3BT1U

Structure of urokinase receptor, urokinase and vitronectin complex
Total Genus 64

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
275
structure length
273
Chain Sequence
LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGVTYSRSRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (15-18)S1 (2-6)S3 (23-33)TIV5 (75-78)S4 (36-46)TI1 (7-10)S2 (12-16)O4 (50-131)TI2 (47-50)AH1 (251-256)S10 (143-148)S5 (56-59)S7 (93-99)TII'1 (59-62)TIV4 (73-76)S8 (111-115)TIV6 (86-89)TI7 (117-120)TII1 (173-176)TI6 (105-108)TIV8 (103-106)TVIII1 (141-144)O19 (115-147)TI3 (99-102)TI4 (100-103)S9 (121-129)S11 (156-161)TI8 (175-178)S12 (164-171)TIV12 (150-153)TIV13 (153-156)TIV14 (161-164)O21 (171-176)S13 (189-196)TII'2 (216-219)O22 (194-222)O26 (266-271)TII2 (268-271)S16 (237-242)TVIII2 (200-203)O24 (215-241)3H1 (207-209)TIV17 (201-204)TIV19 (203-206)TIV18 (202-205)S14 (211-216)S15 (221-229)O25 (247-265)3H2 (244-247)S17 (258-266)O1 (11-19)TIV15 (183-186)S6 (62-71)TIV7 (88-91)TIV20 (229-232)Updating...
connected with : NaN
molecule tags Immune system
source organism Homo sapiens
publication title Crystal structures of two human vitronectin, urokinase and urokinase receptor complexes
pubmed doi rcsb
molecule keywords Urokinase-type plasminogen activator
total genus 64
structure length 273
sequence length 275
ec nomenclature
pdb deposition date 2007-12-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3bt1U01
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3bt1U03
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3bt1U02
3VTSA 1RL5A 1ERAA 1HAAA 1KXIA 4BDTB 4EY8B 1CXNA 5IMTD 2X8BB 2UX2A 2CRTA 6EBXA 1CCQA 1KBAA 1KBSA 2ABXA 1QKDA 2LCRA 2BTXA 1TXBA 4OM4A 1JGKA 1FSSB 3KFDI 2LA1A 4XJJA 1IDLA 2JQPA 3PLCA 1B41B 2VLWA 1FSCA 2MUPA 4DO8A 1IQ9A 1CTXA 1LXGA 1QM7A 2GOOC 3NH7A 5DU1A 1CRFA 2H62D 5DO6A 1HC9A 1ONJA 2N99A 1I02A 2H7ZA 1F8UB 4HQPF 1NTNA 3EVSC 1KC4A 2MJ4A 1CDTA 1REWC 2GOOB 4UY2C 4QTIU 1CODA 2OFSA 2MFAA 1CDRA 1LJZA 1F94A 1HOYA 2CCXA 1G6MA 1HC9B 1BXPA 1NTXA 1S4YA 1IK8A 1XT3A 1ABTA 2H5FA 2MJ0A 2CTXA 3LAQU 5IMYC 1NORA 1COEA 4LFTA 5EBXA 2PJYC 1IDHA 1JBDA 2ERAA 2FD6U 4ZQYA 2H62C 1VB0A 3U74U 1NEAA 2H64B 1IJCA 3ERAA 1FRAA 1ES7B 1LX5B 2MJYA 1NYUA 1CB9A 1CHVS 1CREA 2CDXA 2MHYA 3KFDE 1CDSA 1TGXA 4FAOE 4AEAA 4IYEA 1FASA 1PLOA 1ERGA 1L4WA 2PJYB 2QJBC 1CXOA 1FFJA 2I9BE 2JVEA 2L5SA 1KFHA 4OM5A 2H64C 1CDQA 1HAJA 3HH7A 1IDIA 1TFSA 1M9ZA 3QB4B 2H7ZB 1IDGA 2CRSA 2NBTA 1RGJA 2HLQA 1KTZB 1MR6A 1ZADA 2QC1A 3U73U 4BIKB 1FF4A 1CVOA 1MAHF 3EBXA 2H8UA 1KS6A 1KU6B 1LXHA 1NXBA 1BTEA 1V6PA 2HLRA 3BT2U 1TXAA 2UWRA 3NEQA 2BHIA 1H0JA 1W6BA 2QJAC 5DZ5A 2L03A 2MUOA 1LSIA 2K3GA 3FEVA 1NYSA 1JE9A 1KBTA 1QKEA 1KL8A 4RUDA 1DRSA 4FAOC 1UG4A 1YWHA 2J8BA 3NDSA 4P7UA 3BT1U 1IKCA 2QJ9C
chains in the Genus database with same CATH superfamily
3VTSA 1RL5A 1ERAA 1HAAA 1KXIA 4BDTB 4EY8B 1CXNA 5IMTD 2X8BB 2UX2A 2CRTA 6EBXA 1CCQA 1KBAA 1KBSA 2ABXA 1QKDA 2LCRA 2BTXA 1TXBA 4OM4A 1JGKA 1FSSB 3KFDI 2LA1A 4XJJA 1IDLA 2JQPA 3PLCA 1B41B 2VLWA 1FSCA 2MUPA 4DO8A 1IQ9A 1CTXA 1LXGA 1QM7A 2GOOC 3NH7A 5DU1A 1CRFA 2H62D 5DO6A 1HC9A 1ONJA 2N99A 1I02A 2H7ZA 1F8UB 4HQPF 1NTNA 3EVSC 1KC4A 2MJ4A 1CDTA 1REWC 2GOOB 4UY2C 4QTIU 1CODA 2OFSA 2MFAA 1CDRA 1LJZA 4KSNA 1F94A 1HOYA 2CCXA 1G6MA 1HC9B 1BXPA 1NTXA 1S4YA 1IK8A 1XT3A 1ABTA 2H5FA 2MJ0A 2CTXA 3LAQU 5IMYC 1NORA 1COEA 4LFTA 5EBXA 2PJYC 1IDHA 1JBDA 2ERAA 2FD6U 4ZQYA 2H62C 1VB0A 3U74U 1NEAA 2H64B 1IJCA 3ERAA 1FRAA 1ES7B 1LX5B 2MJYA 1NYUA 1CB9A 1CHVS 1CREA 2CDXA 2MHYA 3KFDE 1CDSA 1TGXA 4FAOE 4AEAA 4IYEA 1FASA 1PLOA 1ERGA 1L4WA 2PJYB 2QJBC 1CXOA 1FFJA 2I9BE 2JVEA 2L5SA 1KFHA 4OM5A 2H64C 1CDQA 1HAJA 3HH7A 1IDIA 1TFSA 1M9ZA 3QB4B 2H7ZB 1IDGA 2CRSA 2NBTA 1RGJA 2HLQA 1KTZB 1MR6A 1ZADA 2QC1A 3U73U 4BIKB 1FF4A 1CVOA 1MAHF 3EBXA 2H8UA 1KS6A 1KU6B 1LXHA 1NXBA 1BTEA 1V6PA 2HLRA 3BT2U 1TXAA 2UWRA 3NEQA 2BHIA 1H0JA 1W6BA 2QJAC 5DZ5A 2L03A 2MUOA 1LSIA 2K3GA 3FEVA 1NYSA 1JE9A 1KBTA 1QKEA 1KL8A 4RUDA 1DRSA 4FAOC 1UG4A 1YWHA 2J8BA 3NDSA 4P7UA 3BT1U 1IKCA 2QJ9C
chains in the Genus database with same CATH topology
3VTSA 1RL5A 1ERAA 1HAAA 1KXIA 4BDTB 4EY8B 1CXNA 5IMTD 2X8BB 2UX2A 2CRTA 6EBXA 1CCQA 1KBAA 1KBSA 2ABXA 1QKDA 2LCRA 2BTXA 1TXBA 4OM4A 1JGKA 1FSSB 3KFDI 2LA1A 4XJJA 1IDLA 2JQPA 3PLCA 1B41B 2VLWA 1FSCA 2MUPA 4DO8A 1IQ9A 1CTXA 1LXGA 1QM7A 2GOOC 3NH7A 5DU1A 1CRFA 2H62D 5DO6A 1HC9A 1ONJA 2N99A 1I02A 2H7ZA 1F8UB 4HQPF 1NTNA 3EVSC 1KC4A 2MJ4A 1CDTA 1REWC 2GOOB 4UY2C 4QTIU 1CODA 2OFSA 2MFAA 1CDRA 1LJZA 4KSNA 1F94A 1HOYA 2CCXA 1G6MA 1HC9B 1BXPA 1NTXA 1S4YA 1IK8A 1XT3A 1ABTA 2H5FA 2MJ0A 2CTXA 3LAQU 5IMYC 1NORA 1COEA 4LFTA 5EBXA 2PJYC 1IDHA 1JBDA 2ERAA 2FD6U 4ZQYA 2H62C 1VB0A 3U74U 1NEAA 2H64B 1IJCA 3ERAA 1FRAA 1ES7B 1LX5B 2MJYA 1NYUA 1CB9A 1CHVS 1CREA 2CDXA 2MHYA 3KFDE 1CDSA 1TGXA 4FAOE 4AEAA 4IYEA 1FASA 1PLOA 1ERGA 1L4WA 2PJYB 2QJBC 1CXOA 1FFJA 2I9BE 2JVEA 2L5SA 1KFHA 4OM5A 2H64C 1CDQA 1HAJA 3HH7A 1IDIA 1TFSA 1M9ZA 3QB4B 2H7ZB 1IDGA 2CRSA 2NBTA 1RGJA 2HLQA 1KTZB 1MR6A 1ZADA 2QC1A 3U73U 4BIKB 1FF4A 1CVOA 1MAHF 3EBXA 2H8UA 1KS6A 1KU6B 1LXHA 1NXBA 1BTEA 1V6PA 2HLRA 3BT2U 1TXAA 2UWRA 3NEQA 2BHIA 1H0JA 1W6BA 2QJAC 5DZ5A 2L03A 2MUOA 1LSIA 2K3GA 3FEVA 1NYSA 1JE9A 1KBTA 1QKEA 1KL8A 4RUDA 1DRSA 4FAOC 1UG4A 1YWHA 2J8BA 3NDSA 4P7UA 3BT1U 1IKCA 2QJ9C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VTS A;  1RL5 A;  1ERA A;  1HAA A;  1KXI A;  4BDT B;  4EY8 B;  1CXN A;  5IMT D;  2X8B B;  2UX2 A;  2CRT A;  6EBX A;  1CCQ A;  1KBA A;  1KBS A;  2ABX A;  1QKD A;  2LCR A;  2BTX A;  1TXB A;  4OM4 A;  1JGK A;  1FSS B;  3KFD I;  2LA1 A;  4XJJ A;  1IDL A;  2JQP A;  3PLC A;  1B41 B;  2VLW A;  1FSC A;  2MUP A;  4DO8 A;  1IQ9 A;  1CTX A;  1LXG A;  1QM7 A;  2GOO C;  3NH7 A;  5DU1 A;  1CRF A;  2H62 D;  5DO6 A;  1HC9 A;  1ONJ A;  2N99 A;  1I02 A;  2H7Z A;  1F8U B;  4HQP F;  1NTN A;  3EVS C;  1KC4 A;  2MJ4 A;  1CDT A;  1REW C;  2GOO B;  4UY2 C;  4QTI U;  1COD A;  2OFS A;  2MFA A;  1CDR A;  1LJZ A;  1F94 A;  1HOY A;  2CCX A;  1G6M A;  1HC9 B;  1BXP A;  1NTX A;  1S4Y A;  1IK8 A;  1XT3 A;  1ABT A;  2H5F A;  2MJ0 A;  2CTX A;  3LAQ U;  5IMY C;  1NOR A;  1COE A;  4LFT A;  5EBX A;  2PJY C;  1IDH A;  1JBD A;  2ERA A;  2FD6 U;  4ZQY A;  2H62 C;  1VB0 A;  3U74 U;  1NEA A;  2H64 B;  1IJC A;  3ERA A;  1FRA A;  1ES7 B;  1LX5 B;  2MJY A;  1NYU A;  1CB9 A;  1CHV S;  1CRE A;  2CDX A;  2MHY A;  3KFD E;  1CDS A;  1TGX A;  4FAO E;  4AEA A;  4IYE A;  1FAS A;  1PLO A;  1ERG A;  1L4W A;  2PJY B;  2QJB C;  1CXO A;  1FFJ A;  2I9B E;  2JVE A;  2L5S A;  1KFH A;  4OM5 A;  2H64 C;  1CDQ A;  1HAJ A;  3HH7 A;  1IDI A;  1TFS A;  1M9Z A;  3QB4 B;  2H7Z B;  1IDG A;  2CRS A;  2NBT A;  1RGJ A;  2HLQ A;  1KTZ B;  1MR6 A;  1ZAD A;  2QC1 A;  3U73 U;  4BIK B;  1FF4 A;  1CVO A;  1MAH F;  3EBX A;  2H8U A;  1KS6 A;  1KU6 B;  1LXH A;  1NXB A;  1BTE A;  1V6P A;  2HLR A;  3BT2 U;  1TXA A;  2UWR A;  3NEQ A;  2BHI A;  1H0J A;  1W6B A;  2QJA C;  5DZ5 A;  2L03 A;  2MUO A;  1LSI A;  2K3G A;  3FEV A;  1NYS A;  1JE9 A;  1KBT A;  1QKE A;  1KL8 A;  4RUD A;  1DRS A;  4FAO C;  1UG4 A;  1YWH A;  2J8B A;  3NDS A;  4P7U A;  3BT1 U;  1IKC A;  2QJ9 C; 
#chains in the Genus database with same CATH topology
 3VTS A;  1RL5 A;  1ERA A;  1HAA A;  1KXI A;  4BDT B;  4EY8 B;  1CXN A;  5IMT D;  2X8B B;  2UX2 A;  2CRT A;  6EBX A;  1CCQ A;  1KBA A;  1KBS A;  2ABX A;  1QKD A;  2LCR A;  2BTX A;  1TXB A;  4OM4 A;  1JGK A;  1FSS B;  3KFD I;  2LA1 A;  4XJJ A;  1IDL A;  2JQP A;  3PLC A;  1B41 B;  2VLW A;  1FSC A;  2MUP A;  4DO8 A;  1IQ9 A;  1CTX A;  1LXG A;  1QM7 A;  2GOO C;  3NH7 A;  5DU1 A;  1CRF A;  2H62 D;  5DO6 A;  1HC9 A;  1ONJ A;  2N99 A;  1I02 A;  2H7Z A;  1F8U B;  4HQP F;  1NTN A;  3EVS C;  1KC4 A;  2MJ4 A;  1CDT A;  1REW C;  2GOO B;  4UY2 C;  4QTI U;  1COD A;  2OFS A;  2MFA A;  1CDR A;  1LJZ A;  4KSN A;  1F94 A;  1HOY A;  2CCX A;  1G6M A;  1HC9 B;  1BXP A;  1NTX A;  1S4Y A;  1IK8 A;  1XT3 A;  1ABT A;  2H5F A;  2MJ0 A;  2CTX A;  3LAQ U;  5IMY C;  1NOR A;  1COE A;  4LFT A;  5EBX A;  2PJY C;  1IDH A;  1JBD A;  2ERA A;  2FD6 U;  4ZQY A;  2H62 C;  1VB0 A;  3U74 U;  1NEA A;  2H64 B;  1IJC A;  3ERA A;  1FRA A;  1ES7 B;  1LX5 B;  2MJY A;  1NYU A;  1CB9 A;  1CHV S;  1CRE A;  2CDX A;  2MHY A;  3KFD E;  1CDS A;  1TGX A;  4FAO E;  4AEA A;  4IYE A;  1FAS A;  1PLO A;  1ERG A;  1L4W A;  2PJY B;  2QJB C;  1CXO A;  1FFJ A;  2I9B E;  2JVE A;  2L5S A;  1KFH A;  4OM5 A;  2H64 C;  1CDQ A;  1HAJ A;  3HH7 A;  1IDI A;  1TFS A;  1M9Z A;  3QB4 B;  2H7Z B;  1IDG A;  2CRS A;  2NBT A;  1RGJ A;  2HLQ A;  1KTZ B;  1MR6 A;  1ZAD A;  2QC1 A;  3U73 U;  4BIK B;  1FF4 A;  1CVO A;  1MAH F;  3EBX A;  2H8U A;  1KS6 A;  1KU6 B;  1LXH A;  1NXB A;  1BTE A;  1V6P A;  2HLR A;  3BT2 U;  1TXA A;  2UWR A;  3NEQ A;  2BHI A;  1H0J A;  1W6B A;  2QJA C;  5DZ5 A;  2L03 A;  2MUO A;  1LSI A;  2K3G A;  3FEV A;  1NYS A;  1JE9 A;  1KBT A;  1QKE A;  1KL8 A;  4RUD A;  1DRS A;  4FAO C;  1UG4 A;  1YWH A;  2J8B A;  3NDS A;  4P7U A;  3BT1 U;  1IKC A;  2QJ9 C; 
#chains in the Genus database with same CATH homology
 3VTS A;  1RL5 A;  1ERA A;  1HAA A;  1KXI A;  4BDT B;  4EY8 B;  1CXN A;  5IMT D;  2X8B B;  2UX2 A;  2CRT A;  6EBX A;  1CCQ A;  1KBA A;  1KBS A;  2ABX A;  1QKD A;  2LCR A;  2BTX A;  1TXB A;  4OM4 A;  1JGK A;  1FSS B;  3KFD I;  2LA1 A;  4XJJ A;  1IDL A;  2JQP A;  3PLC A;  1B41 B;  2VLW A;  1FSC A;  2MUP A;  4DO8 A;  1IQ9 A;  1CTX A;  1LXG A;  1QM7 A;  2GOO C;  3NH7 A;  5DU1 A;  1CRF A;  2H62 D;  5DO6 A;  1HC9 A;  1ONJ A;  2N99 A;  1I02 A;  2H7Z A;  1F8U B;  4HQP F;  1NTN A;  3EVS C;  1KC4 A;  2MJ4 A;  1CDT A;  1REW C;  2GOO B;  4UY2 C;  4QTI U;  1COD A;  2OFS A;  2MFA A;  1CDR A;  1LJZ A;  4KSN A;  1F94 A;  1HOY A;  2CCX A;  1G6M A;  1HC9 B;  1BXP A;  1NTX A;  1S4Y A;  1IK8 A;  1XT3 A;  1ABT A;  2H5F A;  2MJ0 A;  2CTX A;  3LAQ U;  5IMY C;  1NOR A;  1COE A;  4LFT A;  5EBX A;  2PJY C;  1IDH A;  1JBD A;  2ERA A;  2FD6 U;  4ZQY A;  2H62 C;  1VB0 A;  3U74 U;  1NEA A;  2H64 B;  1IJC A;  3ERA A;  1FRA A;  1ES7 B;  1LX5 B;  2MJY A;  1NYU A;  1CB9 A;  1CHV S;  1CRE A;  2CDX A;  2MHY A;  3KFD E;  1CDS A;  1TGX A;  4FAO E;  4AEA A;  4IYE A;  1FAS A;  1PLO A;  1ERG A;  1L4W A;  2PJY B;  2QJB C;  1CXO A;  1FFJ A;  2I9B E;  2JVE A;  2L5S A;  1KFH A;  4OM5 A;  2H64 C;  1CDQ A;  1HAJ A;  3HH7 A;  1IDI A;  1TFS A;  1M9Z A;  3QB4 B;  2H7Z B;  1IDG A;  2CRS A;  2NBT A;  1RGJ A;  2HLQ A;  1KTZ B;  1MR6 A;  1ZAD A;  2QC1 A;  3U73 U;  4BIK B;  1FF4 A;  1CVO A;  1MAH F;  3EBX A;  2H8U A;  1KS6 A;  1KU6 B;  1LXH A;  1NXB A;  1BTE A;  1V6P A;  2HLR A;  3BT2 U;  1TXA A;  2UWR A;  3NEQ A;  2BHI A;  1H0J A;  1W6B A;  2QJA C;  5DZ5 A;  2L03 A;  2MUO A;  1LSI A;  2K3G A;  3FEV A;  1NYS A;  1JE9 A;  1KBT A;  1QKE A;  1KL8 A;  4RUD A;  1DRS A;  4FAO C;  1UG4 A;  1YWH A;  2J8B A;  3NDS A;  4P7U A;  3BT1 U;  1IKC A;  2QJ9 C; 
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similar chains in the Genus database (?% sequence similarity)
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