3PLCA

Crystal structure of beta-cardiotoxin, a novel three-finger cardiotoxin from the venom of ophiophagus hannah
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
62
structure length
54
Chain Sequence
RKCLNTPLPLIYTTCPIGQDKCVKMTDVIRGCIDICPKSSADVEVLCCDTNKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Beta-cardiotoxin OH-27
publication title Crystal structure of Beta-Cardiotoxin, a novel three-finger cardiotoxin from the venom of Ophiophagus hannah
rcsb
total genus 8
structure length 54
sequence length 62
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-11-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3plcA00
1LSIA 4QTIU 4BIKB 2K3GA 2MUPA 2UWRA 2UX2A 1IKCA 4OM5A 1JGKA 2CRTA 4P7UA 3FEVA 2PJYC 4DO8A 1ES7B 1LJZA 2L5SA 4UY2C 1CXOA 1MAHF 1KBSA 1KS6A 1KBAA 3PLCA 1KBTA 2H8UA 2BHIA 1CCQA 5DU1A 1RL5A 1REWC 1HC9A 2QC1A 1QKDA 2QJ9C 3QB4B 5IMTD 2ABXA 1IK8A 3KFDE 1YWHA 1CVOA 1IDGA 2I9BE 1IJCA 1HAAA 4EY8B 1S4YA 1KL8A 2JQPA 1TXBA 1QKEA 1CTXA 5IMYC 1FFJA 1IQ9A 1CDTA 1RGJA 3LAQU 2QJAC 1V6PA 1MR6A 1XT3A 3U74U 1CHVS 1CREA 1F94A 1KC4A 2CTXA 1NTXA 1BTEA 2CDXA 1CDSA 1CB9A 1M9ZA 3EBXA 1CODA 1CDQA 2OFSA 3NDSA 1NXBA 1TGXA 1CXNA 1CRFA 4IYEA 1W6BA 1FSCA 1IDHA 2MJYA 2MHYA 1G6MA 1TFSA 5DZ5A 3BT1U 4OM4A 1IDIA 2L03A 1KTZB 2GOOB 1HOYA 1UG4A 2H7ZB 2CCXA 1DRSA 1NYUA 1NYSA 1I02A 4FAOC 2H62C 1TXAA 6EBXA 1ABTA 2MJ4A 2FD6U 1B41B 1FSSB 2H5FA 4FAOE 1LXGA 3HH7A 1ZADA 2N99A 2VLWA 2MFAA 1LX5B 2H64B 1VB0A 2MUOA 1KFHA 4RUDA 2JVEA 2HLQA 5DO6A 2H62D 1KXIA 1HC9B 1FRAA 2LCRA 1NTNA 4HQPF 4AEAA 2BTXA 2GOOC 4XJJA 1CDRA 3NEQA 3U73U 2QJBC 1NORA 1COEA 4BDTB 1PLOA 1L4WA 1QM7A 1NEAA 2X8BB 2HLRA 4LFTA 2ERAA 2PJYB 3VTSA 2LA1A 2CRSA 3ERAA 1H0JA 1ERGA 1KU6B 1HAJA 1F8UB 3BT2U 3EVSC 2H64C 1LXHA 1FF4A 3NH7A 1ERAA 4ZQYA 1JBDA 1BXPA 2J8BA 5EBXA 1ONJA 1JE9A 1IDLA 2NBTA 1FASA 2MJ0A 2H7ZA 3KFDI
chains in the Genus database with same CATH superfamily
1LSIA 4QTIU 4BIKB 2K3GA 2MUPA 2UWRA 2UX2A 1IKCA 4OM5A 1JGKA 2CRTA 4P7UA 3FEVA 2PJYC 4DO8A 1ES7B 1LJZA 2L5SA 4UY2C 1CXOA 1MAHF 1KBSA 1KS6A 1KBAA 3PLCA 1KBTA 2H8UA 2BHIA 1CCQA 5DU1A 1RL5A 1REWC 1HC9A 2QC1A 1QKDA 2QJ9C 3QB4B 5IMTD 2ABXA 1IK8A 3KFDE 1YWHA 1CVOA 1IDGA 2I9BE 1IJCA 1HAAA 4EY8B 1S4YA 1KL8A 2JQPA 1TXBA 1QKEA 1CTXA 5IMYC 1FFJA 1IQ9A 1CDTA 1RGJA 3LAQU 2QJAC 1V6PA 1MR6A 1XT3A 3U74U 1CHVS 1CREA 1F94A 1KC4A 2CTXA 1NTXA 1BTEA 2CDXA 1CDSA 1CB9A 1M9ZA 3EBXA 1CODA 1CDQA 2OFSA 3NDSA 1NXBA 1TGXA 1CXNA 1CRFA 4IYEA 1W6BA 1FSCA 1IDHA 2MJYA 2MHYA 1G6MA 1TFSA 5DZ5A 3BT1U 4OM4A 1IDIA 2L03A 1KTZB 2GOOB 1HOYA 1UG4A 2H7ZB 2CCXA 1DRSA 1NYUA 1NYSA 1I02A 4FAOC 2H62C 1TXAA 6EBXA 1ABTA 2MJ4A 2FD6U 1B41B 1FSSB 2H5FA 4FAOE 1LXGA 3HH7A 1ZADA 2N99A 2VLWA 2MFAA 1LX5B 2H64B 1VB0A 2MUOA 1KFHA 4RUDA 2JVEA 2HLQA 5DO6A 2H62D 1KXIA 1HC9B 1FRAA 2LCRA 1NTNA 4HQPF 4AEAA 2BTXA 2GOOC 4XJJA 1CDRA 3NEQA 3U73U 2QJBC 1NORA 1COEA 4BDTB 1PLOA 1L4WA 1QM7A 1NEAA 2X8BB 2HLRA 4LFTA 2ERAA 2PJYB 3VTSA 2LA1A 4KSNA 2CRSA 3ERAA 1H0JA 1ERGA 1KU6B 1HAJA 1F8UB 3BT2U 3EVSC 2H64C 1LXHA 1FF4A 3NH7A 1ERAA 4ZQYA 1JBDA 1BXPA 2J8BA 5EBXA 1ONJA 1JE9A 1IDLA 2NBTA 1FASA 2MJ0A 2H7ZA 3KFDI
chains in the Genus database with same CATH topology
1LSIA 4QTIU 4BIKB 2K3GA 2MUPA 2UWRA 2UX2A 1IKCA 4OM5A 1JGKA 2CRTA 4P7UA 3FEVA 2PJYC 4DO8A 1ES7B 1LJZA 2L5SA 4UY2C 1CXOA 1MAHF 1KBSA 1KS6A 1KBAA 3PLCA 1KBTA 2H8UA 2BHIA 1CCQA 5DU1A 1RL5A 1REWC 1HC9A 2QC1A 1QKDA 2QJ9C 3QB4B 5IMTD 2ABXA 1IK8A 3KFDE 1YWHA 1CVOA 1IDGA 2I9BE 1IJCA 1HAAA 4EY8B 1S4YA 1KL8A 2JQPA 1TXBA 1QKEA 1CTXA 5IMYC 1FFJA 1IQ9A 1CDTA 1RGJA 3LAQU 2QJAC 1V6PA 1MR6A 1XT3A 3U74U 1CHVS 1CREA 1F94A 1KC4A 2CTXA 1NTXA 1BTEA 2CDXA 1CDSA 1CB9A 1M9ZA 3EBXA 1CODA 1CDQA 2OFSA 3NDSA 1NXBA 1TGXA 1CXNA 1CRFA 4IYEA 1W6BA 1FSCA 1IDHA 2MJYA 2MHYA 1G6MA 1TFSA 5DZ5A 3BT1U 4OM4A 1IDIA 2L03A 1KTZB 2GOOB 1HOYA 1UG4A 2H7ZB 2CCXA 1DRSA 1NYUA 1NYSA 1I02A 4FAOC 2H62C 1TXAA 6EBXA 1ABTA 2MJ4A 2FD6U 1B41B 1FSSB 2H5FA 4FAOE 1LXGA 3HH7A 1ZADA 2N99A 2VLWA 2MFAA 1LX5B 2H64B 1VB0A 2MUOA 1KFHA 4RUDA 2JVEA 2HLQA 5DO6A 2H62D 1KXIA 1HC9B 1FRAA 2LCRA 1NTNA 4HQPF 4AEAA 2BTXA 2GOOC 4XJJA 1CDRA 3NEQA 3U73U 2QJBC 1NORA 1COEA 4BDTB 1PLOA 1L4WA 1QM7A 1NEAA 2X8BB 2HLRA 4LFTA 2ERAA 2PJYB 3VTSA 2LA1A 4KSNA 2CRSA 3ERAA 1H0JA 1ERGA 1KU6B 1HAJA 1F8UB 3BT2U 3EVSC 2H64C 1LXHA 1FF4A 3NH7A 1ERAA 4ZQYA 1JBDA 1BXPA 2J8BA 5EBXA 1ONJA 1JE9A 1IDLA 2NBTA 1FASA 2MJ0A 2H7ZA 3KFDI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LSI A;  4QTI U;  4BIK B;  2K3G A;  2MUP A;  2UWR A;  2UX2 A;  1IKC A;  4OM5 A;  1JGK A;  2CRT A;  4P7U A;  3FEV A;  2PJY C;  4DO8 A;  1ES7 B;  1LJZ A;  2L5S A;  4UY2 C;  1CXO A;  1MAH F;  1KBS A;  1KS6 A;  1KBA A;  3PLC A;  1KBT A;  2H8U A;  2BHI A;  1CCQ A;  5DU1 A;  1RL5 A;  1REW C;  1HC9 A;  2QC1 A;  1QKD A;  2QJ9 C;  3QB4 B;  5IMT D;  2ABX A;  1IK8 A;  3KFD E;  1YWH A;  1CVO A;  1IDG A;  2I9B E;  1IJC A;  1HAA A;  4EY8 B;  1S4Y A;  1KL8 A;  2JQP A;  1TXB A;  1QKE A;  1CTX A;  5IMY C;  1FFJ A;  1IQ9 A;  1CDT A;  1RGJ A;  3LAQ U;  2QJA C;  1V6P A;  1MR6 A;  1XT3 A;  3U74 U;  1CHV S;  1CRE A;  1F94 A;  1KC4 A;  2CTX A;  1NTX A;  1BTE A;  2CDX A;  1CDS A;  1CB9 A;  1M9Z A;  3EBX A;  1COD A;  1CDQ A;  2OFS A;  3NDS A;  1NXB A;  1TGX A;  1CXN A;  1CRF A;  4IYE A;  1W6B A;  1FSC A;  1IDH A;  2MJY A;  2MHY A;  1G6M A;  1TFS A;  5DZ5 A;  3BT1 U;  4OM4 A;  1IDI A;  2L03 A;  1KTZ B;  2GOO B;  1HOY A;  1UG4 A;  2H7Z B;  2CCX A;  1DRS A;  1NYU A;  1NYS A;  1I02 A;  4FAO C;  2H62 C;  1TXA A;  6EBX A;  1ABT A;  2MJ4 A;  2FD6 U;  1B41 B;  1FSS B;  2H5F A;  4FAO E;  1LXG A;  3HH7 A;  1ZAD A;  2N99 A;  2VLW A;  2MFA A;  1LX5 B;  2H64 B;  1VB0 A;  2MUO A;  1KFH A;  4RUD A;  2JVE A;  2HLQ A;  5DO6 A;  2H62 D;  1KXI A;  1HC9 B;  1FRA A;  2LCR A;  1NTN A;  4HQP F;  4AEA A;  2BTX A;  2GOO C;  4XJJ A;  1CDR A;  3NEQ A;  3U73 U;  2QJB C;  1NOR A;  1COE A;  4BDT B;  1PLO A;  1L4W A;  1QM7 A;  1NEA A;  2X8B B;  2HLR A;  4LFT A;  2ERA A;  2PJY B;  3VTS A;  2LA1 A;  2CRS A;  3ERA A;  1H0J A;  1ERG A;  1KU6 B;  1HAJ A;  1F8U B;  3BT2 U;  3EVS C;  2H64 C;  1LXH A;  1FF4 A;  3NH7 A;  1ERA A;  4ZQY A;  1JBD A;  1BXP A;  2J8B A;  5EBX A;  1ONJ A;  1JE9 A;  1IDL A;  2NBT A;  1FAS A;  2MJ0 A;  2H7Z A;  3KFD I; 
#chains in the Genus database with same CATH topology
 1LSI A;  4QTI U;  4BIK B;  2K3G A;  2MUP A;  2UWR A;  2UX2 A;  1IKC A;  4OM5 A;  1JGK A;  2CRT A;  4P7U A;  3FEV A;  2PJY C;  4DO8 A;  1ES7 B;  1LJZ A;  2L5S A;  4UY2 C;  1CXO A;  1MAH F;  1KBS A;  1KS6 A;  1KBA A;  3PLC A;  1KBT A;  2H8U A;  2BHI A;  1CCQ A;  5DU1 A;  1RL5 A;  1REW C;  1HC9 A;  2QC1 A;  1QKD A;  2QJ9 C;  3QB4 B;  5IMT D;  2ABX A;  1IK8 A;  3KFD E;  1YWH A;  1CVO A;  1IDG A;  2I9B E;  1IJC A;  1HAA A;  4EY8 B;  1S4Y A;  1KL8 A;  2JQP A;  1TXB A;  1QKE A;  1CTX A;  5IMY C;  1FFJ A;  1IQ9 A;  1CDT A;  1RGJ A;  3LAQ U;  2QJA C;  1V6P A;  1MR6 A;  1XT3 A;  3U74 U;  1CHV S;  1CRE A;  1F94 A;  1KC4 A;  2CTX A;  1NTX A;  1BTE A;  2CDX A;  1CDS A;  1CB9 A;  1M9Z A;  3EBX A;  1COD A;  1CDQ A;  2OFS A;  3NDS A;  1NXB A;  1TGX A;  1CXN A;  1CRF A;  4IYE A;  1W6B A;  1FSC A;  1IDH A;  2MJY A;  2MHY A;  1G6M A;  1TFS A;  5DZ5 A;  3BT1 U;  4OM4 A;  1IDI A;  2L03 A;  1KTZ B;  2GOO B;  1HOY A;  1UG4 A;  2H7Z B;  2CCX A;  1DRS A;  1NYU A;  1NYS A;  1I02 A;  4FAO C;  2H62 C;  1TXA A;  6EBX A;  1ABT A;  2MJ4 A;  2FD6 U;  1B41 B;  1FSS B;  2H5F A;  4FAO E;  1LXG A;  3HH7 A;  1ZAD A;  2N99 A;  2VLW A;  2MFA A;  1LX5 B;  2H64 B;  1VB0 A;  2MUO A;  1KFH A;  4RUD A;  2JVE A;  2HLQ A;  5DO6 A;  2H62 D;  1KXI A;  1HC9 B;  1FRA A;  2LCR A;  1NTN A;  4HQP F;  4AEA A;  2BTX A;  2GOO C;  4XJJ A;  1CDR A;  3NEQ A;  3U73 U;  2QJB C;  1NOR A;  1COE A;  4BDT B;  1PLO A;  1L4W A;  1QM7 A;  1NEA A;  2X8B B;  2HLR A;  4LFT A;  2ERA A;  2PJY B;  3VTS A;  2LA1 A;  4KSN A;  2CRS A;  3ERA A;  1H0J A;  1ERG A;  1KU6 B;  1HAJ A;  1F8U B;  3BT2 U;  3EVS C;  2H64 C;  1LXH A;  1FF4 A;  3NH7 A;  1ERA A;  4ZQY A;  1JBD A;  1BXP A;  2J8B A;  5EBX A;  1ONJ A;  1JE9 A;  1IDL A;  2NBT A;  1FAS A;  2MJ0 A;  2H7Z A;  3KFD I; 
#chains in the Genus database with same CATH homology
 1LSI A;  4QTI U;  4BIK B;  2K3G A;  2MUP A;  2UWR A;  2UX2 A;  1IKC A;  4OM5 A;  1JGK A;  2CRT A;  4P7U A;  3FEV A;  2PJY C;  4DO8 A;  1ES7 B;  1LJZ A;  2L5S A;  4UY2 C;  1CXO A;  1MAH F;  1KBS A;  1KS6 A;  1KBA A;  3PLC A;  1KBT A;  2H8U A;  2BHI A;  1CCQ A;  5DU1 A;  1RL5 A;  1REW C;  1HC9 A;  2QC1 A;  1QKD A;  2QJ9 C;  3QB4 B;  5IMT D;  2ABX A;  1IK8 A;  3KFD E;  1YWH A;  1CVO A;  1IDG A;  2I9B E;  1IJC A;  1HAA A;  4EY8 B;  1S4Y A;  1KL8 A;  2JQP A;  1TXB A;  1QKE A;  1CTX A;  5IMY C;  1FFJ A;  1IQ9 A;  1CDT A;  1RGJ A;  3LAQ U;  2QJA C;  1V6P A;  1MR6 A;  1XT3 A;  3U74 U;  1CHV S;  1CRE A;  1F94 A;  1KC4 A;  2CTX A;  1NTX A;  1BTE A;  2CDX A;  1CDS A;  1CB9 A;  1M9Z A;  3EBX A;  1COD A;  1CDQ A;  2OFS A;  3NDS A;  1NXB A;  1TGX A;  1CXN A;  1CRF A;  4IYE A;  1W6B A;  1FSC A;  1IDH A;  2MJY A;  2MHY A;  1G6M A;  1TFS A;  5DZ5 A;  3BT1 U;  4OM4 A;  1IDI A;  2L03 A;  1KTZ B;  2GOO B;  1HOY A;  1UG4 A;  2H7Z B;  2CCX A;  1DRS A;  1NYU A;  1NYS A;  1I02 A;  4FAO C;  2H62 C;  1TXA A;  6EBX A;  1ABT A;  2MJ4 A;  2FD6 U;  1B41 B;  1FSS B;  2H5F A;  4FAO E;  1LXG A;  3HH7 A;  1ZAD A;  2N99 A;  2VLW A;  2MFA A;  1LX5 B;  2H64 B;  1VB0 A;  2MUO A;  1KFH A;  4RUD A;  2JVE A;  2HLQ A;  5DO6 A;  2H62 D;  1KXI A;  1HC9 B;  1FRA A;  2LCR A;  1NTN A;  4HQP F;  4AEA A;  2BTX A;  2GOO C;  4XJJ A;  1CDR A;  3NEQ A;  3U73 U;  2QJB C;  1NOR A;  1COE A;  4BDT B;  1PLO A;  1L4W A;  1QM7 A;  1NEA A;  2X8B B;  2HLR A;  4LFT A;  2ERA A;  2PJY B;  3VTS A;  2LA1 A;  4KSN A;  2CRS A;  3ERA A;  1H0J A;  1ERG A;  1KU6 B;  1HAJ A;  1F8U B;  3BT2 U;  3EVS C;  2H64 C;  1LXH A;  1FF4 A;  3NH7 A;  1ERA A;  4ZQY A;  1JBD A;  1BXP A;  2J8B A;  5EBX A;  1ONJ A;  1JE9 A;  1IDL A;  2NBT A;  1FAS A;  2MJ0 A;  2H7Z A;  3KFD I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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