1DRSA

Three-dimensional structure of the rgd-containing neurotoxin homologue, dendroaspin
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
59
structure length
59
Chain Sequence
RICYNHLGTKPPTTETCQEDSCYKNIWTFDNIIRRGCGCFTPRGDMPGPYCCESDKCNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion protein
molecule keywords DENDROASPIN
publication title Three-dimensional structure of the RGD-containing neurotoxin homologue dendroaspin.
pubmed doi rcsb
source organism Dendroaspis jamesoni kaimosae
total genus 12
structure length 59
sequence length 59
ec nomenclature
pdb deposition date 1994-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1drsA00
2CRSA 1CREA 1IJCA 1LSIA 1V6PA 4XJJA 1IKCA 1S4YA 3EBXA 2CRTA 1NTXA 2UWRA 3NEQA 3VTSA 4ZQYA 1HC9A 1NORA 1MAHF 2H62C 1NYUA 1QKDA 1NEAA 3EVSC 3QB4B 6EBXA 1TXAA 2MUOA 2H62D 1CDSA 4HQPF 1COEA 5EBXA 4DO8A 2BHIA 1TXBA 2GOOB 1JE9A 2H7ZB 4LFTA 3U73U 1FFJA 4UY2C 3FEVA 1M9ZA 1TFSA 1FF4A 2BTXA 5IMYC 1CTXA 2I9BE 2OFSA 1CDQA 2QJ9C 5DO6A 1QKEA 1CVOA 1KS6A 3BT2U 2MFAA 2HLRA 1H0JA 1BTEA 1F94A 1NTNA 1W6BA 2GOOC 1NXBA 4QTIU 2CDXA 1CB9A 1FRAA 1KL8A 2CCXA 1UG4A 1KBSA 1ES7B 1KU6B 1CODA 2ERAA 2HLQA 1XT3A 2MHYA 1LX5B 2H8UA 3KFDE 1DRSA 2H64B 2JQPA 4OM4A 1MR6A 2MJYA 1BXPA 4IYEA 1IDLA 1ERGA 1KXIA 1CXOA 1I02A 1HC9B 1RL5A 4RUDA 2ABXA 2LA1A 2PJYB 1LJZA 3LAQU 1HAAA 4AEAA 4BDTB 1VB0A 1G6MA 1F8UB 1HOYA 3BT1U 4FAOE 1IDIA 5IMTD 2JVEA 3NDSA 1KC4A 1IDGA 2L5SA 2QJAC 2QJBC 2N99A 1CXNA 1ERAA 2QC1A 1RGJA 1ABTA 2LCRA 3PLCA 1HAJA 5DU1A 1ZADA 1LXHA 1KTZB 1CDTA 2MJ4A 3HH7A 1QM7A 1ONJA 1FSSB 1IQ9A 1FSCA 1REWC 2MUPA 1CCQA 2K3GA 1CRFA 2H7ZA 2H64C 2MJ0A 1FASA 3ERAA 3U74U 1LXGA 4EY8B 1B41B 1CDRA 4BIKB 2X8BB 1IDHA 1IK8A 1NYSA 5DZ5A 1KBTA 2H5FA 2UX2A 1L4WA 2CTXA 1PLOA 2PJYC 4P7UA 4OM5A 3NH7A 2J8BA 2L03A 2NBTA 1JGKA 2VLWA 1JBDA 1TGXA 2FD6U 1KBAA 3KFDI 1KFHA 1YWHA 1CHVS 4FAOC
chains in the Genus database with same CATH superfamily
2CRSA 1CREA 1IJCA 1LSIA 1V6PA 4XJJA 1IKCA 1S4YA 3EBXA 2CRTA 1NTXA 2UWRA 3NEQA 3VTSA 4ZQYA 1HC9A 1NORA 1MAHF 2H62C 1NYUA 1QKDA 1NEAA 3EVSC 3QB4B 6EBXA 1TXAA 2MUOA 2H62D 1CDSA 4HQPF 1COEA 5EBXA 4DO8A 2BHIA 1TXBA 2GOOB 1JE9A 2H7ZB 4LFTA 3U73U 1FFJA 4UY2C 3FEVA 1M9ZA 1TFSA 1FF4A 2BTXA 5IMYC 1CTXA 2I9BE 2OFSA 1CDQA 2QJ9C 5DO6A 1QKEA 1CVOA 1KS6A 3BT2U 2MFAA 2HLRA 1H0JA 1BTEA 1F94A 1NTNA 1W6BA 2GOOC 1NXBA 4QTIU 2CDXA 1CB9A 1FRAA 1KL8A 2CCXA 1UG4A 1KBSA 1ES7B 1KU6B 1CODA 2ERAA 2HLQA 1XT3A 2MHYA 1LX5B 2H8UA 3KFDE 1DRSA 2H64B 2JQPA 4OM4A 1MR6A 2MJYA 1BXPA 4IYEA 1IDLA 1ERGA 1KXIA 1CXOA 1I02A 1HC9B 1RL5A 4RUDA 2ABXA 2LA1A 2PJYB 1LJZA 3LAQU 1HAAA 4AEAA 4BDTB 1VB0A 1G6MA 1F8UB 1HOYA 3BT1U 4FAOE 1IDIA 5IMTD 2JVEA 3NDSA 1KC4A 1IDGA 2L5SA 2QJAC 2QJBC 2N99A 1CXNA 1ERAA 2QC1A 1RGJA 1ABTA 2LCRA 3PLCA 1HAJA 5DU1A 1ZADA 1LXHA 1KTZB 1CDTA 2MJ4A 3HH7A 1QM7A 1ONJA 1FSSB 1IQ9A 1FSCA 1REWC 2MUPA 1CCQA 2K3GA 1CRFA 2H7ZA 2H64C 2MJ0A 1FASA 3ERAA 3U74U 1LXGA 4EY8B 4KSNA 1B41B 1CDRA 4BIKB 2X8BB 1IDHA 1IK8A 1NYSA 5DZ5A 1KBTA 2H5FA 2UX2A 1L4WA 2CTXA 1PLOA 2PJYC 4P7UA 4OM5A 3NH7A 2J8BA 2L03A 2NBTA 1JGKA 2VLWA 1JBDA 1TGXA 2FD6U 1KBAA 3KFDI 1KFHA 1YWHA 1CHVS 4FAOC
chains in the Genus database with same CATH topology
2CRSA 1CREA 1IJCA 1LSIA 1V6PA 4XJJA 1IKCA 1S4YA 3EBXA 2CRTA 1NTXA 2UWRA 3NEQA 3VTSA 4ZQYA 1HC9A 1NORA 1MAHF 2H62C 1NYUA 1QKDA 1NEAA 3EVSC 3QB4B 6EBXA 1TXAA 2MUOA 2H62D 1CDSA 4HQPF 1COEA 5EBXA 4DO8A 2BHIA 1TXBA 2GOOB 1JE9A 2H7ZB 4LFTA 3U73U 1FFJA 4UY2C 3FEVA 1M9ZA 1TFSA 1FF4A 2BTXA 5IMYC 1CTXA 2I9BE 2OFSA 1CDQA 2QJ9C 5DO6A 1QKEA 1CVOA 1KS6A 3BT2U 2MFAA 2HLRA 1H0JA 1BTEA 1F94A 1NTNA 1W6BA 2GOOC 1NXBA 4QTIU 2CDXA 1CB9A 1FRAA 1KL8A 2CCXA 1UG4A 1KBSA 1ES7B 1KU6B 1CODA 2ERAA 2HLQA 1XT3A 2MHYA 1LX5B 2H8UA 3KFDE 1DRSA 2H64B 2JQPA 4OM4A 1MR6A 2MJYA 1BXPA 4IYEA 1IDLA 1ERGA 1KXIA 1CXOA 1I02A 1HC9B 1RL5A 4RUDA 2ABXA 2LA1A 2PJYB 1LJZA 3LAQU 1HAAA 4AEAA 4BDTB 1VB0A 1G6MA 1F8UB 1HOYA 3BT1U 4FAOE 1IDIA 5IMTD 2JVEA 3NDSA 1KC4A 1IDGA 2L5SA 2QJAC 2QJBC 2N99A 1CXNA 1ERAA 2QC1A 1RGJA 1ABTA 2LCRA 3PLCA 1HAJA 5DU1A 1ZADA 1LXHA 1KTZB 1CDTA 2MJ4A 3HH7A 1QM7A 1ONJA 1FSSB 1IQ9A 1FSCA 1REWC 2MUPA 1CCQA 2K3GA 1CRFA 2H7ZA 2H64C 2MJ0A 1FASA 3ERAA 3U74U 1LXGA 4EY8B 4KSNA 1B41B 1CDRA 4BIKB 2X8BB 1IDHA 1IK8A 1NYSA 5DZ5A 1KBTA 2H5FA 2UX2A 1L4WA 2CTXA 1PLOA 2PJYC 4P7UA 4OM5A 3NH7A 2J8BA 2L03A 2NBTA 1JGKA 2VLWA 1JBDA 1TGXA 2FD6U 1KBAA 3KFDI 1KFHA 1YWHA 1CHVS 4FAOC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CRS A;  1CRE A;  1IJC A;  1LSI A;  1V6P A;  4XJJ A;  1IKC A;  1S4Y A;  3EBX A;  2CRT A;  1NTX A;  2UWR A;  3NEQ A;  3VTS A;  4ZQY A;  1HC9 A;  1NOR A;  1MAH F;  2H62 C;  1NYU A;  1QKD A;  1NEA A;  3EVS C;  3QB4 B;  6EBX A;  1TXA A;  2MUO A;  2H62 D;  1CDS A;  4HQP F;  1COE A;  5EBX A;  4DO8 A;  2BHI A;  1TXB A;  2GOO B;  1JE9 A;  2H7Z B;  4LFT A;  3U73 U;  1FFJ A;  4UY2 C;  3FEV A;  1M9Z A;  1TFS A;  1FF4 A;  2BTX A;  5IMY C;  1CTX A;  2I9B E;  2OFS A;  1CDQ A;  2QJ9 C;  5DO6 A;  1QKE A;  1CVO A;  1KS6 A;  3BT2 U;  2MFA A;  2HLR A;  1H0J A;  1BTE A;  1F94 A;  1NTN A;  1W6B A;  2GOO C;  1NXB A;  4QTI U;  2CDX A;  1CB9 A;  1FRA A;  1KL8 A;  2CCX A;  1UG4 A;  1KBS A;  1ES7 B;  1KU6 B;  1COD A;  2ERA A;  2HLQ A;  1XT3 A;  2MHY A;  1LX5 B;  2H8U A;  3KFD E;  1DRS A;  2H64 B;  2JQP A;  4OM4 A;  1MR6 A;  2MJY A;  1BXP A;  4IYE A;  1IDL A;  1ERG A;  1KXI A;  1CXO A;  1I02 A;  1HC9 B;  1RL5 A;  4RUD A;  2ABX A;  2LA1 A;  2PJY B;  1LJZ A;  3LAQ U;  1HAA A;  4AEA A;  4BDT B;  1VB0 A;  1G6M A;  1F8U B;  1HOY A;  3BT1 U;  4FAO E;  1IDI A;  5IMT D;  2JVE A;  3NDS A;  1KC4 A;  1IDG A;  2L5S A;  2QJA C;  2QJB C;  2N99 A;  1CXN A;  1ERA A;  2QC1 A;  1RGJ A;  1ABT A;  2LCR A;  3PLC A;  1HAJ A;  5DU1 A;  1ZAD A;  1LXH A;  1KTZ B;  1CDT A;  2MJ4 A;  3HH7 A;  1QM7 A;  1ONJ A;  1FSS B;  1IQ9 A;  1FSC A;  1REW C;  2MUP A;  1CCQ A;  2K3G A;  1CRF A;  2H7Z A;  2H64 C;  2MJ0 A;  1FAS A;  3ERA A;  3U74 U;  1LXG A;  4EY8 B;  1B41 B;  1CDR A;  4BIK B;  2X8B B;  1IDH A;  1IK8 A;  1NYS A;  5DZ5 A;  1KBT A;  2H5F A;  2UX2 A;  1L4W A;  2CTX A;  1PLO A;  2PJY C;  4P7U A;  4OM5 A;  3NH7 A;  2J8B A;  2L03 A;  2NBT A;  1JGK A;  2VLW A;  1JBD A;  1TGX A;  2FD6 U;  1KBA A;  3KFD I;  1KFH A;  1YWH A;  1CHV S;  4FAO C; 
#chains in the Genus database with same CATH topology
 2CRS A;  1CRE A;  1IJC A;  1LSI A;  1V6P A;  4XJJ A;  1IKC A;  1S4Y A;  3EBX A;  2CRT A;  1NTX A;  2UWR A;  3NEQ A;  3VTS A;  4ZQY A;  1HC9 A;  1NOR A;  1MAH F;  2H62 C;  1NYU A;  1QKD A;  1NEA A;  3EVS C;  3QB4 B;  6EBX A;  1TXA A;  2MUO A;  2H62 D;  1CDS A;  4HQP F;  1COE A;  5EBX A;  4DO8 A;  2BHI A;  1TXB A;  2GOO B;  1JE9 A;  2H7Z B;  4LFT A;  3U73 U;  1FFJ A;  4UY2 C;  3FEV A;  1M9Z A;  1TFS A;  1FF4 A;  2BTX A;  5IMY C;  1CTX A;  2I9B E;  2OFS A;  1CDQ A;  2QJ9 C;  5DO6 A;  1QKE A;  1CVO A;  1KS6 A;  3BT2 U;  2MFA A;  2HLR A;  1H0J A;  1BTE A;  1F94 A;  1NTN A;  1W6B A;  2GOO C;  1NXB A;  4QTI U;  2CDX A;  1CB9 A;  1FRA A;  1KL8 A;  2CCX A;  1UG4 A;  1KBS A;  1ES7 B;  1KU6 B;  1COD A;  2ERA A;  2HLQ A;  1XT3 A;  2MHY A;  1LX5 B;  2H8U A;  3KFD E;  1DRS A;  2H64 B;  2JQP A;  4OM4 A;  1MR6 A;  2MJY A;  1BXP A;  4IYE A;  1IDL A;  1ERG A;  1KXI A;  1CXO A;  1I02 A;  1HC9 B;  1RL5 A;  4RUD A;  2ABX A;  2LA1 A;  2PJY B;  1LJZ A;  3LAQ U;  1HAA A;  4AEA A;  4BDT B;  1VB0 A;  1G6M A;  1F8U B;  1HOY A;  3BT1 U;  4FAO E;  1IDI A;  5IMT D;  2JVE A;  3NDS A;  1KC4 A;  1IDG A;  2L5S A;  2QJA C;  2QJB C;  2N99 A;  1CXN A;  1ERA A;  2QC1 A;  1RGJ A;  1ABT A;  2LCR A;  3PLC A;  1HAJ A;  5DU1 A;  1ZAD A;  1LXH A;  1KTZ B;  1CDT A;  2MJ4 A;  3HH7 A;  1QM7 A;  1ONJ A;  1FSS B;  1IQ9 A;  1FSC A;  1REW C;  2MUP A;  1CCQ A;  2K3G A;  1CRF A;  2H7Z A;  2H64 C;  2MJ0 A;  1FAS A;  3ERA A;  3U74 U;  1LXG A;  4EY8 B;  4KSN A;  1B41 B;  1CDR A;  4BIK B;  2X8B B;  1IDH A;  1IK8 A;  1NYS A;  5DZ5 A;  1KBT A;  2H5F A;  2UX2 A;  1L4W A;  2CTX A;  1PLO A;  2PJY C;  4P7U A;  4OM5 A;  3NH7 A;  2J8B A;  2L03 A;  2NBT A;  1JGK A;  2VLW A;  1JBD A;  1TGX A;  2FD6 U;  1KBA A;  3KFD I;  1KFH A;  1YWH A;  1CHV S;  4FAO C; 
#chains in the Genus database with same CATH homology
 2CRS A;  1CRE A;  1IJC A;  1LSI A;  1V6P A;  4XJJ A;  1IKC A;  1S4Y A;  3EBX A;  2CRT A;  1NTX A;  2UWR A;  3NEQ A;  3VTS A;  4ZQY A;  1HC9 A;  1NOR A;  1MAH F;  2H62 C;  1NYU A;  1QKD A;  1NEA A;  3EVS C;  3QB4 B;  6EBX A;  1TXA A;  2MUO A;  2H62 D;  1CDS A;  4HQP F;  1COE A;  5EBX A;  4DO8 A;  2BHI A;  1TXB A;  2GOO B;  1JE9 A;  2H7Z B;  4LFT A;  3U73 U;  1FFJ A;  4UY2 C;  3FEV A;  1M9Z A;  1TFS A;  1FF4 A;  2BTX A;  5IMY C;  1CTX A;  2I9B E;  2OFS A;  1CDQ A;  2QJ9 C;  5DO6 A;  1QKE A;  1CVO A;  1KS6 A;  3BT2 U;  2MFA A;  2HLR A;  1H0J A;  1BTE A;  1F94 A;  1NTN A;  1W6B A;  2GOO C;  1NXB A;  4QTI U;  2CDX A;  1CB9 A;  1FRA A;  1KL8 A;  2CCX A;  1UG4 A;  1KBS A;  1ES7 B;  1KU6 B;  1COD A;  2ERA A;  2HLQ A;  1XT3 A;  2MHY A;  1LX5 B;  2H8U A;  3KFD E;  1DRS A;  2H64 B;  2JQP A;  4OM4 A;  1MR6 A;  2MJY A;  1BXP A;  4IYE A;  1IDL A;  1ERG A;  1KXI A;  1CXO A;  1I02 A;  1HC9 B;  1RL5 A;  4RUD A;  2ABX A;  2LA1 A;  2PJY B;  1LJZ A;  3LAQ U;  1HAA A;  4AEA A;  4BDT B;  1VB0 A;  1G6M A;  1F8U B;  1HOY A;  3BT1 U;  4FAO E;  1IDI A;  5IMT D;  2JVE A;  3NDS A;  1KC4 A;  1IDG A;  2L5S A;  2QJA C;  2QJB C;  2N99 A;  1CXN A;  1ERA A;  2QC1 A;  1RGJ A;  1ABT A;  2LCR A;  3PLC A;  1HAJ A;  5DU1 A;  1ZAD A;  1LXH A;  1KTZ B;  1CDT A;  2MJ4 A;  3HH7 A;  1QM7 A;  1ONJ A;  1FSS B;  1IQ9 A;  1FSC A;  1REW C;  2MUP A;  1CCQ A;  2K3G A;  1CRF A;  2H7Z A;  2H64 C;  2MJ0 A;  1FAS A;  3ERA A;  3U74 U;  1LXG A;  4EY8 B;  4KSN A;  1B41 B;  1CDR A;  4BIK B;  2X8B B;  1IDH A;  1IK8 A;  1NYS A;  5DZ5 A;  1KBT A;  2H5F A;  2UX2 A;  1L4W A;  2CTX A;  1PLO A;  2PJY C;  4P7U A;  4OM5 A;  3NH7 A;  2J8B A;  2L03 A;  2NBT A;  1JGK A;  2VLW A;  1JBD A;  1TGX A;  2FD6 U;  1KBA A;  3KFD I;  1KFH A;  1YWH A;  1CHV S;  4FAO C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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