1LSIA

Lsiii (nmr, 23 structures)
Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
66
structure length
66
Chain Sequence
RECYLNPHDTQTCPSGQEICYVKSWCNAWCSSRGKVLEFGCAATCPSVNTGTEIKCCSADKCNTYP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (19-25)TIV1 (1-4)TIV9 (58-61)S2 (36-42)O1 (3-20)TIV3 (5-8)TIV6 (30-33)O4 (45-56)S3 (53-57)TIV10 (59-62)TIV5 (27-30)TIV11 (61-64)Updating...
connected with : NaN
molecule tags Neurotoxin
publication title Solution structure of LSIII, a long neurotoxin from the venom of Laticauda semifasciata.
pubmed doi rcsb
molecule keywords LSIII
total genus 6
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 1995-11-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1lsiA00
1QKDA 2LCRA 3QB4B 1CDTA 1NORA 1B41B 1KBTA 1V6PA 2X8BB 1LXGA 1TGXA 1CODA 3HH7A 1HC9A 2H62C 1F8UB 1S4YA 1HC9B 1COEA 1XT3A 1UG4A 1CTXA 1KTZB 2NBTA 5EBXA 3LAQU 5DO6A 2ABXA 1IK8A 2LA1A 1HAAA 2L03A 1L4WA 2PJYB 2QJAC 1CHVS 4HQPF 1NYSA 4LFTA 2H64C 1MAHF 3EBXA 2GOOC 1RGJA 3VTSA 2MUPA 1FSCA 3NH7A 1CDRA 1KFHA 1IDGA 1KS6A 3PLCA 4RUDA 2CTXA 1IJCA 1NXBA 1NYUA 2QJ9C 2UX2A 2VLWA 3NEQA 1KBAA 1LX5B 1VB0A 3BT2U 1YWHA 1CB9A 1G6MA 3FEVA 1CDQA 4ZQYA 1KBSA 1KU6B 1W6BA 2HLQA 2CDXA 2MUOA 6EBXA 2MHYA 1IKCA 1JE9A 2H7ZB 1ERAA 1CCQA 2MJ0A 2OFSA 3U73U 1TXBA 1RL5A 2MJYA 1QM7A 2MFAA 3ERAA 2H8UA 1BTEA 4FAOC 2H62D 1HAJA 1MR6A 1F94A 1FRAA 2MJ4A 2H5FA 1FSSB 1HOYA 1FASA 1ZADA 2QJBC 4BDTB 1I02A 2FD6U 2JVEA 4FAOE 1ONJA 1LJZA 1FF4A 3BT1U 1JBDA 4OM4A 2N99A 1CRFA 4XJJA 2JQPA 4P7UA 1CXNA 2QC1A 2H7ZA 4IYEA 1H0JA 5IMTD 2H64B 2K3GA 5IMYC 1ES7B 2I9BE 4DO8A 5DU1A 1KL8A 1CDSA 1ABTA 2GOOB 1IDLA 3KFDE 2J8BA 2BTXA 1LSIA 1CREA 2L5SA 1PLOA 5DZ5A 4OM5A 2PJYC 1QKEA 2BHIA 3U74U 1DRSA 1CXOA 1TXAA 4AEAA 1REWC 3NDSA 2ERAA 3KFDI 1FFJA 4BIKB 1TFSA 4EY8B 2UWRA 1NTNA 1LXHA 2CRTA 1NTXA 3EVSC 4UY2C 1CVOA 1IQ9A 2CCXA 1KXIA 2CRSA 1ERGA 1JGKA 1M9ZA 4QTIU 2HLRA 1BXPA 1KC4A 1IDIA 1IDHA 1NEAA
chains in the Genus database with same CATH superfamily
1QKDA 2LCRA 3QB4B 1CDTA 1NORA 1B41B 1KBTA 1V6PA 2X8BB 1LXGA 1TGXA 1CODA 3HH7A 1HC9A 2H62C 1F8UB 1S4YA 1HC9B 1COEA 1XT3A 1UG4A 1CTXA 1KTZB 2NBTA 5EBXA 3LAQU 5DO6A 2ABXA 1IK8A 2LA1A 1HAAA 2L03A 4KSNA 1L4WA 2PJYB 2QJAC 1CHVS 4HQPF 1NYSA 4LFTA 2H64C 1MAHF 3EBXA 2GOOC 1RGJA 3VTSA 2MUPA 1FSCA 3NH7A 1CDRA 1KFHA 1IDGA 1KS6A 3PLCA 4RUDA 2CTXA 1IJCA 1NXBA 1NYUA 2QJ9C 2UX2A 2VLWA 3NEQA 1KBAA 1LX5B 1VB0A 3BT2U 1YWHA 1CB9A 1G6MA 3FEVA 1CDQA 4ZQYA 1KBSA 1KU6B 1W6BA 2HLQA 2CDXA 2MUOA 6EBXA 2MHYA 1IKCA 1JE9A 2H7ZB 1ERAA 1CCQA 2MJ0A 2OFSA 3U73U 1TXBA 1RL5A 2MJYA 1QM7A 2MFAA 3ERAA 2H8UA 1BTEA 4FAOC 2H62D 1HAJA 1MR6A 1F94A 1FRAA 2MJ4A 2H5FA 1FSSB 1HOYA 1FASA 1ZADA 2QJBC 4BDTB 1I02A 2FD6U 2JVEA 4FAOE 1ONJA 1LJZA 1FF4A 3BT1U 1JBDA 4OM4A 2N99A 1CRFA 4XJJA 2JQPA 4P7UA 1CXNA 2QC1A 2H7ZA 4IYEA 1H0JA 5IMTD 2H64B 2K3GA 5IMYC 1ES7B 2I9BE 4DO8A 5DU1A 1KL8A 1CDSA 1ABTA 2GOOB 1IDLA 3KFDE 2J8BA 2BTXA 1LSIA 1CREA 2L5SA 1PLOA 5DZ5A 4OM5A 2PJYC 1QKEA 2BHIA 3U74U 1DRSA 1CXOA 1TXAA 4AEAA 1REWC 3NDSA 2ERAA 3KFDI 1FFJA 4BIKB 1TFSA 4EY8B 2UWRA 1NTNA 1LXHA 2CRTA 1NTXA 3EVSC 4UY2C 1CVOA 1IQ9A 2CCXA 1KXIA 2CRSA 1ERGA 1JGKA 1M9ZA 4QTIU 2HLRA 1BXPA 1KC4A 1IDIA 1IDHA 1NEAA
chains in the Genus database with same CATH topology
1QKDA 2LCRA 3QB4B 1CDTA 1NORA 1B41B 1KBTA 1V6PA 2X8BB 1LXGA 1TGXA 1CODA 3HH7A 1HC9A 2H62C 1F8UB 1S4YA 1HC9B 1COEA 1XT3A 1UG4A 1CTXA 1KTZB 2NBTA 5EBXA 3LAQU 5DO6A 2ABXA 1IK8A 2LA1A 1HAAA 2L03A 4KSNA 1L4WA 2PJYB 2QJAC 1CHVS 4HQPF 1NYSA 4LFTA 2H64C 1MAHF 3EBXA 2GOOC 1RGJA 3VTSA 2MUPA 1FSCA 3NH7A 1CDRA 1KFHA 1IDGA 1KS6A 3PLCA 4RUDA 2CTXA 1IJCA 1NXBA 1NYUA 2QJ9C 2UX2A 2VLWA 3NEQA 1KBAA 1LX5B 1VB0A 3BT2U 1YWHA 1CB9A 1G6MA 3FEVA 1CDQA 4ZQYA 1KBSA 1KU6B 1W6BA 2HLQA 2CDXA 2MUOA 6EBXA 2MHYA 1IKCA 1JE9A 2H7ZB 1ERAA 1CCQA 2MJ0A 2OFSA 3U73U 1TXBA 1RL5A 2MJYA 1QM7A 2MFAA 3ERAA 2H8UA 1BTEA 4FAOC 2H62D 1HAJA 1MR6A 1F94A 1FRAA 2MJ4A 2H5FA 1FSSB 1HOYA 1FASA 1ZADA 2QJBC 4BDTB 1I02A 2FD6U 2JVEA 4FAOE 1ONJA 1LJZA 1FF4A 3BT1U 1JBDA 4OM4A 2N99A 1CRFA 4XJJA 2JQPA 4P7UA 1CXNA 2QC1A 2H7ZA 4IYEA 1H0JA 5IMTD 2H64B 2K3GA 5IMYC 1ES7B 2I9BE 4DO8A 5DU1A 1KL8A 1CDSA 1ABTA 2GOOB 1IDLA 3KFDE 2J8BA 2BTXA 1LSIA 1CREA 2L5SA 1PLOA 5DZ5A 4OM5A 2PJYC 1QKEA 2BHIA 3U74U 1DRSA 1CXOA 1TXAA 4AEAA 1REWC 3NDSA 2ERAA 3KFDI 1FFJA 4BIKB 1TFSA 4EY8B 2UWRA 1NTNA 1LXHA 2CRTA 1NTXA 3EVSC 4UY2C 1CVOA 1IQ9A 2CCXA 1KXIA 2CRSA 1ERGA 1JGKA 1M9ZA 4QTIU 2HLRA 1BXPA 1KC4A 1IDIA 1IDHA 1NEAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QKD A;  2LCR A;  3QB4 B;  1CDT A;  1NOR A;  1B41 B;  1KBT A;  1V6P A;  2X8B B;  1LXG A;  1TGX A;  1COD A;  3HH7 A;  1HC9 A;  2H62 C;  1F8U B;  1S4Y A;  1HC9 B;  1COE A;  1XT3 A;  1UG4 A;  1CTX A;  1KTZ B;  2NBT A;  5EBX A;  3LAQ U;  5DO6 A;  2ABX A;  1IK8 A;  2LA1 A;  1HAA A;  2L03 A;  1L4W A;  2PJY B;  2QJA C;  1CHV S;  4HQP F;  1NYS A;  4LFT A;  2H64 C;  1MAH F;  3EBX A;  2GOO C;  1RGJ A;  3VTS A;  2MUP A;  1FSC A;  3NH7 A;  1CDR A;  1KFH A;  1IDG A;  1KS6 A;  3PLC A;  4RUD A;  2CTX A;  1IJC A;  1NXB A;  1NYU A;  2QJ9 C;  2UX2 A;  2VLW A;  3NEQ A;  1KBA A;  1LX5 B;  1VB0 A;  3BT2 U;  1YWH A;  1CB9 A;  1G6M A;  3FEV A;  1CDQ A;  4ZQY A;  1KBS A;  1KU6 B;  1W6B A;  2HLQ A;  2CDX A;  2MUO A;  6EBX A;  2MHY A;  1IKC A;  1JE9 A;  2H7Z B;  1ERA A;  1CCQ A;  2MJ0 A;  2OFS A;  3U73 U;  1TXB A;  1RL5 A;  2MJY A;  1QM7 A;  2MFA A;  3ERA A;  2H8U A;  1BTE A;  4FAO C;  2H62 D;  1HAJ A;  1MR6 A;  1F94 A;  1FRA A;  2MJ4 A;  2H5F A;  1FSS B;  1HOY A;  1FAS A;  1ZAD A;  2QJB C;  4BDT B;  1I02 A;  2FD6 U;  2JVE A;  4FAO E;  1ONJ A;  1LJZ A;  1FF4 A;  3BT1 U;  1JBD A;  4OM4 A;  2N99 A;  1CRF A;  4XJJ A;  2JQP A;  4P7U A;  1CXN A;  2QC1 A;  2H7Z A;  4IYE A;  1H0J A;  5IMT D;  2H64 B;  2K3G A;  5IMY C;  1ES7 B;  2I9B E;  4DO8 A;  5DU1 A;  1KL8 A;  1CDS A;  1ABT A;  2GOO B;  1IDL A;  3KFD E;  2J8B A;  2BTX A;  1LSI A;  1CRE A;  2L5S A;  1PLO A;  5DZ5 A;  4OM5 A;  2PJY C;  1QKE A;  2BHI A;  3U74 U;  1DRS A;  1CXO A;  1TXA A;  4AEA A;  1REW C;  3NDS A;  2ERA A;  3KFD I;  1FFJ A;  4BIK B;  1TFS A;  4EY8 B;  2UWR A;  1NTN A;  1LXH A;  2CRT A;  1NTX A;  3EVS C;  4UY2 C;  1CVO A;  1IQ9 A;  2CCX A;  1KXI A;  2CRS A;  1ERG A;  1JGK A;  1M9Z A;  4QTI U;  2HLR A;  1BXP A;  1KC4 A;  1IDI A;  1IDH A;  1NEA A; 
#chains in the Genus database with same CATH topology
 1QKD A;  2LCR A;  3QB4 B;  1CDT A;  1NOR A;  1B41 B;  1KBT A;  1V6P A;  2X8B B;  1LXG A;  1TGX A;  1COD A;  3HH7 A;  1HC9 A;  2H62 C;  1F8U B;  1S4Y A;  1HC9 B;  1COE A;  1XT3 A;  1UG4 A;  1CTX A;  1KTZ B;  2NBT A;  5EBX A;  3LAQ U;  5DO6 A;  2ABX A;  1IK8 A;  2LA1 A;  1HAA A;  2L03 A;  4KSN A;  1L4W A;  2PJY B;  2QJA C;  1CHV S;  4HQP F;  1NYS A;  4LFT A;  2H64 C;  1MAH F;  3EBX A;  2GOO C;  1RGJ A;  3VTS A;  2MUP A;  1FSC A;  3NH7 A;  1CDR A;  1KFH A;  1IDG A;  1KS6 A;  3PLC A;  4RUD A;  2CTX A;  1IJC A;  1NXB A;  1NYU A;  2QJ9 C;  2UX2 A;  2VLW A;  3NEQ A;  1KBA A;  1LX5 B;  1VB0 A;  3BT2 U;  1YWH A;  1CB9 A;  1G6M A;  3FEV A;  1CDQ A;  4ZQY A;  1KBS A;  1KU6 B;  1W6B A;  2HLQ A;  2CDX A;  2MUO A;  6EBX A;  2MHY A;  1IKC A;  1JE9 A;  2H7Z B;  1ERA A;  1CCQ A;  2MJ0 A;  2OFS A;  3U73 U;  1TXB A;  1RL5 A;  2MJY A;  1QM7 A;  2MFA A;  3ERA A;  2H8U A;  1BTE A;  4FAO C;  2H62 D;  1HAJ A;  1MR6 A;  1F94 A;  1FRA A;  2MJ4 A;  2H5F A;  1FSS B;  1HOY A;  1FAS A;  1ZAD A;  2QJB C;  4BDT B;  1I02 A;  2FD6 U;  2JVE A;  4FAO E;  1ONJ A;  1LJZ A;  1FF4 A;  3BT1 U;  1JBD A;  4OM4 A;  2N99 A;  1CRF A;  4XJJ A;  2JQP A;  4P7U A;  1CXN A;  2QC1 A;  2H7Z A;  4IYE A;  1H0J A;  5IMT D;  2H64 B;  2K3G A;  5IMY C;  1ES7 B;  2I9B E;  4DO8 A;  5DU1 A;  1KL8 A;  1CDS A;  1ABT A;  2GOO B;  1IDL A;  3KFD E;  2J8B A;  2BTX A;  1LSI A;  1CRE A;  2L5S A;  1PLO A;  5DZ5 A;  4OM5 A;  2PJY C;  1QKE A;  2BHI A;  3U74 U;  1DRS A;  1CXO A;  1TXA A;  4AEA A;  1REW C;  3NDS A;  2ERA A;  3KFD I;  1FFJ A;  4BIK B;  1TFS A;  4EY8 B;  2UWR A;  1NTN A;  1LXH A;  2CRT A;  1NTX A;  3EVS C;  4UY2 C;  1CVO A;  1IQ9 A;  2CCX A;  1KXI A;  2CRS A;  1ERG A;  1JGK A;  1M9Z A;  4QTI U;  2HLR A;  1BXP A;  1KC4 A;  1IDI A;  1IDH A;  1NEA A; 
#chains in the Genus database with same CATH homology
 1QKD A;  2LCR A;  3QB4 B;  1CDT A;  1NOR A;  1B41 B;  1KBT A;  1V6P A;  2X8B B;  1LXG A;  1TGX A;  1COD A;  3HH7 A;  1HC9 A;  2H62 C;  1F8U B;  1S4Y A;  1HC9 B;  1COE A;  1XT3 A;  1UG4 A;  1CTX A;  1KTZ B;  2NBT A;  5EBX A;  3LAQ U;  5DO6 A;  2ABX A;  1IK8 A;  2LA1 A;  1HAA A;  2L03 A;  4KSN A;  1L4W A;  2PJY B;  2QJA C;  1CHV S;  4HQP F;  1NYS A;  4LFT A;  2H64 C;  1MAH F;  3EBX A;  2GOO C;  1RGJ A;  3VTS A;  2MUP A;  1FSC A;  3NH7 A;  1CDR A;  1KFH A;  1IDG A;  1KS6 A;  3PLC A;  4RUD A;  2CTX A;  1IJC A;  1NXB A;  1NYU A;  2QJ9 C;  2UX2 A;  2VLW A;  3NEQ A;  1KBA A;  1LX5 B;  1VB0 A;  3BT2 U;  1YWH A;  1CB9 A;  1G6M A;  3FEV A;  1CDQ A;  4ZQY A;  1KBS A;  1KU6 B;  1W6B A;  2HLQ A;  2CDX A;  2MUO A;  6EBX A;  2MHY A;  1IKC A;  1JE9 A;  2H7Z B;  1ERA A;  1CCQ A;  2MJ0 A;  2OFS A;  3U73 U;  1TXB A;  1RL5 A;  2MJY A;  1QM7 A;  2MFA A;  3ERA A;  2H8U A;  1BTE A;  4FAO C;  2H62 D;  1HAJ A;  1MR6 A;  1F94 A;  1FRA A;  2MJ4 A;  2H5F A;  1FSS B;  1HOY A;  1FAS A;  1ZAD A;  2QJB C;  4BDT B;  1I02 A;  2FD6 U;  2JVE A;  4FAO E;  1ONJ A;  1LJZ A;  1FF4 A;  3BT1 U;  1JBD A;  4OM4 A;  2N99 A;  1CRF A;  4XJJ A;  2JQP A;  4P7U A;  1CXN A;  2QC1 A;  2H7Z A;  4IYE A;  1H0J A;  5IMT D;  2H64 B;  2K3G A;  5IMY C;  1ES7 B;  2I9B E;  4DO8 A;  5DU1 A;  1KL8 A;  1CDS A;  1ABT A;  2GOO B;  1IDL A;  3KFD E;  2J8B A;  2BTX A;  1LSI A;  1CRE A;  2L5S A;  1PLO A;  5DZ5 A;  4OM5 A;  2PJY C;  1QKE A;  2BHI A;  3U74 U;  1DRS A;  1CXO A;  1TXA A;  4AEA A;  1REW C;  3NDS A;  2ERA A;  3KFD I;  1FFJ A;  4BIK B;  1TFS A;  4EY8 B;  2UWR A;  1NTN A;  1LXH A;  2CRT A;  1NTX A;  3EVS C;  4UY2 C;  1CVO A;  1IQ9 A;  2CCX A;  1KXI A;  2CRS A;  1ERG A;  1JGK A;  1M9Z A;  4QTI U;  2HLR A;  1BXP A;  1KC4 A;  1IDI A;  1IDH A;  1NEA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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