5CDEA

R372a mutant of xaa-pro dipeptidase from xanthomonas campestris
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
398
structure length
398
Chain Sequence
STQIGGMSLDQARTQLAPWTQRAAPIGADEYQQRIERARVLMRAQGVDALLIGAGTSLRYFSGVPWGASERLVALLLTTEGDPVLICPAFEEGSLDAVLQLPVRKRLWEEHEDPYALVVQAMDEQHAHALALDPGIAFAVHTGLRAHLGTAIRDAGAIIDGCRMCKSPAELALMQQACDMTLLVQRLAAGIAHEGIGTDQLVRFIDEAHRALGADNGSTFCIVQFGHATAFPHGIPGVQHLRAGELVLIDTGCTVQGYHSDITRTWIYGTPSDAQQRIWELELAAQAAAFAAVRPGVACEAVDQAARAVLQAAGLGPDYRLPGLPHRTGHGCGLAIHEAPYLVRGNRQPLQPGMCASNEPMIVVPGAFGVALEDHFYVTDTGAQWFTPPSVAIDQPFA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title R372A mutant of Xaa-Pro dipeptidase from Xanthomonas campestris at 1.85 Angstrom resolution
rcsb
source organism Xanthomonas campestris
molecule tags Hydrolase
molecule keywords Proline dipeptidase
total genus 133
structure length 398
sequence length 398
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
A PF01321 Creatinase_N Creatinase/Prolidase N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.350.10 Alpha Beta 3-Layer(aba) Sandwich Creatine Amidinohydrolase; Chain A, domain 1 Creatinase/prolidase N-terminal domain 5cdeA01
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 5cdeA02
2BWUA 3PKBA 4S2RP 1C24A 3IU9A 4IKRA 5JHUA 4FLKA 3RVAA 1QXWA 2B3HA 2EA4A 2BHCA 1WL6A 2Q93A 4Z7MA 3IL0A 5FCFA 1YW8A 4ZWUA 2BWSA 1B6AA 4U76A 3BIPA 3FMRA 3CB5A 4ZWOA 2OAZA 5E2CA 1C22A 4FUKA 4OOKA 5E5BA 3L24A 2ADUA 3Q6DA 4FLIA 2G6PA 4IDYA 2EVOA 2BWXA 5JI6A 2MATA 1WN1A 2NQ6A 2B3KA 1C21A 2BHDA 4U75A 4IKUA 3IG4A 2BHBA 4KM3A 1XGOA 3RORA 2BWYA 2BH3A 2Q96A 3IU7A 2OKNA 2GTXA 3S6BA 4U6ZA 2BWTA 3PKDA 2EVMA 3OVKA 4FO8A 2BWVA 2GG3A 2GG9A 1Y1NA 5CNXA 1QZYA 2GGCA 5FCHA 1WL9A 4FLJA 3BITA 2EVCA 1W2MA 1BOAA 2V3YA 3BIQA 4MATA 3L7GA 3PKAA 2GU5A 1W7VA 5D6FA 1JAWA 2Q92A 3D27A 3FM3A 3QOCA 2GA2A 4RZYA 2GG2A 2GU4A 4RZZA 4ZWPA 1XNZA 4PV4A 2Q94A 1N51A 5CLSA 2DFIA 3PEBA 2GZ5A 1WY2A 4B28A 4ZNGA 5JFRA 2IW2A 4JUQA 4FO7A 3I7MA 4IKSA 1M35A 4U6JA 2GG7A 3TB5A 1A16A 4A6VA 4U71A 3PKCA 2GU6A 1BN5A 1XGSA 3PN9A 1KQ9A 5CDLA 4IPAA 2P98A 4S2TP 4IECA 4U73A 1KP0A 2V3ZA 4PNCA 2V3XA 4U6CA 1QXYA 2Q8KA 3MR1A 4FLLA 2P9AA 5CIKA 2BHAA 2GU7A 3CB6A 5CE6A 2BWWA 1YW9A 1WBQA 5D6EA 2EA2A 2GGBA 1MATA 4IF7A 4QR8A 1YVMA 4IU6A 4EGEA 1WKMA 3MATA 4A6WA 5CDEA 1B59A 4FKCA 3OOOA 3FMQA 3CTZA 3PKEA 3MX6A 1PV9A 1C23A 4RGZ1 2BN7A 1KQ0A 3TAVA 2HOWA 2Q95A 3IU8A 2BB7A 2GG8A 2B3LA 1QXZA 4S01A 2GG5A 2NQ7A 2V6CA 1R5HA 1WLRA 1R58A 1XGMA 4U6EA 1XGNA 1YW7A 5CDVA 4HXXA 1O0XA 1CHMA 1R5GA 2P99A 4U1BA 3O5VA 2GG0A 4R60A 4U69A 2ZSGA 4U6WA 4IKTA 4S00A 4U70A 1YJ3A 1C27A
chains in the Genus database with same CATH superfamily
2BWUA 3PKBA 4S2RP 1C24A 3IU9A 4IKRA 5JHUA 4FLKA 3RVAA 1QXWA 2B3HA 2EA4A 2BHCA 1WL6A 2Q93A 4Z7MA 3IL0A 5FCFA 1YW8A 4ZWUA 2BWSA 1B6AA 4U76A 3BIPA 3FMRA 3CB5A 4ZWOA 2OAZA 5E2CA 1C22A 4FUKA 4OOKA 5E5BA 3L24A 2ADUA 3Q6DA 4FLIA 2G6PA 4IDYA 2EVOA 2BWXA 5JI6A 2MATA 1WN1A 2NQ6A 2B3KA 1C21A 2BHDA 4U75A 4IKUA 3IG4A 2BHBA 4KM3A 1XGOA 3RORA 2BWYA 2BH3A 2Q96A 3IU7A 2OKNA 2GTXA 3S6BA 4U6ZA 2BWTA 3PKDA 2EVMA 3OVKA 4FO8A 2BWVA 2GG3A 2GG9A 1Y1NA 5CNXA 1QZYA 2GGCA 5FCHA 1WL9A 4FLJA 3BITA 2EVCA 1W2MA 1BOAA 2V3YA 3BIQA 4MATA 3L7GA 3PKAA 2GU5A 1W7VA 5D6FA 1JAWA 2Q92A 3D27A 3FM3A 3QOCA 2GA2A 4RZYA 2GG2A 2GU4A 4RZZA 4ZWPA 1XNZA 4PV4A 2Q94A 1N51A 5CLSA 2DFIA 3PEBA 2GZ5A 1WY2A 4B28A 4ZNGA 5JFRA 2IW2A 4JUQA 4FO7A 3I7MA 4IKSA 1M35A 4U6JA 2GG7A 3TB5A 1A16A 4A6VA 4U71A 3PKCA 2GU6A 1BN5A 1XGSA 3PN9A 1KQ9A 5CDLA 4IPAA 2P98A 4S2TP 4IECA 4U73A 1KP0A 2V3ZA 4PNCA 2V3XA 4U6CA 1QXYA 2Q8KA 3MR1A 4FLLA 2P9AA 5CIKA 2BHAA 2GU7A 3CB6A 5CE6A 2BWWA 1YW9A 1WBQA 5D6EA 2EA2A 2GGBA 1MATA 4IF7A 4QR8A 1YVMA 4IU6A 4EGEA 1WKMA 3MATA 4A6WA 5CDEA 1B59A 4FKCA 3OOOA 3FMQA 3CTZA 3PKEA 3MX6A 1PV9A 1C23A 4RGZ1 2BN7A 1KQ0A 3TAVA 2HOWA 2Q95A 3IU8A 2BB7A 2GG8A 2B3LA 1QXZA 4S01A 2GG5A 2NQ7A 2V6CA 1R5HA 1WLRA 1R58A 1XGMA 4U6EA 1XGNA 1YW7A 5CDVA 4HXXA 1O0XA 1CHMA 1R5GA 2P99A 4U1BA 3O5VA 2GG0A 4R60A 4U69A 2ZSGA 4U6WA 4IKTA 4S00A 4U70A 1YJ3A 1C27A
chains in the Genus database with same CATH topology
2BWUA 3PKBA 4S2RP 1C24A 3IU9A 4IKRA 5JHUA 4FLKA 3RVAA 1QXWA 2B3HA 2EA4A 2BHCA 1WL6A 2Q93A 4Z7MA 3IL0A 5FCFA 1YW8A 4ZWUA 2BWSA 1B6AA 4U76A 3BIPA 3FMRA 3CB5A 4ZWOA 2OAZA 5E2CA 1C22A 4FUKA 4OOKA 5E5BA 3L24A 2ADUA 3Q6DA 4FLIA 2G6PA 4IDYA 2EVOA 2BWXA 5JI6A 2MATA 1WN1A 2NQ6A 2B3KA 1C21A 2BHDA 4U75A 4IKUA 3IG4A 2BHBA 4KM3A 1XGOA 3RORA 2BWYA 2BH3A 2Q96A 3IU7A 2OKNA 2GTXA 3S6BA 4U6ZA 2BWTA 3PKDA 2EVMA 3OVKA 4FO8A 2BWVA 2GG3A 2GG9A 1Y1NA 5CNXA 1QZYA 2GGCA 5FCHA 1WL9A 4FLJA 3BITA 2EVCA 1W2MA 1BOAA 2V3YA 3BIQA 4MATA 3L7GA 3PKAA 2GU5A 1W7VA 5D6FA 1JAWA 2Q92A 3D27A 3FM3A 3QOCA 2GA2A 4RZYA 2GG2A 2GU4A 4RZZA 4ZWPA 1XNZA 4PV4A 2Q94A 1N51A 5CLSA 2DFIA 3PEBA 2GZ5A 1WY2A 4B28A 4ZNGA 5JFRA 2IW2A 4JUQA 4FO7A 3I7MA 4IKSA 1M35A 4U6JA 2GG7A 3TB5A 1A16A 4A6VA 4U71A 3PKCA 2GU6A 1BN5A 1XGSA 3PN9A 1KQ9A 5CDLA 4IPAA 2P98A 4S2TP 4IECA 4U73A 1KP0A 2V3ZA 4PNCA 2V3XA 4U6CA 1QXYA 2Q8KA 3MR1A 4FLLA 2P9AA 5CIKA 2BHAA 2GU7A 3CB6A 5CE6A 2BWWA 1YW9A 1WBQA 5D6EA 2EA2A 2GGBA 1MATA 4IF7A 4QR8A 1YVMA 4IU6A 4EGEA 1WKMA 3MATA 4A6WA 5CDEA 1B59A 4FKCA 3OOOA 3FMQA 3CTZA 3PKEA 3MX6A 1PV9A 1C23A 4RGZ1 2BN7A 1KQ0A 3TAVA 2HOWA 2Q95A 3IU8A 2BB7A 2GG8A 2B3LA 1QXZA 4S01A 2GG5A 2NQ7A 2V6CA 1R5HA 1WLRA 1R58A 1XGMA 4U6EA 1XGNA 1YW7A 5CDVA 4HXXA 1O0XA 1CHMA 1R5GA 2P99A 4U1BA 3O5VA 2GG0A 4R60A 4U69A 2ZSGA 4U6WA 4IKTA 4S00A 4U70A 1YJ3A 1C27A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BWU A;  3PKB A;  4S2R P;  1C24 A;  3IU9 A;  4IKR A;  5JHU A;  4FLK A;  3RVA A;  1QXW A;  2B3H A;  2EA4 A;  2BHC A;  1WL6 A;  2Q93 A;  4Z7M A;  3IL0 A;  5FCF A;  1YW8 A;  4ZWU A;  2BWS A;  1B6A A;  4U76 A;  3BIP A;  3FMR A;  3CB5 A;  4ZWO A;  2OAZ A;  5E2C A;  1C22 A;  4FUK A;  4OOK A;  5E5B A;  3L24 A;  2ADU A;  3Q6D A;  4FLI A;  2G6P A;  4IDY A;  2EVO A;  2BWX A;  5JI6 A;  2MAT A;  1WN1 A;  2NQ6 A;  2B3K A;  1C21 A;  2BHD A;  4U75 A;  4IKU A;  3IG4 A;  2BHB A;  4KM3 A;  1XGO A;  3ROR A;  2BWY A;  2BH3 A;  2Q96 A;  3IU7 A;  2OKN A;  2GTX A;  3S6B A;  4U6Z A;  2BWT A;  3PKD A;  2EVM A;  3OVK A;  4FO8 A;  2BWV A;  2GG3 A;  2GG9 A;  1Y1N A;  5CNX A;  1QZY A;  2GGC A;  5FCH A;  1WL9 A;  4FLJ A;  3BIT A;  2EVC A;  1W2M A;  1BOA A;  2V3Y A;  3BIQ A;  4MAT A;  3L7G A;  3PKA A;  2GU5 A;  1W7V A;  5D6F A;  1JAW A;  2Q92 A;  3D27 A;  3FM3 A;  3QOC A;  2GA2 A;  4RZY A;  2GG2 A;  2GU4 A;  4RZZ A;  4ZWP A;  1XNZ A;  4PV4 A;  2Q94 A;  1N51 A;  5CLS A;  2DFI A;  3PEB A;  2GZ5 A;  1WY2 A;  4B28 A;  4ZNG A;  5JFR A;  2IW2 A;  4JUQ A;  4FO7 A;  3I7M A;  4IKS A;  1M35 A;  4U6J A;  2GG7 A;  3TB5 A;  1A16 A;  4A6V A;  4U71 A;  3PKC A;  2GU6 A;  1BN5 A;  1XGS A;  3PN9 A;  1KQ9 A;  5CDL A;  4IPA A;  2P98 A;  4S2T P;  4IEC A;  4U73 A;  1KP0 A;  2V3Z A;  4PNC A;  2V3X A;  4U6C A;  1QXY A;  2Q8K A;  3MR1 A;  4FLL A;  2P9A A;  5CIK A;  2BHA A;  2GU7 A;  3CB6 A;  5CE6 A;  2BWW A;  1YW9 A;  1WBQ A;  5D6E A;  2EA2 A;  2GGB A;  1MAT A;  4IF7 A;  4QR8 A;  1YVM A;  4IU6 A;  4EGE A;  1WKM A;  3MAT A;  4A6W A;  5CDE A;  1B59 A;  4FKC A;  3OOO A;  3FMQ A;  3CTZ A;  3PKE A;  3MX6 A;  1PV9 A;  1C23 A;  4RGZ 1;  2BN7 A;  1KQ0 A;  3TAV A;  2HOW A;  2Q95 A;  3IU8 A;  2BB7 A;  2GG8 A;  2B3L A;  1QXZ A;  4S01 A;  2GG5 A;  2NQ7 A;  2V6C A;  1R5H A;  1WLR A;  1R58 A;  1XGM A;  4U6E A;  1XGN A;  1YW7 A;  5CDV A;  4HXX A;  1O0X A;  1CHM A;  1R5G A;  2P99 A;  4U1B A;  3O5V A;  2GG0 A;  4R60 A;  4U69 A;  2ZSG A;  4U6W A;  4IKT A;  4S00 A;  4U70 A;  1YJ3 A;  1C27 A; 
#chains in the Genus database with same CATH topology
 2BWU A;  3PKB A;  4S2R P;  1C24 A;  3IU9 A;  4IKR A;  5JHU A;  4FLK A;  3RVA A;  1QXW A;  2B3H A;  2EA4 A;  2BHC A;  1WL6 A;  2Q93 A;  4Z7M A;  3IL0 A;  5FCF A;  1YW8 A;  4ZWU A;  2BWS A;  1B6A A;  4U76 A;  3BIP A;  3FMR A;  3CB5 A;  4ZWO A;  2OAZ A;  5E2C A;  1C22 A;  4FUK A;  4OOK A;  5E5B A;  3L24 A;  2ADU A;  3Q6D A;  4FLI A;  2G6P A;  4IDY A;  2EVO A;  2BWX A;  5JI6 A;  2MAT A;  1WN1 A;  2NQ6 A;  2B3K A;  1C21 A;  2BHD A;  4U75 A;  4IKU A;  3IG4 A;  2BHB A;  4KM3 A;  1XGO A;  3ROR A;  2BWY A;  2BH3 A;  2Q96 A;  3IU7 A;  2OKN A;  2GTX A;  3S6B A;  4U6Z A;  2BWT A;  3PKD A;  2EVM A;  3OVK A;  4FO8 A;  2BWV A;  2GG3 A;  2GG9 A;  1Y1N A;  5CNX A;  1QZY A;  2GGC A;  5FCH A;  1WL9 A;  4FLJ A;  3BIT A;  2EVC A;  1W2M A;  1BOA A;  2V3Y A;  3BIQ A;  4MAT A;  3L7G A;  3PKA A;  2GU5 A;  1W7V A;  5D6F A;  1JAW A;  2Q92 A;  3D27 A;  3FM3 A;  3QOC A;  2GA2 A;  4RZY A;  2GG2 A;  2GU4 A;  4RZZ A;  4ZWP A;  1XNZ A;  4PV4 A;  2Q94 A;  1N51 A;  5CLS A;  2DFI A;  3PEB A;  2GZ5 A;  1WY2 A;  4B28 A;  4ZNG A;  5JFR A;  2IW2 A;  4JUQ A;  4FO7 A;  3I7M A;  4IKS A;  1M35 A;  4U6J A;  2GG7 A;  3TB5 A;  1A16 A;  4A6V A;  4U71 A;  3PKC A;  2GU6 A;  1BN5 A;  1XGS A;  3PN9 A;  1KQ9 A;  5CDL A;  4IPA A;  2P98 A;  4S2T P;  4IEC A;  4U73 A;  1KP0 A;  2V3Z A;  4PNC A;  2V3X A;  4U6C A;  1QXY A;  2Q8K A;  3MR1 A;  4FLL A;  2P9A A;  5CIK A;  2BHA A;  2GU7 A;  3CB6 A;  5CE6 A;  2BWW A;  1YW9 A;  1WBQ A;  5D6E A;  2EA2 A;  2GGB A;  1MAT A;  4IF7 A;  4QR8 A;  1YVM A;  4IU6 A;  4EGE A;  1WKM A;  3MAT A;  4A6W A;  5CDE A;  1B59 A;  4FKC A;  3OOO A;  3FMQ A;  3CTZ A;  3PKE A;  3MX6 A;  1PV9 A;  1C23 A;  4RGZ 1;  2BN7 A;  1KQ0 A;  3TAV A;  2HOW A;  2Q95 A;  3IU8 A;  2BB7 A;  2GG8 A;  2B3L A;  1QXZ A;  4S01 A;  2GG5 A;  2NQ7 A;  2V6C A;  1R5H A;  1WLR A;  1R58 A;  1XGM A;  4U6E A;  1XGN A;  1YW7 A;  5CDV A;  4HXX A;  1O0X A;  1CHM A;  1R5G A;  2P99 A;  4U1B A;  3O5V A;  2GG0 A;  4R60 A;  4U69 A;  2ZSG A;  4U6W A;  4IKT A;  4S00 A;  4U70 A;  1YJ3 A;  1C27 A; 
#chains in the Genus database with same CATH homology
 2BWU A;  3PKB A;  4S2R P;  1C24 A;  3IU9 A;  4IKR A;  5JHU A;  4FLK A;  3RVA A;  1QXW A;  2B3H A;  2EA4 A;  2BHC A;  1WL6 A;  2Q93 A;  4Z7M A;  3IL0 A;  5FCF A;  1YW8 A;  4ZWU A;  2BWS A;  1B6A A;  4U76 A;  3BIP A;  3FMR A;  3CB5 A;  4ZWO A;  2OAZ A;  5E2C A;  1C22 A;  4FUK A;  4OOK A;  5E5B A;  3L24 A;  2ADU A;  3Q6D A;  4FLI A;  2G6P A;  4IDY A;  2EVO A;  2BWX A;  5JI6 A;  2MAT A;  1WN1 A;  2NQ6 A;  2B3K A;  1C21 A;  2BHD A;  4U75 A;  4IKU A;  3IG4 A;  2BHB A;  4KM3 A;  1XGO A;  3ROR A;  2BWY A;  2BH3 A;  2Q96 A;  3IU7 A;  2OKN A;  2GTX A;  3S6B A;  4U6Z A;  2BWT A;  3PKD A;  2EVM A;  3OVK A;  4FO8 A;  2BWV A;  2GG3 A;  2GG9 A;  1Y1N A;  5CNX A;  1QZY A;  2GGC A;  5FCH A;  1WL9 A;  4FLJ A;  3BIT A;  2EVC A;  1W2M A;  1BOA A;  2V3Y A;  3BIQ A;  4MAT A;  3L7G A;  3PKA A;  2GU5 A;  1W7V A;  5D6F A;  1JAW A;  2Q92 A;  3D27 A;  3FM3 A;  3QOC A;  2GA2 A;  4RZY A;  2GG2 A;  2GU4 A;  4RZZ A;  4ZWP A;  1XNZ A;  4PV4 A;  2Q94 A;  1N51 A;  5CLS A;  2DFI A;  3PEB A;  2GZ5 A;  1WY2 A;  4B28 A;  4ZNG A;  5JFR A;  2IW2 A;  4JUQ A;  4FO7 A;  3I7M A;  4IKS A;  1M35 A;  4U6J A;  2GG7 A;  3TB5 A;  1A16 A;  4A6V A;  4U71 A;  3PKC A;  2GU6 A;  1BN5 A;  1XGS A;  3PN9 A;  1KQ9 A;  5CDL A;  4IPA A;  2P98 A;  4S2T P;  4IEC A;  4U73 A;  1KP0 A;  2V3Z A;  4PNC A;  2V3X A;  4U6C A;  1QXY A;  2Q8K A;  3MR1 A;  4FLL A;  2P9A A;  5CIK A;  2BHA A;  2GU7 A;  3CB6 A;  5CE6 A;  2BWW A;  1YW9 A;  1WBQ A;  5D6E A;  2EA2 A;  2GGB A;  1MAT A;  4IF7 A;  4QR8 A;  1YVM A;  4IU6 A;  4EGE A;  1WKM A;  3MAT A;  4A6W A;  5CDE A;  1B59 A;  4FKC A;  3OOO A;  3FMQ A;  3CTZ A;  3PKE A;  3MX6 A;  1PV9 A;  1C23 A;  4RGZ 1;  2BN7 A;  1KQ0 A;  3TAV A;  2HOW A;  2Q95 A;  3IU8 A;  2BB7 A;  2GG8 A;  2B3L A;  1QXZ A;  4S01 A;  2GG5 A;  2NQ7 A;  2V6C A;  1R5H A;  1WLR A;  1R58 A;  1XGM A;  4U6E A;  1XGN A;  1YW7 A;  5CDV A;  4HXX A;  1O0X A;  1CHM A;  1R5G A;  2P99 A;  4U1B A;  3O5V A;  2GG0 A;  4R60 A;  4U69 A;  2ZSG A;  4U6W A;  4IKT A;  4S00 A;  4U70 A;  1YJ3 A;  1C27 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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