1KC4 A;  2MFA A;  2CTX A;  1JGK A;  1F94 A;  5DU1 A;  1CCQ A;  1HOY A;  1ERA A;  1HC9 A;  1ZAD A;  2L03 A;  2PJY C;  1HC9 B;  2H62 C;  4IYE A;  3QB4 B;  3NEQ A;  1KBT A;  1CB9 A;  3HH7 A;  4XJJ A;  1CDT A;  1KFH A;  4DO8 A;  4LFT A;  1KBS A;  3EVS C;  4EY8 B;  1CDQ A;  1NYU A;  4HQP F;  4UY2 C;  1LXH A;  1S4Y A;  1FFJ A;  2QC1 A;  1NTN A;  2H7Z A;  1B41 B;  4FAO C;  1IK8 A;  2MUP A;  2J8B A;  3NH7 A;  1RL5 A;  1M9Z A;  1MR6 A;  5EBX A;  2MJ0 A;  1CXN A;  1QM7 A;  2GOO B;  1IDG A;  1KBA A;  2H5F A;  2PJY B;  3LAQ U;  2H62 D;  2HLR A;  1CDS A;  3ERA A;  3PLC A;  2GOO C;  1L4W A;  2JQP A;  4KSN A;  5DZ5 A;  1LJZ A;  1IJC A;  3BT1 U;  1CVO A;  2CRS A;  1TXA A;  2MHY A;  1RGJ A;  3KFD I;  1G6M A;  1LX5 B;  2NBT A;  2H8U A;  1LSI A;  5IMT D;  2BTX A;  1XT3 A;  1CRE A;  1IDI A;  1FSC A;  2QJ9 C;  2UWR A;  4RUD A;  2ERA A;  2X8B B;  1QKD A;  2CCX A;  1V6P A;  2I9B E;  1MAH F;  4BDT B;  2OFS A;  1PLO A;  1FRA A;  1UG4 A;  1CTX A;  1JBD A;  2MJY A;  1ES7 B;  2ABX A;  2HLQ A;  1VB0 A;  5DO6 A;  1W6B A;  1COE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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