4R60A

Crystal structure of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
397
structure length
397
Chain Sequence
TQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVRLEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris
rcsb
source organism Xanthomonas campestris pv. campestris str. atcc 33913
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 128
structure length 397
sequence length 397
chains with identical sequence B
ec nomenclature ec 3.4.13.9: Xaa-Pro dipeptidase.
pdb deposition date 2014-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 4r60A01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4r60A02
1Y1NA 1YVMA 2B3LA 5CE6A 1M35A 1YW7A 1WKMA 2Q92A 4A6WA 2BWWA 3RVAA 1WY2A 2V3XA 2MATA 3D27A 5D6EA 2BWUA 3FMRA 4U6WA 2GGCA 4B28A 2GG5A 5D6FA 4MATA 4JUQA 5FCFA 4R60A 3IL0A 4ZWUA 3FMQA 1N51A 3IU9A 3O5VA 1QXYA 2OKNA 4ZNGA 4RGZ1 2ADUA 2G6PA 2B3HA 2IW2A 3L7GA 4KM3A 2GU4A 5CLSA 1XGNA 3PKCA 3PEBA 3MR1A 2BWXA 2GA2A 5JHUA 4S2TP 1WL9A 4EGEA 4FLKA 2GG9A 4IF7A 1WN1A 2BHBA 4S01A 1YW8A 2EA2A 4Z7MA 4IDYA 2NQ6A 1C27A 1YJ3A 2EA4A 2GU6A 2BH3A 4U6ZA 3FM3A 1BOAA 4IKRA 3OVKA 4FUKA 4RZYA 4FLJA 1C21A 2NQ7A 4U6EA 2GG8A 1WBQA 4U6JA 3RORA 3IU8A 4PNCA 1W7VA 4U6CA 1O0XA 3BIPA 2Q8KA 2Q95A 1KQ0A 3CB6A 3PN9A 2BHAA 4IKTA 3QOCA 4FO8A 1YW9A 4OOKA 3S6BA 3OOOA 1MATA 1WLRA 2BB7A 1XGSA 3PKDA 2GTXA 2BN7A 5E5BA 4PV4A 2EVCA 3TB5A 1PV9A 2BWYA 1QXWA 1W2MA 3CB5A 2GZ5A 3PKAA 4FLIA 1C22A 1R5GA 2HOWA 3PKEA 2GU5A 4QR8A 4U71A 1C23A 2EVOA 4S00A 2P9AA 4FO7A 1A16A 4HXXA 1XNZA 4ZWPA 2BWSA 2BHDA 5CDLA 1WL6A 3TAVA 3BITA 2V6CA 4A6VA 1QZYA 3IG4A 1XGMA 4RZZA 3BIQA 2P98A 2BWTA 1KQ9A 2GG0A 3IU7A 3L24A 2GG3A 2GGBA 2GG7A 4U69A 5FCHA 2B3KA 4S2RP 1KP0A 3CTZA 4U73A 2V3ZA 3MX6A 1R58A 1XGOA 4U76A 4IU6A 3Q6DA 1B6AA 4IPAA 1B59A 1C24A 1QXZA 2Q93A 1R5HA 2BWVA 4U70A 2P99A 5CNXA 4ZWOA 3I7MA 4U1BA 1BN5A 5CDEA 3MATA 2BHCA 2GG2A 5CDVA 1CHMA 2OAZA 4FLLA 2ZSGA 5CIKA 4IKSA 2EVMA 2V3YA 4IKUA 2DFIA 2GU7A 3PKBA 4U75A 4IECA 4FKCA 2Q96A 1JAWA 5E2CA 5JI6A 5JFRA 2Q94A
chains in the Genus database with same CATH superfamily
1Y1NA 1YVMA 2B3LA 5CE6A 1M35A 1YW7A 1WKMA 2Q92A 4A6WA 2BWWA 3RVAA 1WY2A 2V3XA 2MATA 3D27A 5D6EA 2BWUA 3FMRA 4U6WA 2GGCA 4B28A 2GG5A 5D6FA 4MATA 4JUQA 5FCFA 4R60A 3IL0A 4ZWUA 3FMQA 1N51A 3IU9A 3O5VA 1QXYA 2OKNA 4ZNGA 4RGZ1 2ADUA 2G6PA 2B3HA 2IW2A 3L7GA 4KM3A 2GU4A 5CLSA 1XGNA 3PKCA 3PEBA 3MR1A 2BWXA 2GA2A 5JHUA 4S2TP 1WL9A 4EGEA 4FLKA 2GG9A 4IF7A 1WN1A 2BHBA 4S01A 1YW8A 2EA2A 4Z7MA 4IDYA 2NQ6A 1C27A 1YJ3A 2EA4A 2GU6A 2BH3A 4U6ZA 3FM3A 1BOAA 4IKRA 3OVKA 4FUKA 4RZYA 4FLJA 1C21A 2NQ7A 4U6EA 2GG8A 1WBQA 4U6JA 3RORA 3IU8A 4PNCA 1W7VA 4U6CA 1O0XA 3BIPA 2Q8KA 2Q95A 1KQ0A 3CB6A 3PN9A 2BHAA 4IKTA 3QOCA 4FO8A 1YW9A 4OOKA 3S6BA 3OOOA 1MATA 1WLRA 2BB7A 1XGSA 3PKDA 2GTXA 2BN7A 5E5BA 4PV4A 2EVCA 3TB5A 1PV9A 2BWYA 1QXWA 1W2MA 3CB5A 2GZ5A 3PKAA 4FLIA 1C22A 1R5GA 2HOWA 3PKEA 2GU5A 4QR8A 4U71A 1C23A 2EVOA 4S00A 2P9AA 4FO7A 1A16A 4HXXA 1XNZA 4ZWPA 2BWSA 2BHDA 5CDLA 1WL6A 3TAVA 3BITA 2V6CA 4A6VA 1QZYA 3IG4A 1XGMA 4RZZA 3BIQA 2P98A 2BWTA 1KQ9A 2GG0A 3IU7A 3L24A 2GG3A 2GGBA 2GG7A 4U69A 5FCHA 2B3KA 4S2RP 1KP0A 3CTZA 4U73A 2V3ZA 3MX6A 1R58A 1XGOA 4U76A 4IU6A 3Q6DA 1B6AA 4IPAA 1B59A 1C24A 1QXZA 2Q93A 1R5HA 2BWVA 4U70A 2P99A 5CNXA 4ZWOA 3I7MA 4U1BA 1BN5A 5CDEA 3MATA 2BHCA 2GG2A 5CDVA 1CHMA 2OAZA 4FLLA 2ZSGA 5CIKA 4IKSA 2EVMA 2V3YA 4IKUA 2DFIA 2GU7A 3PKBA 4U75A 4IECA 4FKCA 2Q96A 1JAWA 5E2CA 5JI6A 5JFRA 2Q94A
chains in the Genus database with same CATH topology
1Y1NA 1YVMA 2B3LA 5CE6A 1M35A 1YW7A 1WKMA 2Q92A 4A6WA 2BWWA 3RVAA 1WY2A 2V3XA 2MATA 3D27A 5D6EA 2BWUA 3FMRA 4U6WA 2GGCA 4B28A 2GG5A 5D6FA 4MATA 4JUQA 5FCFA 4R60A 3IL0A 4ZWUA 3FMQA 1N51A 3IU9A 3O5VA 1QXYA 2OKNA 4ZNGA 4RGZ1 2ADUA 2G6PA 2B3HA 2IW2A 3L7GA 4KM3A 2GU4A 5CLSA 1XGNA 3PKCA 3PEBA 3MR1A 2BWXA 2GA2A 5JHUA 4S2TP 1WL9A 4EGEA 4FLKA 2GG9A 4IF7A 1WN1A 2BHBA 4S01A 1YW8A 2EA2A 4Z7MA 4IDYA 2NQ6A 1C27A 1YJ3A 2EA4A 2GU6A 2BH3A 4U6ZA 3FM3A 1BOAA 4IKRA 3OVKA 4FUKA 4RZYA 4FLJA 1C21A 2NQ7A 4U6EA 2GG8A 1WBQA 4U6JA 3RORA 3IU8A 4PNCA 1W7VA 4U6CA 1O0XA 3BIPA 2Q8KA 2Q95A 1KQ0A 3CB6A 3PN9A 2BHAA 4IKTA 3QOCA 4FO8A 1YW9A 4OOKA 3S6BA 3OOOA 1MATA 1WLRA 2BB7A 1XGSA 3PKDA 2GTXA 2BN7A 5E5BA 4PV4A 2EVCA 3TB5A 1PV9A 2BWYA 1QXWA 1W2MA 3CB5A 2GZ5A 3PKAA 4FLIA 1C22A 1R5GA 2HOWA 3PKEA 2GU5A 4QR8A 4U71A 1C23A 2EVOA 4S00A 2P9AA 4FO7A 1A16A 4HXXA 1XNZA 4ZWPA 2BWSA 2BHDA 5CDLA 1WL6A 3TAVA 3BITA 2V6CA 4A6VA 1QZYA 3IG4A 1XGMA 4RZZA 3BIQA 2P98A 2BWTA 1KQ9A 2GG0A 3IU7A 3L24A 2GG3A 2GGBA 2GG7A 4U69A 5FCHA 2B3KA 4S2RP 1KP0A 3CTZA 4U73A 2V3ZA 3MX6A 1R58A 1XGOA 4U76A 4IU6A 3Q6DA 1B6AA 4IPAA 1B59A 1C24A 1QXZA 2Q93A 1R5HA 2BWVA 4U70A 2P99A 5CNXA 4ZWOA 3I7MA 4U1BA 1BN5A 5CDEA 3MATA 2BHCA 2GG2A 5CDVA 1CHMA 2OAZA 4FLLA 2ZSGA 5CIKA 4IKSA 2EVMA 2V3YA 4IKUA 2DFIA 2GU7A 3PKBA 4U75A 4IECA 4FKCA 2Q96A 1JAWA 5E2CA 5JI6A 5JFRA 2Q94A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1N A;  1YVM A;  2B3L A;  5CE6 A;  1M35 A;  1YW7 A;  1WKM A;  2Q92 A;  4A6W A;  2BWW A;  3RVA A;  1WY2 A;  2V3X A;  2MAT A;  3D27 A;  5D6E A;  2BWU A;  3FMR A;  4U6W A;  2GGC A;  4B28 A;  2GG5 A;  5D6F A;  4MAT A;  4JUQ A;  5FCF A;  4R60 A;  3IL0 A;  4ZWU A;  3FMQ A;  1N51 A;  3IU9 A;  3O5V A;  1QXY A;  2OKN A;  4ZNG A;  4RGZ 1;  2ADU A;  2G6P A;  2B3H A;  2IW2 A;  3L7G A;  4KM3 A;  2GU4 A;  5CLS A;  1XGN A;  3PKC A;  3PEB A;  3MR1 A;  2BWX A;  2GA2 A;  5JHU A;  4S2T P;  1WL9 A;  4EGE A;  4FLK A;  2GG9 A;  4IF7 A;  1WN1 A;  2BHB A;  4S01 A;  1YW8 A;  2EA2 A;  4Z7M A;  4IDY A;  2NQ6 A;  1C27 A;  1YJ3 A;  2EA4 A;  2GU6 A;  2BH3 A;  4U6Z A;  3FM3 A;  1BOA A;  4IKR A;  3OVK A;  4FUK A;  4RZY A;  4FLJ A;  1C21 A;  2NQ7 A;  4U6E A;  2GG8 A;  1WBQ A;  4U6J A;  3ROR A;  3IU8 A;  4PNC A;  1W7V A;  4U6C A;  1O0X A;  3BIP A;  2Q8K A;  2Q95 A;  1KQ0 A;  3CB6 A;  3PN9 A;  2BHA A;  4IKT A;  3QOC A;  4FO8 A;  1YW9 A;  4OOK A;  3S6B A;  3OOO A;  1MAT A;  1WLR A;  2BB7 A;  1XGS A;  3PKD A;  2GTX A;  2BN7 A;  5E5B A;  4PV4 A;  2EVC A;  3TB5 A;  1PV9 A;  2BWY A;  1QXW A;  1W2M A;  3CB5 A;  2GZ5 A;  3PKA A;  4FLI A;  1C22 A;  1R5G A;  2HOW A;  3PKE A;  2GU5 A;  4QR8 A;  4U71 A;  1C23 A;  2EVO A;  4S00 A;  2P9A A;  4FO7 A;  1A16 A;  4HXX A;  1XNZ A;  4ZWP A;  2BWS A;  2BHD A;  5CDL A;  1WL6 A;  3TAV A;  3BIT A;  2V6C A;  4A6V A;  1QZY A;  3IG4 A;  1XGM A;  4RZZ A;  3BIQ A;  2P98 A;  2BWT A;  1KQ9 A;  2GG0 A;  3IU7 A;  3L24 A;  2GG3 A;  2GGB A;  2GG7 A;  4U69 A;  5FCH A;  2B3K A;  4S2R P;  1KP0 A;  3CTZ A;  4U73 A;  2V3Z A;  3MX6 A;  1R58 A;  1XGO A;  4U76 A;  4IU6 A;  3Q6D A;  1B6A A;  4IPA A;  1B59 A;  1C24 A;  1QXZ A;  2Q93 A;  1R5H A;  2BWV A;  4U70 A;  2P99 A;  5CNX A;  4ZWO A;  3I7M A;  4U1B A;  1BN5 A;  5CDE A;  3MAT A;  2BHC A;  2GG2 A;  5CDV A;  1CHM A;  2OAZ A;  4FLL A;  2ZSG A;  5CIK A;  4IKS A;  2EVM A;  2V3Y A;  4IKU A;  2DFI A;  2GU7 A;  3PKB A;  4U75 A;  4IEC A;  4FKC A;  2Q96 A;  1JAW A;  5E2C A;  5JI6 A;  5JFR A;  2Q94 A; 
#chains in the Genus database with same CATH topology
 1Y1N A;  1YVM A;  2B3L A;  5CE6 A;  1M35 A;  1YW7 A;  1WKM A;  2Q92 A;  4A6W A;  2BWW A;  3RVA A;  1WY2 A;  2V3X A;  2MAT A;  3D27 A;  5D6E A;  2BWU A;  3FMR A;  4U6W A;  2GGC A;  4B28 A;  2GG5 A;  5D6F A;  4MAT A;  4JUQ A;  5FCF A;  4R60 A;  3IL0 A;  4ZWU A;  3FMQ A;  1N51 A;  3IU9 A;  3O5V A;  1QXY A;  2OKN A;  4ZNG A;  4RGZ 1;  2ADU A;  2G6P A;  2B3H A;  2IW2 A;  3L7G A;  4KM3 A;  2GU4 A;  5CLS A;  1XGN A;  3PKC A;  3PEB A;  3MR1 A;  2BWX A;  2GA2 A;  5JHU A;  4S2T P;  1WL9 A;  4EGE A;  4FLK A;  2GG9 A;  4IF7 A;  1WN1 A;  2BHB A;  4S01 A;  1YW8 A;  2EA2 A;  4Z7M A;  4IDY A;  2NQ6 A;  1C27 A;  1YJ3 A;  2EA4 A;  2GU6 A;  2BH3 A;  4U6Z A;  3FM3 A;  1BOA A;  4IKR A;  3OVK A;  4FUK A;  4RZY A;  4FLJ A;  1C21 A;  2NQ7 A;  4U6E A;  2GG8 A;  1WBQ A;  4U6J A;  3ROR A;  3IU8 A;  4PNC A;  1W7V A;  4U6C A;  1O0X A;  3BIP A;  2Q8K A;  2Q95 A;  1KQ0 A;  3CB6 A;  3PN9 A;  2BHA A;  4IKT A;  3QOC A;  4FO8 A;  1YW9 A;  4OOK A;  3S6B A;  3OOO A;  1MAT A;  1WLR A;  2BB7 A;  1XGS A;  3PKD A;  2GTX A;  2BN7 A;  5E5B A;  4PV4 A;  2EVC A;  3TB5 A;  1PV9 A;  2BWY A;  1QXW A;  1W2M A;  3CB5 A;  2GZ5 A;  3PKA A;  4FLI A;  1C22 A;  1R5G A;  2HOW A;  3PKE A;  2GU5 A;  4QR8 A;  4U71 A;  1C23 A;  2EVO A;  4S00 A;  2P9A A;  4FO7 A;  1A16 A;  4HXX A;  1XNZ A;  4ZWP A;  2BWS A;  2BHD A;  5CDL A;  1WL6 A;  3TAV A;  3BIT A;  2V6C A;  4A6V A;  1QZY A;  3IG4 A;  1XGM A;  4RZZ A;  3BIQ A;  2P98 A;  2BWT A;  1KQ9 A;  2GG0 A;  3IU7 A;  3L24 A;  2GG3 A;  2GGB A;  2GG7 A;  4U69 A;  5FCH A;  2B3K A;  4S2R P;  1KP0 A;  3CTZ A;  4U73 A;  2V3Z A;  3MX6 A;  1R58 A;  1XGO A;  4U76 A;  4IU6 A;  3Q6D A;  1B6A A;  4IPA A;  1B59 A;  1C24 A;  1QXZ A;  2Q93 A;  1R5H A;  2BWV A;  4U70 A;  2P99 A;  5CNX A;  4ZWO A;  3I7M A;  4U1B A;  1BN5 A;  5CDE A;  3MAT A;  2BHC A;  2GG2 A;  5CDV A;  1CHM A;  2OAZ A;  4FLL A;  2ZSG A;  5CIK A;  4IKS A;  2EVM A;  2V3Y A;  4IKU A;  2DFI A;  2GU7 A;  3PKB A;  4U75 A;  4IEC A;  4FKC A;  2Q96 A;  1JAW A;  5E2C A;  5JI6 A;  5JFR A;  2Q94 A; 
#chains in the Genus database with same CATH homology
 1Y1N A;  1YVM A;  2B3L A;  5CE6 A;  1M35 A;  1YW7 A;  1WKM A;  2Q92 A;  4A6W A;  2BWW A;  3RVA A;  1WY2 A;  2V3X A;  2MAT A;  3D27 A;  5D6E A;  2BWU A;  3FMR A;  4U6W A;  2GGC A;  4B28 A;  2GG5 A;  5D6F A;  4MAT A;  4JUQ A;  5FCF A;  4R60 A;  3IL0 A;  4ZWU A;  3FMQ A;  1N51 A;  3IU9 A;  3O5V A;  1QXY A;  2OKN A;  4ZNG A;  4RGZ 1;  2ADU A;  2G6P A;  2B3H A;  2IW2 A;  3L7G A;  4KM3 A;  2GU4 A;  5CLS A;  1XGN A;  3PKC A;  3PEB A;  3MR1 A;  2BWX A;  2GA2 A;  5JHU A;  4S2T P;  1WL9 A;  4EGE A;  4FLK A;  2GG9 A;  4IF7 A;  1WN1 A;  2BHB A;  4S01 A;  1YW8 A;  2EA2 A;  4Z7M A;  4IDY A;  2NQ6 A;  1C27 A;  1YJ3 A;  2EA4 A;  2GU6 A;  2BH3 A;  4U6Z A;  3FM3 A;  1BOA A;  4IKR A;  3OVK A;  4FUK A;  4RZY A;  4FLJ A;  1C21 A;  2NQ7 A;  4U6E A;  2GG8 A;  1WBQ A;  4U6J A;  3ROR A;  3IU8 A;  4PNC A;  1W7V A;  4U6C A;  1O0X A;  3BIP A;  2Q8K A;  2Q95 A;  1KQ0 A;  3CB6 A;  3PN9 A;  2BHA A;  4IKT A;  3QOC A;  4FO8 A;  1YW9 A;  4OOK A;  3S6B A;  3OOO A;  1MAT A;  1WLR A;  2BB7 A;  1XGS A;  3PKD A;  2GTX A;  2BN7 A;  5E5B A;  4PV4 A;  2EVC A;  3TB5 A;  1PV9 A;  2BWY A;  1QXW A;  1W2M A;  3CB5 A;  2GZ5 A;  3PKA A;  4FLI A;  1C22 A;  1R5G A;  2HOW A;  3PKE A;  2GU5 A;  4QR8 A;  4U71 A;  1C23 A;  2EVO A;  4S00 A;  2P9A A;  4FO7 A;  1A16 A;  4HXX A;  1XNZ A;  4ZWP A;  2BWS A;  2BHD A;  5CDL A;  1WL6 A;  3TAV A;  3BIT A;  2V6C A;  4A6V A;  1QZY A;  3IG4 A;  1XGM A;  4RZZ A;  3BIQ A;  2P98 A;  2BWT A;  1KQ9 A;  2GG0 A;  3IU7 A;  3L24 A;  2GG3 A;  2GGB A;  2GG7 A;  4U69 A;  5FCH A;  2B3K A;  4S2R P;  1KP0 A;  3CTZ A;  4U73 A;  2V3Z A;  3MX6 A;  1R58 A;  1XGO A;  4U76 A;  4IU6 A;  3Q6D A;  1B6A A;  4IPA A;  1B59 A;  1C24 A;  1QXZ A;  2Q93 A;  1R5H A;  2BWV A;  4U70 A;  2P99 A;  5CNX A;  4ZWO A;  3I7M A;  4U1B A;  1BN5 A;  5CDE A;  3MAT A;  2BHC A;  2GG2 A;  5CDV A;  1CHM A;  2OAZ A;  4FLL A;  2ZSG A;  5CIK A;  4IKS A;  2EVM A;  2V3Y A;  4IKU A;  2DFI A;  2GU7 A;  3PKB A;  4U75 A;  4IEC A;  4FKC A;  2Q96 A;  1JAW A;  5E2C A;  5JI6 A;  5JFR A;  2Q94 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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