The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
5
|
sequence length |
57
|
structure length |
57
|
Chain Sequence |
LQCNTLDGGTEECIPGIYNVCVHYKSEDEEYKSCGIQEECEDAEGATVLCCPEDLCN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Signaling protein
|
| molecule keywords |
Plethodontid modulating factor
|
| publication title |
Structural insights into the evolution of a sexy protein: novel topology and restricted backbone flexibility in a hypervariable pheromone from the red-legged salamander, Plethodon shermani.
pubmed doi rcsb |
| source organism |
Plethodon shermani
|
| total genus |
5
|
| structure length |
57
|
| sequence length |
57
|
| ec nomenclature | |
| pdb deposition date | 2013-12-05 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | CD59 | CD59 |
#chains in the Genus database with same CATH superfamily 1CVO A; 1MR6 A; 3FEV A; 3NEQ A; 1H0J A; 1JGK A; 1UG4 A; 2H62 C; 1FSC A; 1F8U B; 1JBD A; 1QKE A; 1TGX A; 1NYS A; 1L4W A; 1KBT A; 4RUD A; 1QKD A; 1VB0 A; 3ERA A; 3KFD E; 2H62 D; 4QTI U; 2CDX A; 1BTE A; 1CDT A; 1ERG A; 1KS6 A; 1LX5 B; 2H7Z B; 3BT2 U; 2H8U A; 4AEA A; 2QJ9 C; 2CRS A; 1LXH A; 1CXN A; 2HLR A; 1ES7 B; 1IKC A; 1HAA A; 4FAO C; 1HOY A; 4BDT B; 3EVS C; 1REW C; 1MAH F; 6EBX A; 1KU6 B; 1IK8 A; 1LXG A; 1NOR A; 1CDS A; 2MJ4 A; 4ZQY A; 2MFA A; 1IDG A; 4IYE A; 1CHV S; 4P7U A; 1LJZ A; 3NH7 A; 1CRF A; 4DO8 A; 1NEA A; 2MJ0 A; 1CB9 A; 3PLC A; 1RGJ A; 1BXP A; 1V6P A; 1W6B A; 1HC9 A; 2ABX A; 1IJC A; 1XT3 A; 2CRT A; 1FF4 A; 1FSS B; 2QC1 A; 4HQP F; 1ZAD A; 1ERA A; 1CDR A; 4BIK B; 1KBS A; 2MHY A; 1G6M A; 4LFT A; 1JE9 A; 2H5F A; 2GOO C; 3EBX A; 1YWH A; 2FD6 U; 2I9B E; 2UWR A; 5EBX A; 4FAO E; 2H64 C; 2N99 A; 2MJY A; 1CTX A; 2L03 A; 4EY8 B; 1COE A; 4OM5 A; 1FAS A; 3VTS A; 1FFJ A; 2HLQ A; 2PJY B; 2J8B A; 2LA1 A; 1NYU A; 1LSI A; 2H7Z A; 1KTZ B; 2OFS A; 1KL8 A; 2NBT A; 2MUO A; 4OM4 A; 1F94 A; 3LAQ U; 1CCQ A; 1CXO A; 2GOO B; 3KFD I; 2QJA C; 1S4Y A; 2L5S A; 1COD A; 2CTX A; 1IDI A; 3NDS A; 5DO6 A; 3QB4 B; 2CCX A; 2LCR A; 4XJJ A; 2JVE A; 1I02 A; 1KBA A; 3BT1 U; 1IQ9 A; 5IMY C; 2QJB C; 2UX2 A; 1TFS A; 2VLW A; 2X8B B; 1NXB A; 1TXB A; 5DZ5 A; 1M9Z A; 1CRE A; 5DU1 A; 1FRA A; 2K3G A; 1B41 B; 1CDQ A; 2BTX A; 1KFH A; 1DRS A; 3U73 U; 3HH7 A; 3U74 U; 1NTX A; 2PJY C; 1NTN A; 1HC9 B; 1RL5 A; 2MUP A; 1PLO A; 1QM7 A; 2BHI A; 5IMT D; 1KXI A; 1KC4 A; 1ABT A; 1TXA A; 2H64 B; 1HAJ A; 1IDL A; 1ONJ A; 1IDH A; 2JQP A; 4UY2 C; 2ERA A; #chains in the Genus database with same CATH topology 1CVO A; 1MR6 A; 3FEV A; 3NEQ A; 1H0J A; 1JGK A; 1UG4 A; 2H62 C; 1FSC A; 1F8U B; 1JBD A; 1QKE A; 1TGX A; 1NYS A; 1L4W A; 1KBT A; 4RUD A; 1QKD A; 1VB0 A; 3ERA A; 3KFD E; 2H62 D; 4QTI U; 2CDX A; 1BTE A; 1CDT A; 1ERG A; 1KS6 A; 1LX5 B; 2H7Z B; 3BT2 U; 2H8U A; 4AEA A; 2QJ9 C; 2CRS A; 1LXH A; 1CXN A; 2HLR A; 1ES7 B; 1IKC A; 1HAA A; 4FAO C; 1HOY A; 4BDT B; 3EVS C; 1REW C; 1MAH F; 6EBX A; 1KU6 B; 1IK8 A; 1LXG A; 1NOR A; 1CDS A; 2MJ4 A; 4ZQY A; 2MFA A; 1IDG A; 4IYE A; 1CHV S; 4P7U A; 1LJZ A; 3NH7 A; 1CRF A; 4DO8 A; 1NEA A; 2MJ0 A; 1CB9 A; 3PLC A; 1RGJ A; 1BXP A; 1V6P A; 1W6B A; 1HC9 A; 2ABX A; 1IJC A; 1XT3 A; 2CRT A; 1FF4 A; 1FSS B; 2QC1 A; 4HQP F; 1ZAD A; 1ERA A; 1CDR A; 4BIK B; 1KBS A; 2MHY A; 1G6M A; 4LFT A; 1JE9 A; 2H5F A; 2GOO C; 3EBX A; 1YWH A; 2FD6 U; 2I9B E; 2UWR A; 5EBX A; 4FAO E; 2H64 C; 2N99 A; 2MJY A; 1CTX A; 2L03 A; 4EY8 B; 1COE A; 4OM5 A; 1FAS A; 3VTS A; 1FFJ A; 2HLQ A; 2PJY B; 2J8B A; 2LA1 A; 1NYU A; 1LSI A; 2H7Z A; 1KTZ B; 2OFS A; 1KL8 A; 2NBT A; 2MUO A; 4OM4 A; 1F94 A; 3LAQ U; 1CCQ A; 1CXO A; 2GOO B; 3KFD I; 2QJA C; 1S4Y A; 2L5S A; 1COD A; 2CTX A; 1IDI A; 3NDS A; 5DO6 A; 3QB4 B; 2CCX A; 2LCR A; 4XJJ A; 2JVE A; 1I02 A; 1KBA A; 3BT1 U; 1IQ9 A; 5IMY C; 4KSN A; 2QJB C; 2UX2 A; 1TFS A; 2VLW A; 2X8B B; 1NXB A; 1TXB A; 5DZ5 A; 1M9Z A; 1CRE A; 5DU1 A; 1FRA A; 2K3G A; 1B41 B; 1CDQ A; 2BTX A; 1KFH A; 1DRS A; 3U73 U; 3HH7 A; 3U74 U; 1NTX A; 2PJY C; 1NTN A; 1HC9 B; 1RL5 A; 2MUP A; 1PLO A; 1QM7 A; 2BHI A; 5IMT D; 1KXI A; 1KC4 A; 1ABT A; 1TXA A; 2H64 B; 1HAJ A; 1IDL A; 1ONJ A; 1IDH A; 2JQP A; 4UY2 C; 2ERA A; #chains in the Genus database with same CATH homology 1CVO A; 1MR6 A; 3FEV A; 3NEQ A; 1H0J A; 1JGK A; 1UG4 A; 2H62 C; 1FSC A; 1F8U B; 1JBD A; 1QKE A; 1TGX A; 1NYS A; 1L4W A; 1KBT A; 4RUD A; 1QKD A; 1VB0 A; 3ERA A; 3KFD E; 2H62 D; 4QTI U; 2CDX A; 1BTE A; 1CDT A; 1ERG A; 1KS6 A; 1LX5 B; 2H7Z B; 3BT2 U; 2H8U A; 4AEA A; 2QJ9 C; 2CRS A; 1LXH A; 1CXN A; 2HLR A; 1ES7 B; 1IKC A; 1HAA A; 4FAO C; 1HOY A; 4BDT B; 3EVS C; 1REW C; 1MAH F; 6EBX A; 1KU6 B; 1IK8 A; 1LXG A; 1NOR A; 1CDS A; 2MJ4 A; 4ZQY A; 2MFA A; 1IDG A; 4IYE A; 1CHV S; 4P7U A; 1LJZ A; 3NH7 A; 1CRF A; 4DO8 A; 1NEA A; 2MJ0 A; 1CB9 A; 3PLC A; 1RGJ A; 1BXP A; 1V6P A; 1W6B A; 1HC9 A; 2ABX A; 1IJC A; 1XT3 A; 2CRT A; 1FF4 A; 1FSS B; 2QC1 A; 4HQP F; 1ZAD A; 1ERA A; 1CDR A; 4BIK B; 1KBS A; 2MHY A; 1G6M A; 4LFT A; 1JE9 A; 2H5F A; 2GOO C; 3EBX A; 1YWH A; 2FD6 U; 2I9B E; 2UWR A; 5EBX A; 4FAO E; 2H64 C; 2N99 A; 2MJY A; 1CTX A; 2L03 A; 4EY8 B; 1COE A; 4OM5 A; 1FAS A; 3VTS A; 1FFJ A; 2HLQ A; 2PJY B; 2J8B A; 2LA1 A; 1NYU A; 1LSI A; 2H7Z A; 1KTZ B; 2OFS A; 1KL8 A; 2NBT A; 2MUO A; 4OM4 A; 1F94 A; 3LAQ U; 1CCQ A; 1CXO A; 2GOO B; 3KFD I; 2QJA C; 1S4Y A; 2L5S A; 1COD A; 2CTX A; 1IDI A; 3NDS A; 5DO6 A; 3QB4 B; 2CCX A; 2LCR A; 4XJJ A; 2JVE A; 1I02 A; 1KBA A; 3BT1 U; 1IQ9 A; 5IMY C; 4KSN A; 2QJB C; 2UX2 A; 1TFS A; 2VLW A; 2X8B B; 1NXB A; 1TXB A; 5DZ5 A; 1M9Z A; 1CRE A; 5DU1 A; 1FRA A; 2K3G A; 1B41 B; 1CDQ A; 2BTX A; 1KFH A; 1DRS A; 3U73 U; 3HH7 A; 3U74 U; 1NTX A; 2PJY C; 1NTN A; 1HC9 B; 1RL5 A; 2MUP A; 1PLO A; 1QM7 A; 2BHI A; 5IMT D; 1KXI A; 1KC4 A; 1ABT A; 1TXA A; 2H64 B; 1HAJ A; 1IDL A; 1ONJ A; 1IDH A; 2JQP A; 4UY2 C; 2ERA A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
