The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
74
|
sequence length |
249
|
structure length |
249
|
Chain Sequence |
MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADAAAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQEQVASE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Visualizing an Ultra-Weak Protein-Protein Interaction in Phosphorylation Signaling
doi rcsb |
| molecule keywords |
Phosphoenolpyruvate-protein phosphotransferase
|
| molecule tags |
Transferase
|
| source organism |
Escherichia coli
|
| total genus |
74
|
| structure length |
249
|
| sequence length |
249
|
| ec nomenclature |
ec
2.7.3.9: Phosphoenolpyruvate--protein phosphotransferase. |
| pdb deposition date | 2014-05-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00391 | PEP-utilizers | PEP-utilising enzyme, mobile domain |
| A | PF05524 | PEP-utilisers_N | PEP-utilising enzyme, N-terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Enzyme I; Chain A, domain 2 | PtsI, HPr-binding domain | ||
| Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase; domain 1 | Phosphohistidine domain |
#chains in the Genus database with same CATH superfamily 2FM4 A; 2DIK A; 2HWG A; 2R82 A; 1VBH A; 2EZC A; 1DIK A; 1VBG A; 2EZA A; 1GGO A; 1KC7 A; 3EZE A; 3T0T A; 5JVL A; 2HRO A; 3T05 A; 2E28 A; 1ZYM A; 3EZB A; 1KBL A; 2OLS A; 2MP0 A; 2X0S A; 3EZA A; 2EZB A; 1JDE A; 2HI6 A; 1EZB A; 3T07 A; 1EZA A; #chains in the Genus database with same CATH topology 2HWG A; 2JBJ A; 3D7H A; 2JA7 A; 3GTJ A; 1Y1W A; 1YNJ D; 4JYW A; 1I3Q A; 4C9V A; 4P4D A; 3EZB A; 2EZB A; 4V2Q A; 1NXJ A; 4E5S A; 4FBS A; 2PVV A; 3D7D A; 4MCP A; 2A6H D; 4P45 A; 3IIB A; 4C8C A; 3BXM A; 1HQM D; 2A6E D; 4X3R A; 2FIP A; 4C5U A; 1Z8L A; 2B63 A; 4C5S A; 1Y2M A; 2O5J D; 2E2I A; 4P4B A; 2PVW A; 3GTP A; 3T05 A; 1XF1 A; 3GTQ A; 2MX8 A; 1JDE A; 4P4E A; 2C6P A; 4MCR A; 2DIK A; 5F09 A; 5IB9 A; 1SMY D; 3C8O A; 2R82 A; 4C8P A; 3LRD A; 2D0P A; 3D7G A; 4OC2 A; 4MI1 A; 1V6C A; 3H0G A; 4P4J A; 2K3O A; 5JVL A; 2N3E A; 4C86 A; 2C6G A; 1CS0 B; 3ICU A; 4BAB A; 2MQA A; 3TLB A; 1EZA A; 1TWH A; 1Q5X A; 4C8T A; 2OOT A; 1VBH A; 3SJX A; 4MCQ A; 2XEI A; 2MX9 A; 2LKM B; 4OME A; 4OC3 A; 2LPI A; 3KRV A; 2EK8 A; 1IW7 D; 2CIJ A; 4E94 A; 4TJV A; 4YN3 A; 3TLY A; 3GTO A; 1W27 A; 1Y1V A; 3FF3 A; 1CE8 B; 2EZA A; 3TLC A; 2YII A; 4NGQ A; 3TLE A; 2K3Q A; 2AQL A; 1DE4 C; 1EZB A; 1KEE B; 5F1Y A; 2FM4 A; 2Y0N A; 4C6G A; 4P4I A; 3SJF A; 2XEF A; 4NGN A; 4NGM A; 4C9A A; 3GTL A; 4P44 A; 2CW0 D; 3LR6 A; 5ELY A; 1KBL A; 4COG A; 3VTA A; 2B0A A; 4JVO A; 2BE5 D; 4C9R A; 2F5J A; 2PCN A; 1DIK A; 1VI4 A; 4JZ0 A; 4C5R A; 4QIW A; 4OC4 A; 2GP4 A; 1I6V D; 1BXR B; 3D7F A; 2R92 A; 3TYX A; 3EZA A; 4C2M A; 3T07 A; 5D29 A; 2JBK A; 4LQG A; 2NVX A; 3RBU A; 2E2H A; 1ZYR D; 2A68 D; 3EIF A; 3FEE A; 3S9M A; 2OLS A; 1WCM A; 3SR3 A; 2JA5 A; 3GTG A; 3TLG B; 2K3N A; 3I74 A; 1T36 B; 2LPJ A; 2EK9 A; 4CO9 A; 3FED A; 3U4Q A; 2YJV A; 2OR4 A; 2A69 D; 3BHX A; 4CQ5 A; 4CDK A; 3TLG A; 1C3O B; 2VK9 A; 1TWC A; 2HI6 A; 3KAS A; 2AUM A; 4NGT A; 2R93 A; 4OC5 A; 4C8F A; 1R9T A; 2R7Z A; 3IWW A; 2NVY A; 4W9Y A; 4C85 A; 2XEG A; 2MP0 A; 3LR8 A; 3NZ4 A; 5F5X A; 3SJE A; 2X0P A; 1R61 A; 3S9N A; 4NGR A; 1TWF A; 4MCS A; 1I50 A; 3FKI A; 4COB A; 2EZC A; 4KNG E; 1SFO A; 3S9L A; 1T6J A; 4C84 A; 5K99 A; 4EYS A; 1M6V B; 3TLA A; 3U1B A; 3K4I A; 2LTH A; 3GJZ A; 3I6S A; 4CEJ A; 2D0O A; 4CZ1 A; 1KC7 A; 1T6P A; 1C30 B; 5FD8 A; 3GTM A; 4IIX A; 4C9U A; 1NBW A; 2XEJ A; 2JA6 A; 4CEI A; 4BAA A; 2AUN A; 2LYI A; 4C9E A; 1VBG A; 3T5M A; 3BI0 A; 1GGO A; 5F9M A; 3LR2 A; 1ZYM A; 2E28 A; 1ZL0 A; 4TJX A; 3K9T A; 2N1D B; 4OC1 A; 3SJG A; 4NGS A; 1A9X B; 4OC0 A; 4CDJ A; 3U44 A; 3FEC A; 1CX8 A; 4CEH A; 3CQZ A; 4TWE A; 2C5Q A; 1WVM A; 3EZE A; 2C6C A; 4V2R A; 4MJX A; 5IZ2 A; 4C99 A; 5JYB A; 1K83 A; 3G23 A; 4INJ A; 4NGP A; 1J3L A; 2YJT A; 4P4F A; 1TWG A; 2FIO A; 4C8U A; 3NOJ A; 4M8D A; 1TWA A; 4H1H A; 5IR2 A; 3TLZ A; 4C8A A; 2X0O A; 2X0Q A; 1YNN D; 1ZRS A; 3T0T A; 2VUM A; 3GTK A; 2HRO A; 1JDB C; 2X0S A; 4J0N A; 2YU9 A; 3BI1 A; 1Y9Z A; 4IIY A; #chains in the Genus database with same CATH homology 2FM4 A; 2DIK A; 2HWG A; 2R82 A; 1VBH A; 2EZC A; 1DIK A; 1VBG A; 2EZA A; 1GGO A; 1KC7 A; 3EZE A; 3T0T A; 5JVL A; 2HRO A; 3T05 A; 2E28 A; 1ZYM A; 3EZB A; 1KBL A; 2OLS A; 2MP0 A; 2X0S A; 3EZA A; 2EZB A; 1JDE A; 2HI6 A; 1EZB A; 3T07 A; 1EZA A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
