3KFDE

Ternary complex of tgf-b1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
108
structure length
108
Chain Sequence
AVKFPQLCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPKCIMKEKKKPGETFFMCSCSSDECNDNIIFSE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (32-35)O1 (7-16)TIV2 (41-44)S1 (27-29)TIV1 (31-34)S9 (101-102)S4 (51-53)O2 (15-78)O3 (44-109)TI1 (56-59)TI4 (92-95)TVIII1 (54-57)S3 (43-44)TI3 (90-93)S8 (88-89)S5 (60-67)TIV3 (68-71)S6 (72-79)TII2 (105-108)TI2 (80-83)Updating...
connected with : NaN
molecule tags Cytokine/cytokine receptor
source organism Homo sapiens
publication title Ternary complex of transforming growth factor-beta1 reveals isoform-specific ligand recognition and receptor recruitment in the superfamily.
pubmed doi rcsb
molecule keywords Transforming growth factor beta-1
total genus 18
structure length 108
sequence length 108
chains with identical sequence F, G, H
ec nomenclature ec 2.7.11.30: Receptor protein serine/threonine kinase.
pdb deposition date 2009-10-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3kfdE00
1FF4A 3NEQA 4XJJA 2VLWA 3HH7A 1IDHA 3EBXA 5EBXA 2FD6U 1ZADA 1HAAA 2X8BB 2NBTA 2L5SA 1COEA 1FFJA 4LFTA 1IDIA 2GOOC 2MUOA 4OM4A 1CTXA 2H5FA 1BTEA 2ABXA 1XT3A 2CDXA 1CB9A 2H64B 3EVSC 1B41B 2H7ZB 2QC1A 1BXPA 2QJ9C 1PLOA 1KBTA 1NYSA 4AEAA 2OFSA 3ERAA 2H64C 3U74U 1HC9A 2QJAC 3PLCA 4FAOE 1CDQA 4BDTB 1MR6A 4UY2C 1KBSA 1UG4A 2N99A 3QB4B 1NYUA 4ZQYA 4DO8A 4FAOC 1REWC 2BHIA 2JVEA 1TGXA 1KXIA 1DRSA 1IDGA 5IMTD 3FEVA 2GOOB 3NH7A 1CDSA 2HLQA 4HQPF 2ERAA 2HLRA 4RUDA 5DZ5A 1IKCA 1V6PA 1CDTA 1KTZB 1RL5A 4EY8B 1QKDA 2MJ4A 1NEAA 2L03A 2CCXA 1ES7B 1ERAA 1ONJA 1TFSA 2BTXA 2H7ZA 1CXOA 5DU1A 1CHVS 2MHYA 6EBXA 1I02A 1IQ9A 3LAQU 1M9ZA 1FASA 1CCQA 1NTXA 1TXAA 2H62D 2UX2A 1HAJA 1CXNA 1LXHA 1S4YA 3U73U 1G6MA 1CVOA 2PJYB 2QJBC 2LA1A 1IK8A 2JQPA 1F8UB 2MJYA 1FRAA 1TXBA 2CRTA 4IYEA 2J8BA 2PJYC 5IMYC 1IJCA 3VTSA 1QM7A 1CDRA 1RGJA 1VB0A 5DO6A 4P7UA 2H62C 4QTIU 4BIKB 1LX5B 1JE9A 1FSCA 2I9BE 2UWRA 3BT2U 1NTNA 1JGKA 1L4WA 2K3GA 1KU6B 1NXBA 2H8UA 3KFDI 3BT1U 1KC4A 2CTXA 1JBDA 1CREA 2MFAA 2MUPA 1KFHA 1LJZA 1KL8A 1LXGA 1HC9B 1F94A 1YWHA 1HOYA 4OM5A 2CRSA 1KS6A 3KFDE 1KBAA 1CODA 2MJ0A 2LCRA 1CRFA 1MAHF 1ERGA 1FSSB 1H0JA 1IDLA 1ABTA 1LSIA 1W6BA 3NDSA 1QKEA 1NORA
chains in the Genus database with same CATH superfamily
1FF4A 3NEQA 4XJJA 2VLWA 3HH7A 1IDHA 3EBXA 5EBXA 2FD6U 1ZADA 1HAAA 2X8BB 2NBTA 2L5SA 1COEA 1FFJA 4LFTA 1IDIA 2GOOC 2MUOA 4OM4A 1CTXA 2H5FA 1BTEA 2ABXA 1XT3A 2CDXA 1CB9A 2H64B 3EVSC 1B41B 2H7ZB 2QC1A 1BXPA 2QJ9C 1PLOA 1KBTA 1NYSA 4AEAA 2OFSA 3ERAA 2H64C 3U74U 1HC9A 2QJAC 3PLCA 4FAOE 1CDQA 4BDTB 1MR6A 4UY2C 1KBSA 1UG4A 2N99A 3QB4B 1NYUA 4ZQYA 4DO8A 4FAOC 1REWC 2BHIA 2JVEA 1TGXA 1KXIA 4KSNA 1IDGA 1DRSA 5IMTD 3FEVA 2GOOB 3NH7A 1CDSA 2HLQA 4HQPF 2ERAA 2HLRA 4RUDA 5DZ5A 1IKCA 1V6PA 1CDTA 1KTZB 1RL5A 4EY8B 1QKDA 2MJ4A 1NEAA 2L03A 2CCXA 1ES7B 1ERAA 1ONJA 1TFSA 2BTXA 2H7ZA 1CXOA 5DU1A 1CHVS 2MHYA 6EBXA 1I02A 1IQ9A 3LAQU 1M9ZA 1FASA 1CCQA 1NTXA 1TXAA 2H62D 2UX2A 1HAJA 1CXNA 1LXHA 1S4YA 3U73U 1G6MA 1CVOA 2PJYB 2QJBC 2LA1A 1IK8A 2JQPA 1F8UB 2MJYA 1FRAA 1TXBA 2CRTA 4IYEA 2J8BA 2PJYC 5IMYC 1IJCA 3VTSA 1QM7A 1CDRA 1RGJA 1VB0A 5DO6A 4P7UA 2H62C 4QTIU 4BIKB 1LX5B 1JE9A 1FSCA 2I9BE 2UWRA 3BT2U 1NTNA 1JGKA 1L4WA 2K3GA 1KU6B 1NXBA 2H8UA 3KFDI 3BT1U 1KC4A 2CTXA 1JBDA 1CREA 2MFAA 2MUPA 1KFHA 1LJZA 1KL8A 1LXGA 1HC9B 1F94A 1YWHA 1HOYA 4OM5A 2CRSA 1KS6A 3KFDE 1KBAA 1CODA 2MJ0A 2LCRA 1CRFA 1MAHF 1ERGA 1FSSB 1H0JA 1IDLA 1ABTA 1LSIA 1W6BA 3NDSA 1QKEA 1NORA
chains in the Genus database with same CATH topology
1FF4A 3NEQA 4XJJA 2VLWA 3HH7A 1IDHA 3EBXA 5EBXA 2FD6U 1ZADA 1HAAA 2X8BB 2NBTA 2L5SA 1COEA 1FFJA 4LFTA 1IDIA 2GOOC 2MUOA 4OM4A 1CTXA 2H5FA 1BTEA 2ABXA 1XT3A 2CDXA 1CB9A 2H64B 3EVSC 1B41B 2H7ZB 2QC1A 1BXPA 2QJ9C 1PLOA 1KBTA 1NYSA 4AEAA 2OFSA 3ERAA 2H64C 3U74U 1HC9A 2QJAC 3PLCA 4FAOE 1CDQA 4BDTB 1MR6A 4UY2C 1KBSA 1UG4A 2N99A 3QB4B 1NYUA 4ZQYA 4DO8A 4FAOC 1REWC 2BHIA 2JVEA 1TGXA 1KXIA 4KSNA 1IDGA 1DRSA 5IMTD 3FEVA 2GOOB 3NH7A 1CDSA 2HLQA 4HQPF 2ERAA 2HLRA 4RUDA 5DZ5A 1IKCA 1V6PA 1CDTA 1KTZB 1RL5A 4EY8B 1QKDA 2MJ4A 1NEAA 2L03A 2CCXA 1ES7B 1ERAA 1ONJA 1TFSA 2BTXA 2H7ZA 1CXOA 5DU1A 1CHVS 2MHYA 6EBXA 1I02A 1IQ9A 3LAQU 1M9ZA 1FASA 1CCQA 1NTXA 1TXAA 2H62D 2UX2A 1HAJA 1CXNA 1LXHA 1S4YA 3U73U 1G6MA 1CVOA 2PJYB 2QJBC 2LA1A 1IK8A 2JQPA 1F8UB 2MJYA 1FRAA 1TXBA 2CRTA 4IYEA 2J8BA 2PJYC 5IMYC 1IJCA 3VTSA 1QM7A 1CDRA 1RGJA 1VB0A 5DO6A 4P7UA 2H62C 4QTIU 4BIKB 1LX5B 1JE9A 1FSCA 2I9BE 2UWRA 3BT2U 1NTNA 1JGKA 1L4WA 2K3GA 1KU6B 1NXBA 2H8UA 3KFDI 3BT1U 1KC4A 2CTXA 1JBDA 1CREA 2MFAA 2MUPA 1KFHA 1LJZA 1KL8A 1LXGA 1HC9B 1F94A 1YWHA 1HOYA 4OM5A 2CRSA 1KS6A 3KFDE 1KBAA 1CODA 2MJ0A 2LCRA 1CRFA 1MAHF 1ERGA 1FSSB 1H0JA 1IDLA 1ABTA 1LSIA 1W6BA 3NDSA 1QKEA 1NORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FF4 A;  3NEQ A;  4XJJ A;  2VLW A;  3HH7 A;  1IDH A;  3EBX A;  5EBX A;  2FD6 U;  1ZAD A;  1HAA A;  2X8B B;  2NBT A;  2L5S A;  1COE A;  1FFJ A;  4LFT A;  1IDI A;  2GOO C;  2MUO A;  4OM4 A;  1CTX A;  2H5F A;  1BTE A;  2ABX A;  1XT3 A;  2CDX A;  1CB9 A;  2H64 B;  3EVS C;  1B41 B;  2H7Z B;  2QC1 A;  1BXP A;  2QJ9 C;  1PLO A;  1KBT A;  1NYS A;  4AEA A;  2OFS A;  3ERA A;  2H64 C;  3U74 U;  1HC9 A;  2QJA C;  3PLC A;  4FAO E;  1CDQ A;  4BDT B;  1MR6 A;  4UY2 C;  1KBS A;  1UG4 A;  2N99 A;  3QB4 B;  1NYU A;  4ZQY A;  4DO8 A;  4FAO C;  1REW C;  2BHI A;  2JVE A;  1TGX A;  1KXI A;  1DRS A;  1IDG A;  5IMT D;  3FEV A;  2GOO B;  3NH7 A;  1CDS A;  2HLQ A;  4HQP F;  2ERA A;  2HLR A;  4RUD A;  5DZ5 A;  1IKC A;  1V6P A;  1CDT A;  1KTZ B;  1RL5 A;  4EY8 B;  1QKD A;  2MJ4 A;  1NEA A;  2L03 A;  2CCX A;  1ES7 B;  1ERA A;  1ONJ A;  1TFS A;  2BTX A;  2H7Z A;  1CXO A;  5DU1 A;  1CHV S;  2MHY A;  6EBX A;  1I02 A;  1IQ9 A;  3LAQ U;  1M9Z A;  1FAS A;  1CCQ A;  1NTX A;  1TXA A;  2H62 D;  2UX2 A;  1HAJ A;  1CXN A;  1LXH A;  1S4Y A;  3U73 U;  1G6M A;  1CVO A;  2PJY B;  2QJB C;  2LA1 A;  1IK8 A;  2JQP A;  1F8U B;  2MJY A;  1FRA A;  1TXB A;  2CRT A;  4IYE A;  2J8B A;  2PJY C;  5IMY C;  1IJC A;  3VTS A;  1QM7 A;  1CDR A;  1RGJ A;  1VB0 A;  5DO6 A;  4P7U A;  2H62 C;  4QTI U;  4BIK B;  1LX5 B;  1JE9 A;  1FSC A;  2I9B E;  2UWR A;  3BT2 U;  1NTN A;  1JGK A;  1L4W A;  2K3G A;  1KU6 B;  1NXB A;  2H8U A;  3KFD I;  3BT1 U;  1KC4 A;  2CTX A;  1JBD A;  1CRE A;  2MFA A;  2MUP A;  1KFH A;  1LJZ A;  1KL8 A;  1LXG A;  1HC9 B;  1F94 A;  1YWH A;  1HOY A;  4OM5 A;  2CRS A;  1KS6 A;  3KFD E;  1KBA A;  1COD A;  2MJ0 A;  2LCR A;  1CRF A;  1MAH F;  1ERG A;  1FSS B;  1H0J A;  1IDL A;  1ABT A;  1LSI A;  1W6B A;  3NDS A;  1QKE A;  1NOR A; 
#chains in the Genus database with same CATH topology
 1FF4 A;  3NEQ A;  4XJJ A;  2VLW A;  3HH7 A;  1IDH A;  3EBX A;  5EBX A;  2FD6 U;  1ZAD A;  1HAA A;  2X8B B;  2NBT A;  2L5S A;  1COE A;  1FFJ A;  4LFT A;  1IDI A;  2GOO C;  2MUO A;  4OM4 A;  1CTX A;  2H5F A;  1BTE A;  2ABX A;  1XT3 A;  2CDX A;  1CB9 A;  2H64 B;  3EVS C;  1B41 B;  2H7Z B;  2QC1 A;  1BXP A;  2QJ9 C;  1PLO A;  1KBT A;  1NYS A;  4AEA A;  2OFS A;  3ERA A;  2H64 C;  3U74 U;  1HC9 A;  2QJA C;  3PLC A;  4FAO E;  1CDQ A;  4BDT B;  1MR6 A;  4UY2 C;  1KBS A;  1UG4 A;  2N99 A;  3QB4 B;  1NYU A;  4ZQY A;  4DO8 A;  4FAO C;  1REW C;  2BHI A;  2JVE A;  1TGX A;  1KXI A;  4KSN A;  1IDG A;  1DRS A;  5IMT D;  3FEV A;  2GOO B;  3NH7 A;  1CDS A;  2HLQ A;  4HQP F;  2ERA A;  2HLR A;  4RUD A;  5DZ5 A;  1IKC A;  1V6P A;  1CDT A;  1KTZ B;  1RL5 A;  4EY8 B;  1QKD A;  2MJ4 A;  1NEA A;  2L03 A;  2CCX A;  1ES7 B;  1ERA A;  1ONJ A;  1TFS A;  2BTX A;  2H7Z A;  1CXO A;  5DU1 A;  1CHV S;  2MHY A;  6EBX A;  1I02 A;  1IQ9 A;  3LAQ U;  1M9Z A;  1FAS A;  1CCQ A;  1NTX A;  1TXA A;  2H62 D;  2UX2 A;  1HAJ A;  1CXN A;  1LXH A;  1S4Y A;  3U73 U;  1G6M A;  1CVO A;  2PJY B;  2QJB C;  2LA1 A;  1IK8 A;  2JQP A;  1F8U B;  2MJY A;  1FRA A;  1TXB A;  2CRT A;  4IYE A;  2J8B A;  2PJY C;  5IMY C;  1IJC A;  3VTS A;  1QM7 A;  1CDR A;  1RGJ A;  1VB0 A;  5DO6 A;  4P7U A;  2H62 C;  4QTI U;  4BIK B;  1LX5 B;  1JE9 A;  1FSC A;  2I9B E;  2UWR A;  3BT2 U;  1NTN A;  1JGK A;  1L4W A;  2K3G A;  1KU6 B;  1NXB A;  2H8U A;  3KFD I;  3BT1 U;  1KC4 A;  2CTX A;  1JBD A;  1CRE A;  2MFA A;  2MUP A;  1KFH A;  1LJZ A;  1KL8 A;  1LXG A;  1HC9 B;  1F94 A;  1YWH A;  1HOY A;  4OM5 A;  2CRS A;  1KS6 A;  3KFD E;  1KBA A;  1COD A;  2MJ0 A;  2LCR A;  1CRF A;  1MAH F;  1ERG A;  1FSS B;  1H0J A;  1IDL A;  1ABT A;  1LSI A;  1W6B A;  3NDS A;  1QKE A;  1NOR A; 
#chains in the Genus database with same CATH homology
 1FF4 A;  3NEQ A;  4XJJ A;  2VLW A;  3HH7 A;  1IDH A;  3EBX A;  5EBX A;  2FD6 U;  1ZAD A;  1HAA A;  2X8B B;  2NBT A;  2L5S A;  1COE A;  1FFJ A;  4LFT A;  1IDI A;  2GOO C;  2MUO A;  4OM4 A;  1CTX A;  2H5F A;  1BTE A;  2ABX A;  1XT3 A;  2CDX A;  1CB9 A;  2H64 B;  3EVS C;  1B41 B;  2H7Z B;  2QC1 A;  1BXP A;  2QJ9 C;  1PLO A;  1KBT A;  1NYS A;  4AEA A;  2OFS A;  3ERA A;  2H64 C;  3U74 U;  1HC9 A;  2QJA C;  3PLC A;  4FAO E;  1CDQ A;  4BDT B;  1MR6 A;  4UY2 C;  1KBS A;  1UG4 A;  2N99 A;  3QB4 B;  1NYU A;  4ZQY A;  4DO8 A;  4FAO C;  1REW C;  2BHI A;  2JVE A;  1TGX A;  1KXI A;  4KSN A;  1IDG A;  1DRS A;  5IMT D;  3FEV A;  2GOO B;  3NH7 A;  1CDS A;  2HLQ A;  4HQP F;  2ERA A;  2HLR A;  4RUD A;  5DZ5 A;  1IKC A;  1V6P A;  1CDT A;  1KTZ B;  1RL5 A;  4EY8 B;  1QKD A;  2MJ4 A;  1NEA A;  2L03 A;  2CCX A;  1ES7 B;  1ERA A;  1ONJ A;  1TFS A;  2BTX A;  2H7Z A;  1CXO A;  5DU1 A;  1CHV S;  2MHY A;  6EBX A;  1I02 A;  1IQ9 A;  3LAQ U;  1M9Z A;  1FAS A;  1CCQ A;  1NTX A;  1TXA A;  2H62 D;  2UX2 A;  1HAJ A;  1CXN A;  1LXH A;  1S4Y A;  3U73 U;  1G6M A;  1CVO A;  2PJY B;  2QJB C;  2LA1 A;  1IK8 A;  2JQP A;  1F8U B;  2MJY A;  1FRA A;  1TXB A;  2CRT A;  4IYE A;  2J8B A;  2PJY C;  5IMY C;  1IJC A;  3VTS A;  1QM7 A;  1CDR A;  1RGJ A;  1VB0 A;  5DO6 A;  4P7U A;  2H62 C;  4QTI U;  4BIK B;  1LX5 B;  1JE9 A;  1FSC A;  2I9B E;  2UWR A;  3BT2 U;  1NTN A;  1JGK A;  1L4W A;  2K3G A;  1KU6 B;  1NXB A;  2H8U A;  3KFD I;  3BT1 U;  1KC4 A;  2CTX A;  1JBD A;  1CRE A;  2MFA A;  2MUP A;  1KFH A;  1LJZ A;  1KL8 A;  1LXG A;  1HC9 B;  1F94 A;  1YWH A;  1HOY A;  4OM5 A;  2CRS A;  1KS6 A;  3KFD E;  1KBA A;  1COD A;  2MJ0 A;  2LCR A;  1CRF A;  1MAH F;  1ERG A;  1FSS B;  1H0J A;  1IDL A;  1ABT A;  1LSI A;  1W6B A;  3NDS A;  1QKE A;  1NOR A; 
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similar chains in the Genus database (?% sequence similarity)
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