1DRSA

Three-dimensional structure of the rgd-containing neurotoxin homologue, dendroaspin
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
59
structure length
59
Chain Sequence
RICYNHLGTKPPTTETCQEDSCYKNIWTFDNIIRRGCGCFTPRGDMPGPYCCESDKCNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion protein
source organism Dendroaspis jamesoni kaimosae
publication title Three-dimensional structure of the RGD-containing neurotoxin homologue dendroaspin.
pubmed doi rcsb
molecule keywords DENDROASPIN
total genus 12
structure length 59
sequence length 59
ec nomenclature
pdb deposition date 1994-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1drsA00
2PJYB 1KL8A 2CTXA 4BDTB 2JQPA 4EY8B 2CRTA 1QM7A 4LFTA 1NYUA 2QC1A 3PLCA 2I9BE 1CDTA 1FASA 1MAHF 1LJZA 1NTNA 3EBXA 1IDLA 1REWC 1CODA 1NEAA 1FF4A 1CXOA 1MR6A 1W6BA 2GOOB 1G6MA 2J8BA 1H0JA 1KFHA 1XT3A 6EBXA 2H7ZB 1NORA 1HC9B 5IMTD 1KBAA 2CRSA 1IK8A 3HH7A 1JBDA 4DO8A 2MJYA 2NBTA 2UX2A 1IDHA 1NTXA 1LXGA 4UY2C 1CTXA 2JVEA 2L03A 2H8UA 2GOOC 1KU6B 4FAOE 2QJAC 1CB9A 3BT2U 1M9ZA 1S4YA 1ONJA 2H7ZA 3BT1U 1LSIA 1PLOA 2QJBC 1HC9A 1IDIA 1BTEA 3FEVA 3NDSA 1CDRA 2N99A 1TXBA 1KXIA 2K3GA 3VTSA 1LX5B 2MJ0A 2MFAA 1FRAA 1B41B 1NXBA 1RL5A 2MJ4A 2MHYA 5DU1A 1IQ9A 4ZQYA 1YWHA 1KTZB 2H64C 1DRSA 1BXPA 4OM5A 2ERAA 1VB0A 2L5SA 2LCRA 5DZ5A 2ABXA 2VLWA 1KBTA 1HAAA 2H62C 1ERAA 4OM4A 3LAQU 2H64B 1RGJA 2MUPA 1CDSA 1JE9A 1TGXA 1UG4A 3U74U 1CCQA 1LXHA 1I02A 1FSSB 2X8BB 4AEAA 3KFDE 1IJCA 3NEQA 2CCXA 2HLQA 2H5FA 1TXAA 2MUOA 3ERAA 1FFJA 2BHIA 5IMYC 1IKCA 1F94A 4QTIU 4FAOC 2UWRA 1KBSA 1CHVS 1ES7B 2LA1A 1ERGA 1F8UB 2HLRA 1ABTA 5EBXA 2BTXA 3U73U 1CDQA 1CREA 2FD6U 2QJ9C 3KFDI 1HAJA 2CDXA 3NH7A 3QB4B 4RUDA 4HQPF 5DO6A 4BIKB 4P7UA 3EVSC 1QKDA 1JGKA 1CRFA 1V6PA 2PJYC 1HOYA 1FSCA 2H62D 1TFSA 1KC4A 1KS6A 1CVOA 1ZADA 2OFSA 4IYEA 1L4WA 1IDGA 1QKEA 1CXNA 4XJJA 1COEA 1NYSA
chains in the Genus database with same CATH superfamily
2PJYB 1KL8A 2CTXA 4BDTB 2JQPA 4EY8B 2CRTA 1QM7A 4LFTA 1NYUA 2QC1A 3PLCA 2I9BE 1CDTA 1FASA 1MAHF 1LJZA 1NTNA 3EBXA 1IDLA 1REWC 1CODA 1NEAA 1FF4A 1CXOA 1MR6A 1W6BA 2GOOB 1G6MA 2J8BA 1H0JA 1KFHA 1XT3A 6EBXA 2H7ZB 1NORA 1HC9B 5IMTD 1KBAA 2CRSA 4KSNA 1IK8A 3HH7A 1JBDA 4DO8A 2MJYA 2NBTA 2UX2A 1IDHA 1NTXA 1LXGA 4UY2C 1CTXA 2JVEA 2L03A 2H8UA 2GOOC 1KU6B 4FAOE 2QJAC 1CB9A 3BT2U 1M9ZA 1S4YA 1ONJA 2H7ZA 3BT1U 1LSIA 1PLOA 2QJBC 1HC9A 1IDIA 1BTEA 3FEVA 3NDSA 1CDRA 2N99A 1TXBA 1KXIA 2K3GA 3VTSA 1LX5B 2MJ0A 2MFAA 1FRAA 1B41B 1NXBA 1RL5A 2MJ4A 2MHYA 5DU1A 1IQ9A 4ZQYA 1YWHA 1KTZB 2H64C 1DRSA 1BXPA 4OM5A 2ERAA 1VB0A 2L5SA 2LCRA 5DZ5A 2ABXA 2VLWA 1KBTA 1HAAA 2H62C 1ERAA 4OM4A 3LAQU 2H64B 1RGJA 2MUPA 1CDSA 1JE9A 1TGXA 1UG4A 3U74U 1CCQA 1LXHA 1I02A 1FSSB 2X8BB 4AEAA 3KFDE 1IJCA 3NEQA 2CCXA 2HLQA 2H5FA 1TXAA 2MUOA 3ERAA 1FFJA 2BHIA 5IMYC 1IKCA 1F94A 4QTIU 4FAOC 2UWRA 1KBSA 1CHVS 1ES7B 2LA1A 1ERGA 1F8UB 2HLRA 1ABTA 5EBXA 2BTXA 3U73U 1CDQA 1CREA 2FD6U 2QJ9C 3KFDI 1HAJA 2CDXA 3NH7A 3QB4B 4RUDA 4HQPF 5DO6A 4BIKB 4P7UA 3EVSC 1QKDA 1JGKA 1CRFA 1V6PA 2PJYC 1HOYA 1FSCA 2H62D 1TFSA 1KC4A 1KS6A 1CVOA 1ZADA 2OFSA 4IYEA 1L4WA 1IDGA 1QKEA 1CXNA 4XJJA 1COEA 1NYSA
chains in the Genus database with same CATH topology
2PJYB 1KL8A 2CTXA 4BDTB 2JQPA 4EY8B 2CRTA 1QM7A 4LFTA 1NYUA 2QC1A 3PLCA 2I9BE 1CDTA 1FASA 1MAHF 1LJZA 1NTNA 3EBXA 1IDLA 1REWC 1CODA 1NEAA 1FF4A 1CXOA 1MR6A 1W6BA 2GOOB 1G6MA 2J8BA 1H0JA 1KFHA 1XT3A 6EBXA 2H7ZB 1NORA 1HC9B 5IMTD 1KBAA 2CRSA 4KSNA 1IK8A 3HH7A 1JBDA 4DO8A 2MJYA 2NBTA 2UX2A 1IDHA 1NTXA 1LXGA 4UY2C 1CTXA 2JVEA 2L03A 2H8UA 2GOOC 1KU6B 4FAOE 2QJAC 1CB9A 3BT2U 1M9ZA 1S4YA 1ONJA 2H7ZA 3BT1U 1LSIA 1PLOA 2QJBC 1HC9A 1IDIA 1BTEA 3FEVA 3NDSA 1CDRA 2N99A 1TXBA 1KXIA 2K3GA 3VTSA 1LX5B 2MJ0A 2MFAA 1FRAA 1B41B 1NXBA 1RL5A 2MJ4A 2MHYA 5DU1A 1IQ9A 4ZQYA 1YWHA 1KTZB 2H64C 1DRSA 1BXPA 4OM5A 2ERAA 1VB0A 2L5SA 2LCRA 5DZ5A 2ABXA 2VLWA 1KBTA 1HAAA 2H62C 1ERAA 4OM4A 3LAQU 2H64B 1RGJA 2MUPA 1CDSA 1JE9A 1TGXA 1UG4A 3U74U 1CCQA 1LXHA 1I02A 1FSSB 2X8BB 4AEAA 3KFDE 1IJCA 3NEQA 2CCXA 2HLQA 2H5FA 1TXAA 2MUOA 3ERAA 1FFJA 2BHIA 5IMYC 1IKCA 1F94A 4QTIU 4FAOC 2UWRA 1KBSA 1CHVS 1ES7B 2LA1A 1ERGA 1F8UB 2HLRA 1ABTA 5EBXA 2BTXA 3U73U 1CDQA 1CREA 2FD6U 2QJ9C 3KFDI 1HAJA 2CDXA 3NH7A 3QB4B 4RUDA 4HQPF 5DO6A 4BIKB 4P7UA 3EVSC 1QKDA 1JGKA 1CRFA 1V6PA 2PJYC 1HOYA 1FSCA 2H62D 1TFSA 1KC4A 1KS6A 1CVOA 1ZADA 2OFSA 4IYEA 1L4WA 1IDGA 1QKEA 1CXNA 4XJJA 1COEA 1NYSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PJY B;  1KL8 A;  2CTX A;  4BDT B;  2JQP A;  4EY8 B;  2CRT A;  1QM7 A;  4LFT A;  1NYU A;  2QC1 A;  3PLC A;  2I9B E;  1CDT A;  1FAS A;  1MAH F;  1LJZ A;  1NTN A;  3EBX A;  1IDL A;  1REW C;  1COD A;  1NEA A;  1FF4 A;  1CXO A;  1MR6 A;  1W6B A;  2GOO B;  1G6M A;  2J8B A;  1H0J A;  1KFH A;  1XT3 A;  6EBX A;  2H7Z B;  1NOR A;  1HC9 B;  5IMT D;  1KBA A;  2CRS A;  1IK8 A;  3HH7 A;  1JBD A;  4DO8 A;  2MJY A;  2NBT A;  2UX2 A;  1IDH A;  1NTX A;  1LXG A;  4UY2 C;  1CTX A;  2JVE A;  2L03 A;  2H8U A;  2GOO C;  1KU6 B;  4FAO E;  2QJA C;  1CB9 A;  3BT2 U;  1M9Z A;  1S4Y A;  1ONJ A;  2H7Z A;  3BT1 U;  1LSI A;  1PLO A;  2QJB C;  1HC9 A;  1IDI A;  1BTE A;  3FEV A;  3NDS A;  1CDR A;  2N99 A;  1TXB A;  1KXI A;  2K3G A;  3VTS A;  1LX5 B;  2MJ0 A;  2MFA A;  1FRA A;  1B41 B;  1NXB A;  1RL5 A;  2MJ4 A;  2MHY A;  5DU1 A;  1IQ9 A;  4ZQY A;  1YWH A;  1KTZ B;  2H64 C;  1DRS A;  1BXP A;  4OM5 A;  2ERA A;  1VB0 A;  2L5S A;  2LCR A;  5DZ5 A;  2ABX A;  2VLW A;  1KBT A;  1HAA A;  2H62 C;  1ERA A;  4OM4 A;  3LAQ U;  2H64 B;  1RGJ A;  2MUP A;  1CDS A;  1JE9 A;  1TGX A;  1UG4 A;  3U74 U;  1CCQ A;  1LXH A;  1I02 A;  1FSS B;  2X8B B;  4AEA A;  3KFD E;  1IJC A;  3NEQ A;  2CCX A;  2HLQ A;  2H5F A;  1TXA A;  2MUO A;  3ERA A;  1FFJ A;  2BHI A;  5IMY C;  1IKC A;  1F94 A;  4QTI U;  4FAO C;  2UWR A;  1KBS A;  1CHV S;  1ES7 B;  2LA1 A;  1ERG A;  1F8U B;  2HLR A;  1ABT A;  5EBX A;  2BTX A;  3U73 U;  1CDQ A;  1CRE A;  2FD6 U;  2QJ9 C;  3KFD I;  1HAJ A;  2CDX A;  3NH7 A;  3QB4 B;  4RUD A;  4HQP F;  5DO6 A;  4BIK B;  4P7U A;  3EVS C;  1QKD A;  1JGK A;  1CRF A;  1V6P A;  2PJY C;  1HOY A;  1FSC A;  2H62 D;  1TFS A;  1KC4 A;  1KS6 A;  1CVO A;  1ZAD A;  2OFS A;  4IYE A;  1L4W A;  1IDG A;  1QKE A;  1CXN A;  4XJJ A;  1COE A;  1NYS A; 
#chains in the Genus database with same CATH topology
 2PJY B;  1KL8 A;  2CTX A;  4BDT B;  2JQP A;  4EY8 B;  2CRT A;  1QM7 A;  4LFT A;  1NYU A;  2QC1 A;  3PLC A;  2I9B E;  1CDT A;  1FAS A;  1MAH F;  1LJZ A;  1NTN A;  3EBX A;  1IDL A;  1REW C;  1COD A;  1NEA A;  1FF4 A;  1CXO A;  1MR6 A;  1W6B A;  2GOO B;  1G6M A;  2J8B A;  1H0J A;  1KFH A;  1XT3 A;  6EBX A;  2H7Z B;  1NOR A;  1HC9 B;  5IMT D;  1KBA A;  2CRS A;  4KSN A;  1IK8 A;  3HH7 A;  1JBD A;  4DO8 A;  2MJY A;  2NBT A;  2UX2 A;  1IDH A;  1NTX A;  1LXG A;  4UY2 C;  1CTX A;  2JVE A;  2L03 A;  2H8U A;  2GOO C;  1KU6 B;  4FAO E;  2QJA C;  1CB9 A;  3BT2 U;  1M9Z A;  1S4Y A;  1ONJ A;  2H7Z A;  3BT1 U;  1LSI A;  1PLO A;  2QJB C;  1HC9 A;  1IDI A;  1BTE A;  3FEV A;  3NDS A;  1CDR A;  2N99 A;  1TXB A;  1KXI A;  2K3G A;  3VTS A;  1LX5 B;  2MJ0 A;  2MFA A;  1FRA A;  1B41 B;  1NXB A;  1RL5 A;  2MJ4 A;  2MHY A;  5DU1 A;  1IQ9 A;  4ZQY A;  1YWH A;  1KTZ B;  2H64 C;  1DRS A;  1BXP A;  4OM5 A;  2ERA A;  1VB0 A;  2L5S A;  2LCR A;  5DZ5 A;  2ABX A;  2VLW A;  1KBT A;  1HAA A;  2H62 C;  1ERA A;  4OM4 A;  3LAQ U;  2H64 B;  1RGJ A;  2MUP A;  1CDS A;  1JE9 A;  1TGX A;  1UG4 A;  3U74 U;  1CCQ A;  1LXH A;  1I02 A;  1FSS B;  2X8B B;  4AEA A;  3KFD E;  1IJC A;  3NEQ A;  2CCX A;  2HLQ A;  2H5F A;  1TXA A;  2MUO A;  3ERA A;  1FFJ A;  2BHI A;  5IMY C;  1IKC A;  1F94 A;  4QTI U;  4FAO C;  2UWR A;  1KBS A;  1CHV S;  1ES7 B;  2LA1 A;  1ERG A;  1F8U B;  2HLR A;  1ABT A;  5EBX A;  2BTX A;  3U73 U;  1CDQ A;  1CRE A;  2FD6 U;  2QJ9 C;  3KFD I;  1HAJ A;  2CDX A;  3NH7 A;  3QB4 B;  4RUD A;  4HQP F;  5DO6 A;  4BIK B;  4P7U A;  3EVS C;  1QKD A;  1JGK A;  1CRF A;  1V6P A;  2PJY C;  1HOY A;  1FSC A;  2H62 D;  1TFS A;  1KC4 A;  1KS6 A;  1CVO A;  1ZAD A;  2OFS A;  4IYE A;  1L4W A;  1IDG A;  1QKE A;  1CXN A;  4XJJ A;  1COE A;  1NYS A; 
#chains in the Genus database with same CATH homology
 2PJY B;  1KL8 A;  2CTX A;  4BDT B;  2JQP A;  4EY8 B;  2CRT A;  1QM7 A;  4LFT A;  1NYU A;  2QC1 A;  3PLC A;  2I9B E;  1CDT A;  1FAS A;  1MAH F;  1LJZ A;  1NTN A;  3EBX A;  1IDL A;  1REW C;  1COD A;  1NEA A;  1FF4 A;  1CXO A;  1MR6 A;  1W6B A;  2GOO B;  1G6M A;  2J8B A;  1H0J A;  1KFH A;  1XT3 A;  6EBX A;  2H7Z B;  1NOR A;  1HC9 B;  5IMT D;  1KBA A;  2CRS A;  4KSN A;  1IK8 A;  3HH7 A;  1JBD A;  4DO8 A;  2MJY A;  2NBT A;  2UX2 A;  1IDH A;  1NTX A;  1LXG A;  4UY2 C;  1CTX A;  2JVE A;  2L03 A;  2H8U A;  2GOO C;  1KU6 B;  4FAO E;  2QJA C;  1CB9 A;  3BT2 U;  1M9Z A;  1S4Y A;  1ONJ A;  2H7Z A;  3BT1 U;  1LSI A;  1PLO A;  2QJB C;  1HC9 A;  1IDI A;  1BTE A;  3FEV A;  3NDS A;  1CDR A;  2N99 A;  1TXB A;  1KXI A;  2K3G A;  3VTS A;  1LX5 B;  2MJ0 A;  2MFA A;  1FRA A;  1B41 B;  1NXB A;  1RL5 A;  2MJ4 A;  2MHY A;  5DU1 A;  1IQ9 A;  4ZQY A;  1YWH A;  1KTZ B;  2H64 C;  1DRS A;  1BXP A;  4OM5 A;  2ERA A;  1VB0 A;  2L5S A;  2LCR A;  5DZ5 A;  2ABX A;  2VLW A;  1KBT A;  1HAA A;  2H62 C;  1ERA A;  4OM4 A;  3LAQ U;  2H64 B;  1RGJ A;  2MUP A;  1CDS A;  1JE9 A;  1TGX A;  1UG4 A;  3U74 U;  1CCQ A;  1LXH A;  1I02 A;  1FSS B;  2X8B B;  4AEA A;  3KFD E;  1IJC A;  3NEQ A;  2CCX A;  2HLQ A;  2H5F A;  1TXA A;  2MUO A;  3ERA A;  1FFJ A;  2BHI A;  5IMY C;  1IKC A;  1F94 A;  4QTI U;  4FAO C;  2UWR A;  1KBS A;  1CHV S;  1ES7 B;  2LA1 A;  1ERG A;  1F8U B;  2HLR A;  1ABT A;  5EBX A;  2BTX A;  3U73 U;  1CDQ A;  1CRE A;  2FD6 U;  2QJ9 C;  3KFD I;  1HAJ A;  2CDX A;  3NH7 A;  3QB4 B;  4RUD A;  4HQP F;  5DO6 A;  4BIK B;  4P7U A;  3EVS C;  1QKD A;  1JGK A;  1CRF A;  1V6P A;  2PJY C;  1HOY A;  1FSC A;  2H62 D;  1TFS A;  1KC4 A;  1KS6 A;  1CVO A;  1ZAD A;  2OFS A;  4IYE A;  1L4W A;  1IDG A;  1QKE A;  1CXN A;  4XJJ A;  1COE A;  1NYS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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