2MUOA

Structure of the trans-(tyr39-pro40) form of the human secreted ly-6/upar related protein-1 (slurp-1)
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
82
structure length
82
Chain Sequence
MLKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVATDPDSIGAAHLIFCCFRDLCNSEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Neuropeptide
source organism Homo sapiens
publication title Structural and Functional Properties of Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1) Imply a Non-Canonical Mode of Interaction with 7 nAChR
rcsb
molecule keywords Secreted Ly-6/uPAR-related protein 1
total genus 5
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2014-09-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2muoA00
4RUDA 1HAAA 1UG4A 2H62C 2MJ4A 3EBXA 4AEAA 2MFAA 2UX2A 1KC4A 2L5SA 3ERAA 5DU1A 1KXIA 2FD6U 2QJBC 1CVOA 4FAOE 1NTNA 1TFSA 1NYUA 1KBTA 1ABTA 1QKEA 4BDTB 3VTSA 1CDSA 1FSCA 4IYEA 3EVSC 4DO8A 1QKDA 2NBTA 1CHVS 2MUPA 1NEAA 1IDHA 1F94A 1JGKA 1NORA 3U74U 4ZQYA 1CREA 4FAOC 3U73U 1VB0A 2H8UA 4EY8B 1BXPA 2X8BB 1MAHF 2ERAA 2UWRA 1FRAA 1CXOA 1LXGA 2BHIA 2JQPA 4XJJA 2K3GA 2CRTA 3QB4B 1COEA 1L4WA 1IDIA 1ERGA 1QM7A 6EBXA 3LAQU 1DRSA 2H64B 1ERAA 1MR6A 1CDTA 1H0JA 1NYSA 1S4YA 1IDLA 1HC9B 4OM5A 1KS6A 2GOOC 2MJ0A 1CCQA 5IMYC 1F8UB 1TGXA 3KFDE 3HH7A 1IKCA 3NDSA 2JVEA 1IJCA 1HAJA 1BTEA 1JE9A 3BT2U 1ONJA 1ES7B 2QC1A 1JBDA 3NEQA 1W6BA 1IK8A 2QJAC 1HOYA 1HC9A 4LFTA 2MUOA 1CTXA 2PJYC 1FSSB 2HLQA 1FFJA 1RL5A 1LX5B 4QTIU 1CXNA 3FEVA 2GOOB 4UY2C 1CB9A 1CDQA 2CRSA 2L03A 1KBAA 2MHYA 1FF4A 2H5FA 1ZADA 3NH7A 1LJZA 2H7ZB 2CDXA 2I9BE 1NTXA 1PLOA 2CTXA 1KL8A 3KFDI 1KU6B 4OM4A 5DO6A 5DZ5A 2N99A 1M9ZA 2LA1A 1IDGA 1REWC 1FASA 1V6PA 1G6MA 3BT1U 1KBSA 2PJYB 2H62D 1IQ9A 1LXHA 3PLCA 5IMTD 1KFHA 1KTZB 2H7ZA 4HQPF 1CODA 1LSIA 2CCXA 2J8BA 2OFSA 2LCRA 1YWHA 2HLRA 4BIKB 2H64C 1CRFA 1B41B 1TXAA 1RGJA 2BTXA 2VLWA 1CDRA 1XT3A 5EBXA 1NXBA 1TXBA 2MJYA 2QJ9C 2ABXA 4P7UA 1I02A
chains in the Genus database with same CATH superfamily
4RUDA 1HAAA 1UG4A 2H62C 2MJ4A 3EBXA 4AEAA 2MFAA 2UX2A 1KC4A 2L5SA 3ERAA 5DU1A 1KXIA 2FD6U 2QJBC 1CVOA 4FAOE 1NTNA 1TFSA 1NYUA 1KBTA 1ABTA 1QKEA 4BDTB 3VTSA 1CDSA 1FSCA 4IYEA 3EVSC 4DO8A 1QKDA 2NBTA 1CHVS 2MUPA 1NEAA 1IDHA 1F94A 1JGKA 1NORA 3U74U 4ZQYA 1CREA 4FAOC 3U73U 1VB0A 4KSNA 2H8UA 4EY8B 1BXPA 2X8BB 1MAHF 2ERAA 2UWRA 1FRAA 1CXOA 1LXGA 2BHIA 2JQPA 4XJJA 2K3GA 2CRTA 3QB4B 1COEA 1L4WA 1IDIA 1ERGA 1QM7A 6EBXA 3LAQU 1DRSA 2H64B 1ERAA 1MR6A 1CDTA 1H0JA 1NYSA 1S4YA 1IDLA 1HC9B 4OM5A 1KS6A 2GOOC 2MJ0A 1CCQA 5IMYC 1F8UB 1TGXA 3KFDE 3HH7A 1IKCA 3NDSA 2JVEA 1IJCA 1HAJA 1BTEA 1JE9A 3BT2U 1ONJA 1ES7B 2QC1A 1JBDA 3NEQA 1W6BA 1IK8A 2QJAC 1HOYA 1HC9A 4LFTA 2MUOA 1CTXA 2PJYC 1FSSB 2HLQA 1FFJA 1RL5A 1LX5B 4QTIU 1CXNA 3FEVA 2GOOB 4UY2C 1CB9A 1CDQA 2CRSA 2L03A 1KBAA 2MHYA 1FF4A 2H5FA 1ZADA 3NH7A 1LJZA 2H7ZB 2CDXA 2I9BE 1NTXA 1PLOA 2CTXA 1KL8A 3KFDI 1KU6B 4OM4A 5DO6A 5DZ5A 2N99A 1M9ZA 2LA1A 1IDGA 1REWC 1FASA 1V6PA 1G6MA 3BT1U 1KBSA 2PJYB 2H62D 1IQ9A 1LXHA 3PLCA 5IMTD 1KFHA 1KTZB 2H7ZA 4HQPF 1CODA 1LSIA 2CCXA 2J8BA 2OFSA 2LCRA 1YWHA 2HLRA 4BIKB 2H64C 1CRFA 1B41B 1TXAA 1RGJA 2BTXA 2VLWA 1CDRA 1XT3A 5EBXA 1NXBA 1TXBA 2MJYA 2QJ9C 2ABXA 4P7UA 1I02A
chains in the Genus database with same CATH topology
4RUDA 1HAAA 1UG4A 2H62C 2MJ4A 3EBXA 4AEAA 2MFAA 2UX2A 1KC4A 2L5SA 3ERAA 5DU1A 1KXIA 2FD6U 2QJBC 1CVOA 4FAOE 1NTNA 1TFSA 1NYUA 1KBTA 1ABTA 1QKEA 4BDTB 3VTSA 1CDSA 1FSCA 4IYEA 3EVSC 4DO8A 1QKDA 2NBTA 1CHVS 2MUPA 1NEAA 1IDHA 1F94A 1JGKA 1NORA 3U74U 4ZQYA 1CREA 4FAOC 3U73U 1VB0A 4KSNA 2H8UA 4EY8B 1BXPA 2X8BB 1MAHF 2ERAA 2UWRA 1FRAA 1CXOA 1LXGA 2BHIA 2JQPA 4XJJA 2K3GA 2CRTA 3QB4B 1COEA 1L4WA 1IDIA 1ERGA 1QM7A 6EBXA 3LAQU 1DRSA 2H64B 1ERAA 1MR6A 1CDTA 1H0JA 1NYSA 1S4YA 1IDLA 1HC9B 4OM5A 1KS6A 2GOOC 2MJ0A 1CCQA 5IMYC 1F8UB 1TGXA 3KFDE 3HH7A 1IKCA 3NDSA 2JVEA 1IJCA 1HAJA 1BTEA 1JE9A 3BT2U 1ONJA 1ES7B 2QC1A 1JBDA 3NEQA 1W6BA 1IK8A 2QJAC 1HOYA 1HC9A 4LFTA 2MUOA 1CTXA 2PJYC 1FSSB 2HLQA 1FFJA 1RL5A 1LX5B 4QTIU 1CXNA 3FEVA 2GOOB 4UY2C 1CB9A 1CDQA 2CRSA 2L03A 1KBAA 2MHYA 1FF4A 2H5FA 1ZADA 3NH7A 1LJZA 2H7ZB 2CDXA 2I9BE 1NTXA 1PLOA 2CTXA 1KL8A 3KFDI 1KU6B 4OM4A 5DO6A 5DZ5A 2N99A 1M9ZA 2LA1A 1IDGA 1REWC 1FASA 1V6PA 1G6MA 3BT1U 1KBSA 2PJYB 2H62D 1IQ9A 1LXHA 3PLCA 5IMTD 1KFHA 1KTZB 2H7ZA 4HQPF 1CODA 1LSIA 2CCXA 2J8BA 2OFSA 2LCRA 1YWHA 2HLRA 4BIKB 2H64C 1CRFA 1B41B 1TXAA 1RGJA 2BTXA 2VLWA 1CDRA 1XT3A 5EBXA 1NXBA 1TXBA 2MJYA 2QJ9C 2ABXA 4P7UA 1I02A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RUD A;  1HAA A;  1UG4 A;  2H62 C;  2MJ4 A;  3EBX A;  4AEA A;  2MFA A;  2UX2 A;  1KC4 A;  2L5S A;  3ERA A;  5DU1 A;  1KXI A;  2FD6 U;  2QJB C;  1CVO A;  4FAO E;  1NTN A;  1TFS A;  1NYU A;  1KBT A;  1ABT A;  1QKE A;  4BDT B;  3VTS A;  1CDS A;  1FSC A;  4IYE A;  3EVS C;  4DO8 A;  1QKD A;  2NBT A;  1CHV S;  2MUP A;  1NEA A;  1IDH A;  1F94 A;  1JGK A;  1NOR A;  3U74 U;  4ZQY A;  1CRE A;  4FAO C;  3U73 U;  1VB0 A;  2H8U A;  4EY8 B;  1BXP A;  2X8B B;  1MAH F;  2ERA A;  2UWR A;  1FRA A;  1CXO A;  1LXG A;  2BHI A;  2JQP A;  4XJJ A;  2K3G A;  2CRT A;  3QB4 B;  1COE A;  1L4W A;  1IDI A;  1ERG A;  1QM7 A;  6EBX A;  3LAQ U;  1DRS A;  2H64 B;  1ERA A;  1MR6 A;  1CDT A;  1H0J A;  1NYS A;  1S4Y A;  1IDL A;  1HC9 B;  4OM5 A;  1KS6 A;  2GOO C;  2MJ0 A;  1CCQ A;  5IMY C;  1F8U B;  1TGX A;  3KFD E;  3HH7 A;  1IKC A;  3NDS A;  2JVE A;  1IJC A;  1HAJ A;  1BTE A;  1JE9 A;  3BT2 U;  1ONJ A;  1ES7 B;  2QC1 A;  1JBD A;  3NEQ A;  1W6B A;  1IK8 A;  2QJA C;  1HOY A;  1HC9 A;  4LFT A;  2MUO A;  1CTX A;  2PJY C;  1FSS B;  2HLQ A;  1FFJ A;  1RL5 A;  1LX5 B;  4QTI U;  1CXN A;  3FEV A;  2GOO B;  4UY2 C;  1CB9 A;  1CDQ A;  2CRS A;  2L03 A;  1KBA A;  2MHY A;  1FF4 A;  2H5F A;  1ZAD A;  3NH7 A;  1LJZ A;  2H7Z B;  2CDX A;  2I9B E;  1NTX A;  1PLO A;  2CTX A;  1KL8 A;  3KFD I;  1KU6 B;  4OM4 A;  5DO6 A;  5DZ5 A;  2N99 A;  1M9Z A;  2LA1 A;  1IDG A;  1REW C;  1FAS A;  1V6P A;  1G6M A;  3BT1 U;  1KBS A;  2PJY B;  2H62 D;  1IQ9 A;  1LXH A;  3PLC A;  5IMT D;  1KFH A;  1KTZ B;  2H7Z A;  4HQP F;  1COD A;  1LSI A;  2CCX A;  2J8B A;  2OFS A;  2LCR A;  1YWH A;  2HLR A;  4BIK B;  2H64 C;  1CRF A;  1B41 B;  1TXA A;  1RGJ A;  2BTX A;  2VLW A;  1CDR A;  1XT3 A;  5EBX A;  1NXB A;  1TXB A;  2MJY A;  2QJ9 C;  2ABX A;  4P7U A;  1I02 A; 
#chains in the Genus database with same CATH topology
 4RUD A;  1HAA A;  1UG4 A;  2H62 C;  2MJ4 A;  3EBX A;  4AEA A;  2MFA A;  2UX2 A;  1KC4 A;  2L5S A;  3ERA A;  5DU1 A;  1KXI A;  2FD6 U;  2QJB C;  1CVO A;  4FAO E;  1NTN A;  1TFS A;  1NYU A;  1KBT A;  1ABT A;  1QKE A;  4BDT B;  3VTS A;  1CDS A;  1FSC A;  4IYE A;  3EVS C;  4DO8 A;  1QKD A;  2NBT A;  1CHV S;  2MUP A;  1NEA A;  1IDH A;  1F94 A;  1JGK A;  1NOR A;  3U74 U;  4ZQY A;  1CRE A;  4FAO C;  3U73 U;  1VB0 A;  4KSN A;  2H8U A;  4EY8 B;  1BXP A;  2X8B B;  1MAH F;  2ERA A;  2UWR A;  1FRA A;  1CXO A;  1LXG A;  2BHI A;  2JQP A;  4XJJ A;  2K3G A;  2CRT A;  3QB4 B;  1COE A;  1L4W A;  1IDI A;  1ERG A;  1QM7 A;  6EBX A;  3LAQ U;  1DRS A;  2H64 B;  1ERA A;  1MR6 A;  1CDT A;  1H0J A;  1NYS A;  1S4Y A;  1IDL A;  1HC9 B;  4OM5 A;  1KS6 A;  2GOO C;  2MJ0 A;  1CCQ A;  5IMY C;  1F8U B;  1TGX A;  3KFD E;  3HH7 A;  1IKC A;  3NDS A;  2JVE A;  1IJC A;  1HAJ A;  1BTE A;  1JE9 A;  3BT2 U;  1ONJ A;  1ES7 B;  2QC1 A;  1JBD A;  3NEQ A;  1W6B A;  1IK8 A;  2QJA C;  1HOY A;  1HC9 A;  4LFT A;  2MUO A;  1CTX A;  2PJY C;  1FSS B;  2HLQ A;  1FFJ A;  1RL5 A;  1LX5 B;  4QTI U;  1CXN A;  3FEV A;  2GOO B;  4UY2 C;  1CB9 A;  1CDQ A;  2CRS A;  2L03 A;  1KBA A;  2MHY A;  1FF4 A;  2H5F A;  1ZAD A;  3NH7 A;  1LJZ A;  2H7Z B;  2CDX A;  2I9B E;  1NTX A;  1PLO A;  2CTX A;  1KL8 A;  3KFD I;  1KU6 B;  4OM4 A;  5DO6 A;  5DZ5 A;  2N99 A;  1M9Z A;  2LA1 A;  1IDG A;  1REW C;  1FAS A;  1V6P A;  1G6M A;  3BT1 U;  1KBS A;  2PJY B;  2H62 D;  1IQ9 A;  1LXH A;  3PLC A;  5IMT D;  1KFH A;  1KTZ B;  2H7Z A;  4HQP F;  1COD A;  1LSI A;  2CCX A;  2J8B A;  2OFS A;  2LCR A;  1YWH A;  2HLR A;  4BIK B;  2H64 C;  1CRF A;  1B41 B;  1TXA A;  1RGJ A;  2BTX A;  2VLW A;  1CDR A;  1XT3 A;  5EBX A;  1NXB A;  1TXB A;  2MJY A;  2QJ9 C;  2ABX A;  4P7U A;  1I02 A; 
#chains in the Genus database with same CATH homology
 4RUD A;  1HAA A;  1UG4 A;  2H62 C;  2MJ4 A;  3EBX A;  4AEA A;  2MFA A;  2UX2 A;  1KC4 A;  2L5S A;  3ERA A;  5DU1 A;  1KXI A;  2FD6 U;  2QJB C;  1CVO A;  4FAO E;  1NTN A;  1TFS A;  1NYU A;  1KBT A;  1ABT A;  1QKE A;  4BDT B;  3VTS A;  1CDS A;  1FSC A;  4IYE A;  3EVS C;  4DO8 A;  1QKD A;  2NBT A;  1CHV S;  2MUP A;  1NEA A;  1IDH A;  1F94 A;  1JGK A;  1NOR A;  3U74 U;  4ZQY A;  1CRE A;  4FAO C;  3U73 U;  1VB0 A;  4KSN A;  2H8U A;  4EY8 B;  1BXP A;  2X8B B;  1MAH F;  2ERA A;  2UWR A;  1FRA A;  1CXO A;  1LXG A;  2BHI A;  2JQP A;  4XJJ A;  2K3G A;  2CRT A;  3QB4 B;  1COE A;  1L4W A;  1IDI A;  1ERG A;  1QM7 A;  6EBX A;  3LAQ U;  1DRS A;  2H64 B;  1ERA A;  1MR6 A;  1CDT A;  1H0J A;  1NYS A;  1S4Y A;  1IDL A;  1HC9 B;  4OM5 A;  1KS6 A;  2GOO C;  2MJ0 A;  1CCQ A;  5IMY C;  1F8U B;  1TGX A;  3KFD E;  3HH7 A;  1IKC A;  3NDS A;  2JVE A;  1IJC A;  1HAJ A;  1BTE A;  1JE9 A;  3BT2 U;  1ONJ A;  1ES7 B;  2QC1 A;  1JBD A;  3NEQ A;  1W6B A;  1IK8 A;  2QJA C;  1HOY A;  1HC9 A;  4LFT A;  2MUO A;  1CTX A;  2PJY C;  1FSS B;  2HLQ A;  1FFJ A;  1RL5 A;  1LX5 B;  4QTI U;  1CXN A;  3FEV A;  2GOO B;  4UY2 C;  1CB9 A;  1CDQ A;  2CRS A;  2L03 A;  1KBA A;  2MHY A;  1FF4 A;  2H5F A;  1ZAD A;  3NH7 A;  1LJZ A;  2H7Z B;  2CDX A;  2I9B E;  1NTX A;  1PLO A;  2CTX A;  1KL8 A;  3KFD I;  1KU6 B;  4OM4 A;  5DO6 A;  5DZ5 A;  2N99 A;  1M9Z A;  2LA1 A;  1IDG A;  1REW C;  1FAS A;  1V6P A;  1G6M A;  3BT1 U;  1KBS A;  2PJY B;  2H62 D;  1IQ9 A;  1LXH A;  3PLC A;  5IMT D;  1KFH A;  1KTZ B;  2H7Z A;  4HQP F;  1COD A;  1LSI A;  2CCX A;  2J8B A;  2OFS A;  2LCR A;  1YWH A;  2HLR A;  4BIK B;  2H64 C;  1CRF A;  1B41 B;  1TXA A;  1RGJ A;  2BTX A;  2VLW A;  1CDR A;  1XT3 A;  5EBX A;  1NXB A;  1TXB A;  2MJY A;  2QJ9 C;  2ABX A;  4P7U A;  1I02 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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