1S4YA

Crystal structure of the activin/actriib extracellular domain
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
91
structure length
91
Chain Sequence
RECIYYNANWELERTNQSGLERCEGEQDKRLHCYASWRNSSGTIELVKKGCWLDDFNCYDRQECVATEENPQVYFCCCEGNFCNERFTHLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Mus musculus
publication title A Flexible Activin Explains the Membrane-Dependent Cooperative Assembly of TGF-beta Family Receptors.
pubmed doi rcsb
molecule keywords Activin receptor type IIB precursor
total genus 22
structure length 91
sequence length 91
chains with identical sequence C
ec nomenclature ec 2.7.11.30: Receptor protein serine/threonine kinase.
pdb deposition date 2004-01-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1s4yA00
1NYUA 4BDTB 1NEAA 1REWC 1NXBA 2L5SA 1KU6B 1QKEA 1TFSA 4ZQYA 1VB0A 3U73U 3VTSA 2GOOC 3NDSA 1CDQA 1CCQA 1KL8A 1KBTA 1W6BA 2BHIA 1CODA 4EY8B 2MUPA 1H0JA 3QB4B 2I9BE 5EBXA 1CRFA 3NH7A 2BTXA 1CREA 2LCRA 1IDHA 1MAHF 1M9ZA 5IMTD 2QJBC 1F8UB 2MJ4A 2ABXA 1G6MA 1NTNA 1I02A 1CVOA 4XJJA 1TXAA 4LFTA 2QJ9C 2MJ0A 4RUDA 1KTZB 1F94A 4DO8A 1ES7B 3ERAA 2H64B 3U74U 3PLCA 1ERAA 2MUOA 4OM4A 1CB9A 2CTXA 1QM7A 1NORA 1BTEA 2JVEA 1FRAA 2L03A 1UG4A 1ONJA 1ZADA 2MHYA 4AEAA 4FAOE 1HAJA 1KXIA 2GOOB 5DO6A 1KC4A 1FSCA 1L4WA 2CDXA 2OFSA 1IDIA 2QJAC 1LXHA 1B41B 2JQPA 1HC9A 1IKCA 4IYEA 1HC9B 1BXPA 2H62D 1HAAA 1LX5B 1IJCA 2PJYC 1ERGA 3KFDI 4OM5A 1CXOA 1LSIA 1JE9A 1PLOA 3FEVA 1LXGA 2HLQA 2NBTA 4QTIU 1V6PA 1MR6A 5IMYC 1KFHA 1CXNA 3LAQU 1KS6A 1XT3A 4BIKB 1IQ9A 2H7ZA 2K3GA 1TGXA 1KBAA 2H7ZB 6EBXA 3BT2U 2H8UA 4FAOC 3HH7A 1DRSA 1QKDA 4UY2C 2X8BB 2UX2A 2QC1A 2HLRA 2N99A 1CHVS 1IK8A 1CDRA 1FF4A 4HQPF 2UWRA 3BT1U 2CRTA 1TXBA 1KBSA 1RL5A 2CCXA 2CRSA 1COEA 1RGJA 1FSSB 3KFDE 2H62C 1FASA 3NEQA 1IDGA 2LA1A 2MFAA 5DU1A 2VLWA 1CTXA 1LJZA 2MJYA 1JGKA 3EVSC 1NTXA 5DZ5A 1HOYA 2FD6U 1JBDA 2J8BA 3EBXA 1CDTA 1NYSA 2PJYB 2H5FA 4P7UA 1CDSA 2H64C 1FFJA 1YWHA 1IDLA 2ERAA 1ABTA 1S4YA
chains in the Genus database with same CATH superfamily
1NYUA 4BDTB 1NEAA 1REWC 1NXBA 2L5SA 1KU6B 1QKEA 1TFSA 4ZQYA 1VB0A 3U73U 3VTSA 2GOOC 3NDSA 1CDQA 1CCQA 1KL8A 1KBTA 1W6BA 2BHIA 1CODA 4EY8B 2MUPA 1H0JA 3QB4B 2I9BE 5EBXA 1CRFA 3NH7A 2BTXA 1CREA 2LCRA 1IDHA 1MAHF 1M9ZA 5IMTD 2QJBC 1F8UB 2MJ4A 2ABXA 1G6MA 1NTNA 1I02A 1CVOA 4XJJA 1TXAA 4LFTA 2QJ9C 2MJ0A 4RUDA 1KTZB 1F94A 4DO8A 1ES7B 3ERAA 2H64B 3U74U 3PLCA 1ERAA 2MUOA 4OM4A 1CB9A 2CTXA 1QM7A 1NORA 1BTEA 2JVEA 1FRAA 2L03A 1UG4A 1ONJA 1ZADA 2MHYA 4AEAA 4FAOE 1HAJA 1KXIA 2GOOB 5DO6A 1KC4A 1FSCA 1L4WA 2CDXA 2OFSA 1IDIA 2QJAC 1LXHA 1B41B 2JQPA 1HC9A 1IKCA 4KSNA 4IYEA 1HC9B 1BXPA 2H62D 1HAAA 1LX5B 1IJCA 2PJYC 1ERGA 3KFDI 4OM5A 1CXOA 1LSIA 1JE9A 1PLOA 3FEVA 1LXGA 2HLQA 2NBTA 4QTIU 1V6PA 1MR6A 5IMYC 1KFHA 1CXNA 3LAQU 1KS6A 1XT3A 4BIKB 1IQ9A 2H7ZA 2K3GA 1TGXA 1KBAA 2H7ZB 6EBXA 3BT2U 2H8UA 4FAOC 3HH7A 1DRSA 1QKDA 4UY2C 2X8BB 2UX2A 2QC1A 2HLRA 2N99A 1CHVS 1IK8A 1CDRA 1FF4A 4HQPF 2UWRA 3BT1U 2CRTA 1TXBA 1KBSA 1RL5A 2CCXA 2CRSA 1COEA 1RGJA 1FSSB 3KFDE 2H62C 1FASA 3NEQA 1IDGA 2LA1A 2MFAA 5DU1A 2VLWA 1CTXA 1LJZA 2MJYA 1JGKA 3EVSC 1NTXA 5DZ5A 1HOYA 2FD6U 1JBDA 2J8BA 3EBXA 1CDTA 1NYSA 2PJYB 2H5FA 4P7UA 1CDSA 2H64C 1FFJA 1YWHA 1IDLA 2ERAA 1ABTA 1S4YA
chains in the Genus database with same CATH topology
1NYUA 4BDTB 1NEAA 1REWC 1NXBA 2L5SA 1KU6B 1QKEA 1TFSA 4ZQYA 1VB0A 3U73U 3VTSA 2GOOC 3NDSA 1CDQA 1CCQA 1KL8A 1KBTA 1W6BA 2BHIA 1CODA 4EY8B 2MUPA 1H0JA 3QB4B 2I9BE 5EBXA 1CRFA 3NH7A 2BTXA 1CREA 2LCRA 1IDHA 1MAHF 1M9ZA 5IMTD 2QJBC 1F8UB 2MJ4A 2ABXA 1G6MA 1NTNA 1I02A 1CVOA 4XJJA 1TXAA 4LFTA 2QJ9C 2MJ0A 4RUDA 1KTZB 1F94A 4DO8A 1ES7B 3ERAA 2H64B 3U74U 3PLCA 1ERAA 2MUOA 4OM4A 1CB9A 2CTXA 1QM7A 1NORA 1BTEA 2JVEA 1FRAA 2L03A 1UG4A 1ONJA 1ZADA 2MHYA 4AEAA 4FAOE 1HAJA 1KXIA 2GOOB 5DO6A 1KC4A 1FSCA 1L4WA 2CDXA 2OFSA 1IDIA 2QJAC 1LXHA 1B41B 2JQPA 1HC9A 1IKCA 4KSNA 4IYEA 1HC9B 1BXPA 2H62D 1HAAA 1LX5B 1IJCA 2PJYC 1ERGA 3KFDI 4OM5A 1CXOA 1LSIA 1JE9A 1PLOA 3FEVA 1LXGA 2HLQA 2NBTA 4QTIU 1V6PA 1MR6A 5IMYC 1KFHA 1CXNA 3LAQU 1KS6A 1XT3A 4BIKB 1IQ9A 2H7ZA 2K3GA 1TGXA 1KBAA 2H7ZB 6EBXA 3BT2U 2H8UA 4FAOC 3HH7A 1DRSA 1QKDA 4UY2C 2X8BB 2UX2A 2QC1A 2HLRA 2N99A 1CHVS 1IK8A 1CDRA 1FF4A 4HQPF 2UWRA 3BT1U 2CRTA 1TXBA 1KBSA 1RL5A 2CCXA 2CRSA 1COEA 1RGJA 1FSSB 3KFDE 2H62C 1FASA 3NEQA 1IDGA 2LA1A 2MFAA 5DU1A 2VLWA 1CTXA 1LJZA 2MJYA 1JGKA 3EVSC 1NTXA 5DZ5A 1HOYA 2FD6U 1JBDA 2J8BA 3EBXA 1CDTA 1NYSA 2PJYB 2H5FA 4P7UA 1CDSA 2H64C 1FFJA 1YWHA 1IDLA 2ERAA 1ABTA 1S4YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NYU A;  4BDT B;  1NEA A;  1REW C;  1NXB A;  2L5S A;  1KU6 B;  1QKE A;  1TFS A;  4ZQY A;  1VB0 A;  3U73 U;  3VTS A;  2GOO C;  3NDS A;  1CDQ A;  1CCQ A;  1KL8 A;  1KBT A;  1W6B A;  2BHI A;  1COD A;  4EY8 B;  2MUP A;  1H0J A;  3QB4 B;  2I9B E;  5EBX A;  1CRF A;  3NH7 A;  2BTX A;  1CRE A;  2LCR A;  1IDH A;  1MAH F;  1M9Z A;  5IMT D;  2QJB C;  1F8U B;  2MJ4 A;  2ABX A;  1G6M A;  1NTN A;  1I02 A;  1CVO A;  4XJJ A;  1TXA A;  4LFT A;  2QJ9 C;  2MJ0 A;  4RUD A;  1KTZ B;  1F94 A;  4DO8 A;  1ES7 B;  3ERA A;  2H64 B;  3U74 U;  3PLC A;  1ERA A;  2MUO A;  4OM4 A;  1CB9 A;  2CTX A;  1QM7 A;  1NOR A;  1BTE A;  2JVE A;  1FRA A;  2L03 A;  1UG4 A;  1ONJ A;  1ZAD A;  2MHY A;  4AEA A;  4FAO E;  1HAJ A;  1KXI A;  2GOO B;  5DO6 A;  1KC4 A;  1FSC A;  1L4W A;  2CDX A;  2OFS A;  1IDI A;  2QJA C;  1LXH A;  1B41 B;  2JQP A;  1HC9 A;  1IKC A;  4IYE A;  1HC9 B;  1BXP A;  2H62 D;  1HAA A;  1LX5 B;  1IJC A;  2PJY C;  1ERG A;  3KFD I;  4OM5 A;  1CXO A;  1LSI A;  1JE9 A;  1PLO A;  3FEV A;  1LXG A;  2HLQ A;  2NBT A;  4QTI U;  1V6P A;  1MR6 A;  5IMY C;  1KFH A;  1CXN A;  3LAQ U;  1KS6 A;  1XT3 A;  4BIK B;  1IQ9 A;  2H7Z A;  2K3G A;  1TGX A;  1KBA A;  2H7Z B;  6EBX A;  3BT2 U;  2H8U A;  4FAO C;  3HH7 A;  1DRS A;  1QKD A;  4UY2 C;  2X8B B;  2UX2 A;  2QC1 A;  2HLR A;  2N99 A;  1CHV S;  1IK8 A;  1CDR A;  1FF4 A;  4HQP F;  2UWR A;  3BT1 U;  2CRT A;  1TXB A;  1KBS A;  1RL5 A;  2CCX A;  2CRS A;  1COE A;  1RGJ A;  1FSS B;  3KFD E;  2H62 C;  1FAS A;  3NEQ A;  1IDG A;  2LA1 A;  2MFA A;  5DU1 A;  2VLW A;  1CTX A;  1LJZ A;  2MJY A;  1JGK A;  3EVS C;  1NTX A;  5DZ5 A;  1HOY A;  2FD6 U;  1JBD A;  2J8B A;  3EBX A;  1CDT A;  1NYS A;  2PJY B;  2H5F A;  4P7U A;  1CDS A;  2H64 C;  1FFJ A;  1YWH A;  1IDL A;  2ERA A;  1ABT A;  1S4Y A; 
#chains in the Genus database with same CATH topology
 1NYU A;  4BDT B;  1NEA A;  1REW C;  1NXB A;  2L5S A;  1KU6 B;  1QKE A;  1TFS A;  4ZQY A;  1VB0 A;  3U73 U;  3VTS A;  2GOO C;  3NDS A;  1CDQ A;  1CCQ A;  1KL8 A;  1KBT A;  1W6B A;  2BHI A;  1COD A;  4EY8 B;  2MUP A;  1H0J A;  3QB4 B;  2I9B E;  5EBX A;  1CRF A;  3NH7 A;  2BTX A;  1CRE A;  2LCR A;  1IDH A;  1MAH F;  1M9Z A;  5IMT D;  2QJB C;  1F8U B;  2MJ4 A;  2ABX A;  1G6M A;  1NTN A;  1I02 A;  1CVO A;  4XJJ A;  1TXA A;  4LFT A;  2QJ9 C;  2MJ0 A;  4RUD A;  1KTZ B;  1F94 A;  4DO8 A;  1ES7 B;  3ERA A;  2H64 B;  3U74 U;  3PLC A;  1ERA A;  2MUO A;  4OM4 A;  1CB9 A;  2CTX A;  1QM7 A;  1NOR A;  1BTE A;  2JVE A;  1FRA A;  2L03 A;  1UG4 A;  1ONJ A;  1ZAD A;  2MHY A;  4AEA A;  4FAO E;  1HAJ A;  1KXI A;  2GOO B;  5DO6 A;  1KC4 A;  1FSC A;  1L4W A;  2CDX A;  2OFS A;  1IDI A;  2QJA C;  1LXH A;  1B41 B;  2JQP A;  1HC9 A;  1IKC A;  4KSN A;  4IYE A;  1HC9 B;  1BXP A;  2H62 D;  1HAA A;  1LX5 B;  1IJC A;  2PJY C;  1ERG A;  3KFD I;  4OM5 A;  1CXO A;  1LSI A;  1JE9 A;  1PLO A;  3FEV A;  1LXG A;  2HLQ A;  2NBT A;  4QTI U;  1V6P A;  1MR6 A;  5IMY C;  1KFH A;  1CXN A;  3LAQ U;  1KS6 A;  1XT3 A;  4BIK B;  1IQ9 A;  2H7Z A;  2K3G A;  1TGX A;  1KBA A;  2H7Z B;  6EBX A;  3BT2 U;  2H8U A;  4FAO C;  3HH7 A;  1DRS A;  1QKD A;  4UY2 C;  2X8B B;  2UX2 A;  2QC1 A;  2HLR A;  2N99 A;  1CHV S;  1IK8 A;  1CDR A;  1FF4 A;  4HQP F;  2UWR A;  3BT1 U;  2CRT A;  1TXB A;  1KBS A;  1RL5 A;  2CCX A;  2CRS A;  1COE A;  1RGJ A;  1FSS B;  3KFD E;  2H62 C;  1FAS A;  3NEQ A;  1IDG A;  2LA1 A;  2MFA A;  5DU1 A;  2VLW A;  1CTX A;  1LJZ A;  2MJY A;  1JGK A;  3EVS C;  1NTX A;  5DZ5 A;  1HOY A;  2FD6 U;  1JBD A;  2J8B A;  3EBX A;  1CDT A;  1NYS A;  2PJY B;  2H5F A;  4P7U A;  1CDS A;  2H64 C;  1FFJ A;  1YWH A;  1IDL A;  2ERA A;  1ABT A;  1S4Y A; 
#chains in the Genus database with same CATH homology
 1NYU A;  4BDT B;  1NEA A;  1REW C;  1NXB A;  2L5S A;  1KU6 B;  1QKE A;  1TFS A;  4ZQY A;  1VB0 A;  3U73 U;  3VTS A;  2GOO C;  3NDS A;  1CDQ A;  1CCQ A;  1KL8 A;  1KBT A;  1W6B A;  2BHI A;  1COD A;  4EY8 B;  2MUP A;  1H0J A;  3QB4 B;  2I9B E;  5EBX A;  1CRF A;  3NH7 A;  2BTX A;  1CRE A;  2LCR A;  1IDH A;  1MAH F;  1M9Z A;  5IMT D;  2QJB C;  1F8U B;  2MJ4 A;  2ABX A;  1G6M A;  1NTN A;  1I02 A;  1CVO A;  4XJJ A;  1TXA A;  4LFT A;  2QJ9 C;  2MJ0 A;  4RUD A;  1KTZ B;  1F94 A;  4DO8 A;  1ES7 B;  3ERA A;  2H64 B;  3U74 U;  3PLC A;  1ERA A;  2MUO A;  4OM4 A;  1CB9 A;  2CTX A;  1QM7 A;  1NOR A;  1BTE A;  2JVE A;  1FRA A;  2L03 A;  1UG4 A;  1ONJ A;  1ZAD A;  2MHY A;  4AEA A;  4FAO E;  1HAJ A;  1KXI A;  2GOO B;  5DO6 A;  1KC4 A;  1FSC A;  1L4W A;  2CDX A;  2OFS A;  1IDI A;  2QJA C;  1LXH A;  1B41 B;  2JQP A;  1HC9 A;  1IKC A;  4KSN A;  4IYE A;  1HC9 B;  1BXP A;  2H62 D;  1HAA A;  1LX5 B;  1IJC A;  2PJY C;  1ERG A;  3KFD I;  4OM5 A;  1CXO A;  1LSI A;  1JE9 A;  1PLO A;  3FEV A;  1LXG A;  2HLQ A;  2NBT A;  4QTI U;  1V6P A;  1MR6 A;  5IMY C;  1KFH A;  1CXN A;  3LAQ U;  1KS6 A;  1XT3 A;  4BIK B;  1IQ9 A;  2H7Z A;  2K3G A;  1TGX A;  1KBA A;  2H7Z B;  6EBX A;  3BT2 U;  2H8U A;  4FAO C;  3HH7 A;  1DRS A;  1QKD A;  4UY2 C;  2X8B B;  2UX2 A;  2QC1 A;  2HLR A;  2N99 A;  1CHV S;  1IK8 A;  1CDR A;  1FF4 A;  4HQP F;  2UWR A;  3BT1 U;  2CRT A;  1TXB A;  1KBS A;  1RL5 A;  2CCX A;  2CRS A;  1COE A;  1RGJ A;  1FSS B;  3KFD E;  2H62 C;  1FAS A;  3NEQ A;  1IDG A;  2LA1 A;  2MFA A;  5DU1 A;  2VLW A;  1CTX A;  1LJZ A;  2MJY A;  1JGK A;  3EVS C;  1NTX A;  5DZ5 A;  1HOY A;  2FD6 U;  1JBD A;  2J8B A;  3EBX A;  1CDT A;  1NYS A;  2PJY B;  2H5F A;  4P7U A;  1CDS A;  2H64 C;  1FFJ A;  1YWH A;  1IDL A;  2ERA A;  1ABT A;  1S4Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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