2I9BE

Crystal structure of atf-urokinase receptor complex
Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
278
structure length
265
Chain Sequence
SLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCHQSLQCRSPEEQCLDVVTHWIQRPKDDRHLRGCGYLPGCPGSNGFHNQDTFHFLKCCQTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKQQSYMVRGCATASAHLGDAFSMNHIDVSCCTKSGCNHPDLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-7)TII1 (18-21)S3 (23-33)S4 (37-46)S2 (11-16)O4 (50-131)TI3 (75-78)TIV1 (33-36)TI2 (47-50)S5 (53-59)S17 (235-242)TVIII2 (141-144)TIV5 (131-139)S8 (98-99)S6 (62-71)TIV2 (59-62)TIV4 (99-102)TII2 (73-76)TVIII1 (89-92)S7 (94-96)S9 (112-114)TI5 (117-120)S13 (165-171)TI4 (100-103)O33 (115-147)TI6 (161-164)S10 (121-128)S16 (221-228)TII3 (173-176)S11 (143-149)S12 (155-160)TIV6 (150-153)TI8 (206-209)EMPTYTIV7 (152-155)TI7 (175-178)3H1 (184-186)TIV17 (254-257)TIV18 (258-261)TIV10 (202-205)TIV8 (200-203)S14 (189-196)TIV13 (230-233)O38 (215-241)S15 (211-216)TIV16 (252-255)TI9 (253-256)S18 (259-262)TIV15 (245-252)TII'1 (216-219)O36 (194-222)TIV14 (242-245)S19 (265-266)TI1 (7-10)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Structural basis of interaction between urokinase-type plasminogen activator and its receptor.
pubmed doi rcsb
molecule keywords Urokinase-type plasminogen activator
total genus 51
structure length 265
sequence length 278
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2006-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2i9bE01
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2i9bE03
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2i9bE02
3HH7A 2H8UA 1CODA 1HC9B 1ERGA 1FASA 1KXIA 1RL5A 2K3GA 2PJYC 1NEAA 1JBDA 1ERAA 2QC1A 3KFDI 2LA1A 2BTXA 1FSSB 2MFAA 1V6PA 1QKDA 1CDTA 2FD6U 3U74U 1VB0A 2QJBC 1L4WA 3FEVA 2VLWA 1KTZB 1CXOA 4EY8B 3LAQU 1CDSA 3BT1U 1LJZA 1ABTA 3KFDE 1HAJA 2H64C 1IJCA 4FAOE 1YWHA 1JE9A 1B41B 1KL8A 1ZADA 1CREA 2MHYA 1NXBA 2BHIA 2ERAA 2QJAC 2UX2A 1S4YA 1QM7A 4OM5A 4P7UA 1CXNA 1KBAA 1KU6B 1H0JA 2CRTA 1TGXA 4BDTB 1BTEA 5DZ5A 2MUPA 2OFSA 1CB9A 4QTIU 1LXHA 1FSCA 4BIKB 1FF4A 2H7ZA 2LCRA 1NTNA 4IYEA 2L5SA 1HOYA 1CDQA 2GOOC 3QB4B 2MUOA 1NORA 2NBTA 2ABXA 5DU1A 1I02A 2PJYB 1NYUA 3EBXA 2CTXA 1RGJA 5IMYC 3PLCA 1NTXA 3U73U 1DRSA 1LSIA 3NEQA 1JGKA 1IDIA 2QJ9C 2X8BB 1IDGA 1FRAA 2H5FA 3EVSC 1F94A 1HAAA 4RUDA 1IDLA 4ZQYA 1G6MA 1CTXA 5IMTD 4FAOC 1BXPA 1IQ9A 2H64B 1FFJA 4XJJA 1IKCA 1CDRA 2H7ZB 1KBSA 1CVOA 2H62D 3NH7A 6EBXA 2CCXA 1F8UB 1CRFA 1KC4A 1M9ZA 1HC9A 2N99A 1TXAA 2I9BE 1TFSA 2HLQA 3VTSA 1KBTA 1XT3A 2CRSA 4LFTA 2UWRA 1CCQA 1KFHA 2JVEA 1KS6A 4DO8A 1COEA 1REWC 2CDXA 4OM4A 1ONJA 1NYSA 1MR6A 3NDSA 1W6BA 1MAHF 1PLOA 2L03A 5EBXA 1ES7B 2JQPA 2MJ0A 1LX5B 2HLRA 2J8BA 2GOOB 2H62C 2MJYA 4HQPF 5DO6A 4AEAA 1IDHA 4UY2C 1UG4A 1QKEA 3ERAA 2MJ4A 1TXBA 1CHVS 1IK8A 3BT2U 1LXGA
chains in the Genus database with same CATH superfamily
3HH7A 2H8UA 1CODA 1HC9B 1ERGA 1FASA 1KXIA 1RL5A 2K3GA 2PJYC 1NEAA 1JBDA 1ERAA 2QC1A 3KFDI 2LA1A 2BTXA 1FSSB 2MFAA 1V6PA 1QKDA 1CDTA 2FD6U 3U74U 1VB0A 2QJBC 1L4WA 3FEVA 2VLWA 1KTZB 1CXOA 4EY8B 3LAQU 1CDSA 3BT1U 1LJZA 1ABTA 3KFDE 1HAJA 2H64C 1IJCA 4FAOE 1YWHA 1JE9A 1B41B 1KL8A 1ZADA 1CREA 2MHYA 1NXBA 2BHIA 2ERAA 2QJAC 2UX2A 1S4YA 1QM7A 4OM5A 4P7UA 1CXNA 1KBAA 1KU6B 4KSNA 1H0JA 2CRTA 1TGXA 4BDTB 1BTEA 5DZ5A 2MUPA 2OFSA 1CB9A 4QTIU 1LXHA 1FSCA 4BIKB 1FF4A 2H7ZA 2LCRA 1NTNA 4IYEA 2L5SA 1HOYA 1CDQA 2GOOC 3QB4B 2MUOA 1NORA 2NBTA 2ABXA 5DU1A 1I02A 2PJYB 1NYUA 3EBXA 2CTXA 1RGJA 5IMYC 3PLCA 1NTXA 3U73U 1DRSA 1LSIA 3NEQA 1JGKA 1IDIA 2QJ9C 2X8BB 1IDGA 1FRAA 2H5FA 3EVSC 1F94A 1HAAA 4RUDA 1IDLA 4ZQYA 1G6MA 1CTXA 5IMTD 4FAOC 1BXPA 1IQ9A 2H64B 1FFJA 4XJJA 1IKCA 1CDRA 2H7ZB 1KBSA 1CVOA 2H62D 3NH7A 6EBXA 2CCXA 1F8UB 1CRFA 1KC4A 1M9ZA 1HC9A 2N99A 1TXAA 2I9BE 1TFSA 2HLQA 3VTSA 1KBTA 1XT3A 2CRSA 4LFTA 2UWRA 1CCQA 1KFHA 2JVEA 1KS6A 4DO8A 1COEA 1REWC 2CDXA 4OM4A 1ONJA 1NYSA 1MR6A 3NDSA 1W6BA 1MAHF 1PLOA 2L03A 5EBXA 1ES7B 2JQPA 2MJ0A 1LX5B 2HLRA 2J8BA 2GOOB 2H62C 2MJYA 4HQPF 5DO6A 4AEAA 1IDHA 4UY2C 1UG4A 1QKEA 3ERAA 2MJ4A 1TXBA 1CHVS 1IK8A 3BT2U 1LXGA
chains in the Genus database with same CATH topology
3HH7A 2H8UA 1CODA 1HC9B 1ERGA 1FASA 1KXIA 1RL5A 2K3GA 2PJYC 1NEAA 1JBDA 1ERAA 2QC1A 3KFDI 2LA1A 2BTXA 1FSSB 2MFAA 1V6PA 1QKDA 1CDTA 2FD6U 3U74U 1VB0A 2QJBC 1L4WA 3FEVA 2VLWA 1KTZB 1CXOA 4EY8B 3LAQU 1CDSA 3BT1U 1LJZA 1ABTA 3KFDE 1HAJA 2H64C 1IJCA 4FAOE 1YWHA 1JE9A 1B41B 1KL8A 1ZADA 1CREA 2MHYA 1NXBA 2BHIA 2ERAA 2QJAC 2UX2A 1S4YA 1QM7A 4OM5A 4P7UA 1CXNA 1KBAA 1KU6B 4KSNA 1H0JA 2CRTA 1TGXA 4BDTB 1BTEA 5DZ5A 2MUPA 2OFSA 1CB9A 4QTIU 1LXHA 1FSCA 4BIKB 1FF4A 2H7ZA 2LCRA 1NTNA 4IYEA 2L5SA 1HOYA 1CDQA 2GOOC 3QB4B 2MUOA 1NORA 2NBTA 2ABXA 5DU1A 1I02A 2PJYB 1NYUA 3EBXA 2CTXA 1RGJA 5IMYC 3PLCA 1NTXA 3U73U 1DRSA 1LSIA 3NEQA 1JGKA 1IDIA 2QJ9C 2X8BB 1IDGA 1FRAA 2H5FA 3EVSC 1F94A 1HAAA 4RUDA 1IDLA 4ZQYA 1G6MA 1CTXA 5IMTD 4FAOC 1BXPA 1IQ9A 2H64B 1FFJA 4XJJA 1IKCA 1CDRA 2H7ZB 1KBSA 1CVOA 2H62D 3NH7A 6EBXA 2CCXA 1F8UB 1CRFA 1KC4A 1M9ZA 1HC9A 2N99A 1TXAA 2I9BE 1TFSA 2HLQA 3VTSA 1KBTA 1XT3A 2CRSA 4LFTA 2UWRA 1CCQA 1KFHA 2JVEA 1KS6A 4DO8A 1COEA 1REWC 2CDXA 4OM4A 1ONJA 1NYSA 1MR6A 3NDSA 1W6BA 1MAHF 1PLOA 2L03A 5EBXA 1ES7B 2JQPA 2MJ0A 1LX5B 2HLRA 2J8BA 2GOOB 2H62C 2MJYA 4HQPF 5DO6A 4AEAA 1IDHA 4UY2C 1UG4A 1QKEA 3ERAA 2MJ4A 1TXBA 1CHVS 1IK8A 3BT2U 1LXGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HH7 A;  2H8U A;  1COD A;  1HC9 B;  1ERG A;  1FAS A;  1KXI A;  1RL5 A;  2K3G A;  2PJY C;  1NEA A;  1JBD A;  1ERA A;  2QC1 A;  3KFD I;  2LA1 A;  2BTX A;  1FSS B;  2MFA A;  1V6P A;  1QKD A;  1CDT A;  2FD6 U;  3U74 U;  1VB0 A;  2QJB C;  1L4W A;  3FEV A;  2VLW A;  1KTZ B;  1CXO A;  4EY8 B;  3LAQ U;  1CDS A;  3BT1 U;  1LJZ A;  1ABT A;  3KFD E;  1HAJ A;  2H64 C;  1IJC A;  4FAO E;  1YWH A;  1JE9 A;  1B41 B;  1KL8 A;  1ZAD A;  1CRE A;  2MHY A;  1NXB A;  2BHI A;  2ERA A;  2QJA C;  2UX2 A;  1S4Y A;  1QM7 A;  4OM5 A;  4P7U A;  1CXN A;  1KBA A;  1KU6 B;  1H0J A;  2CRT A;  1TGX A;  4BDT B;  1BTE A;  5DZ5 A;  2MUP A;  2OFS A;  1CB9 A;  4QTI U;  1LXH A;  1FSC A;  4BIK B;  1FF4 A;  2H7Z A;  2LCR A;  1NTN A;  4IYE A;  2L5S A;  1HOY A;  1CDQ A;  2GOO C;  3QB4 B;  2MUO A;  1NOR A;  2NBT A;  2ABX A;  5DU1 A;  1I02 A;  2PJY B;  1NYU A;  3EBX A;  2CTX A;  1RGJ A;  5IMY C;  3PLC A;  1NTX A;  3U73 U;  1DRS A;  1LSI A;  3NEQ A;  1JGK A;  1IDI A;  2QJ9 C;  2X8B B;  1IDG A;  1FRA A;  2H5F A;  3EVS C;  1F94 A;  1HAA A;  4RUD A;  1IDL A;  4ZQY A;  1G6M A;  1CTX A;  5IMT D;  4FAO C;  1BXP A;  1IQ9 A;  2H64 B;  1FFJ A;  4XJJ A;  1IKC A;  1CDR A;  2H7Z B;  1KBS A;  1CVO A;  2H62 D;  3NH7 A;  6EBX A;  2CCX A;  1F8U B;  1CRF A;  1KC4 A;  1M9Z A;  1HC9 A;  2N99 A;  1TXA A;  2I9B E;  1TFS A;  2HLQ A;  3VTS A;  1KBT A;  1XT3 A;  2CRS A;  4LFT A;  2UWR A;  1CCQ A;  1KFH A;  2JVE A;  1KS6 A;  4DO8 A;  1COE A;  1REW C;  2CDX A;  4OM4 A;  1ONJ A;  1NYS A;  1MR6 A;  3NDS A;  1W6B A;  1MAH F;  1PLO A;  2L03 A;  5EBX A;  1ES7 B;  2JQP A;  2MJ0 A;  1LX5 B;  2HLR A;  2J8B A;  2GOO B;  2H62 C;  2MJY A;  4HQP F;  5DO6 A;  4AEA A;  1IDH A;  4UY2 C;  1UG4 A;  1QKE A;  3ERA A;  2MJ4 A;  1TXB A;  1CHV S;  1IK8 A;  3BT2 U;  1LXG A; 
#chains in the Genus database with same CATH topology
 3HH7 A;  2H8U A;  1COD A;  1HC9 B;  1ERG A;  1FAS A;  1KXI A;  1RL5 A;  2K3G A;  2PJY C;  1NEA A;  1JBD A;  1ERA A;  2QC1 A;  3KFD I;  2LA1 A;  2BTX A;  1FSS B;  2MFA A;  1V6P A;  1QKD A;  1CDT A;  2FD6 U;  3U74 U;  1VB0 A;  2QJB C;  1L4W A;  3FEV A;  2VLW A;  1KTZ B;  1CXO A;  4EY8 B;  3LAQ U;  1CDS A;  3BT1 U;  1LJZ A;  1ABT A;  3KFD E;  1HAJ A;  2H64 C;  1IJC A;  4FAO E;  1YWH A;  1JE9 A;  1B41 B;  1KL8 A;  1ZAD A;  1CRE A;  2MHY A;  1NXB A;  2BHI A;  2ERA A;  2QJA C;  2UX2 A;  1S4Y A;  1QM7 A;  4OM5 A;  4P7U A;  1CXN A;  1KBA A;  1KU6 B;  4KSN A;  1H0J A;  2CRT A;  1TGX A;  4BDT B;  1BTE A;  5DZ5 A;  2MUP A;  2OFS A;  1CB9 A;  4QTI U;  1LXH A;  1FSC A;  4BIK B;  1FF4 A;  2H7Z A;  2LCR A;  1NTN A;  4IYE A;  2L5S A;  1HOY A;  1CDQ A;  2GOO C;  3QB4 B;  2MUO A;  1NOR A;  2NBT A;  2ABX A;  5DU1 A;  1I02 A;  2PJY B;  1NYU A;  3EBX A;  2CTX A;  1RGJ A;  5IMY C;  3PLC A;  1NTX A;  3U73 U;  1DRS A;  1LSI A;  3NEQ A;  1JGK A;  1IDI A;  2QJ9 C;  2X8B B;  1IDG A;  1FRA A;  2H5F A;  3EVS C;  1F94 A;  1HAA A;  4RUD A;  1IDL A;  4ZQY A;  1G6M A;  1CTX A;  5IMT D;  4FAO C;  1BXP A;  1IQ9 A;  2H64 B;  1FFJ A;  4XJJ A;  1IKC A;  1CDR A;  2H7Z B;  1KBS A;  1CVO A;  2H62 D;  3NH7 A;  6EBX A;  2CCX A;  1F8U B;  1CRF A;  1KC4 A;  1M9Z A;  1HC9 A;  2N99 A;  1TXA A;  2I9B E;  1TFS A;  2HLQ A;  3VTS A;  1KBT A;  1XT3 A;  2CRS A;  4LFT A;  2UWR A;  1CCQ A;  1KFH A;  2JVE A;  1KS6 A;  4DO8 A;  1COE A;  1REW C;  2CDX A;  4OM4 A;  1ONJ A;  1NYS A;  1MR6 A;  3NDS A;  1W6B A;  1MAH F;  1PLO A;  2L03 A;  5EBX A;  1ES7 B;  2JQP A;  2MJ0 A;  1LX5 B;  2HLR A;  2J8B A;  2GOO B;  2H62 C;  2MJY A;  4HQP F;  5DO6 A;  4AEA A;  1IDH A;  4UY2 C;  1UG4 A;  1QKE A;  3ERA A;  2MJ4 A;  1TXB A;  1CHV S;  1IK8 A;  3BT2 U;  1LXG A; 
#chains in the Genus database with same CATH homology
 3HH7 A;  2H8U A;  1COD A;  1HC9 B;  1ERG A;  1FAS A;  1KXI A;  1RL5 A;  2K3G A;  2PJY C;  1NEA A;  1JBD A;  1ERA A;  2QC1 A;  3KFD I;  2LA1 A;  2BTX A;  1FSS B;  2MFA A;  1V6P A;  1QKD A;  1CDT A;  2FD6 U;  3U74 U;  1VB0 A;  2QJB C;  1L4W A;  3FEV A;  2VLW A;  1KTZ B;  1CXO A;  4EY8 B;  3LAQ U;  1CDS A;  3BT1 U;  1LJZ A;  1ABT A;  3KFD E;  1HAJ A;  2H64 C;  1IJC A;  4FAO E;  1YWH A;  1JE9 A;  1B41 B;  1KL8 A;  1ZAD A;  1CRE A;  2MHY A;  1NXB A;  2BHI A;  2ERA A;  2QJA C;  2UX2 A;  1S4Y A;  1QM7 A;  4OM5 A;  4P7U A;  1CXN A;  1KBA A;  1KU6 B;  4KSN A;  1H0J A;  2CRT A;  1TGX A;  4BDT B;  1BTE A;  5DZ5 A;  2MUP A;  2OFS A;  1CB9 A;  4QTI U;  1LXH A;  1FSC A;  4BIK B;  1FF4 A;  2H7Z A;  2LCR A;  1NTN A;  4IYE A;  2L5S A;  1HOY A;  1CDQ A;  2GOO C;  3QB4 B;  2MUO A;  1NOR A;  2NBT A;  2ABX A;  5DU1 A;  1I02 A;  2PJY B;  1NYU A;  3EBX A;  2CTX A;  1RGJ A;  5IMY C;  3PLC A;  1NTX A;  3U73 U;  1DRS A;  1LSI A;  3NEQ A;  1JGK A;  1IDI A;  2QJ9 C;  2X8B B;  1IDG A;  1FRA A;  2H5F A;  3EVS C;  1F94 A;  1HAA A;  4RUD A;  1IDL A;  4ZQY A;  1G6M A;  1CTX A;  5IMT D;  4FAO C;  1BXP A;  1IQ9 A;  2H64 B;  1FFJ A;  4XJJ A;  1IKC A;  1CDR A;  2H7Z B;  1KBS A;  1CVO A;  2H62 D;  3NH7 A;  6EBX A;  2CCX A;  1F8U B;  1CRF A;  1KC4 A;  1M9Z A;  1HC9 A;  2N99 A;  1TXA A;  2I9B E;  1TFS A;  2HLQ A;  3VTS A;  1KBT A;  1XT3 A;  2CRS A;  4LFT A;  2UWR A;  1CCQ A;  1KFH A;  2JVE A;  1KS6 A;  4DO8 A;  1COE A;  1REW C;  2CDX A;  4OM4 A;  1ONJ A;  1NYS A;  1MR6 A;  3NDS A;  1W6B A;  1MAH F;  1PLO A;  2L03 A;  5EBX A;  1ES7 B;  2JQP A;  2MJ0 A;  1LX5 B;  2HLR A;  2J8B A;  2GOO B;  2H62 C;  2MJY A;  4HQP F;  5DO6 A;  4AEA A;  1IDH A;  4UY2 C;  1UG4 A;  1QKE A;  3ERA A;  2MJ4 A;  1TXB A;  1CHV S;  1IK8 A;  3BT2 U;  1LXG A; 
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