5JMD | Genus

Total Genus 204

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	204
sequence length	646
structure length	645
Chain Sequence	GSQELKSEVFSLLNLDYPGLEKVKALHQEGKDEDAAALLDYYRARTNVKTPDINLKKITIGKEEQQWADDGLKHTFFVHKGYQPSYNYGEDINWQYWPVKDNELRWQLHRHKWFTPMGKAYRVSGDEKYAKEWAYQYIDWIKKNPLVKMDKKEYELVSDGKIKGEVENVRFAWRPLEVSNRLQDQTTQFQLFLPSPSFTPDFLTEFLVNYHKHAVHILANYSDQGNHLLFEAQRMIYAGAFFPEFKEAPAWRKSGIDILNREVNVQVYNDGGQFELDPHYHLAAINIFCKALGIADVNGFRNEFPQEYLDTIEKMIMFYANISFPDYTNPCFSDAKITEKKEMLKNYRAWSKLFPKNETIKYLATDGKEGALPDYMSKGFLKSGFFVFRNSWGMDATQMVVKAGPKGFWHCQPDNGTFEMWFNGKNLFPDSGSYVYAGEGEVMEQRNWHRQTSVHNTVTLDNKNLETTESVTKLWQPEGNIQTLVTENPSYKNFKHRRSVFFVDNTYFVIVDEVSGSAKGSVNLHYQMPKGEIANSREDMTFLTQFEDGSNMKLQCFGPEGMSMKKEPGWCSTAYRKRYKRMNVSFNVKKDNENAVRYITVIYPVKKSADAPKFDAKFKNKTFDENGLEIEVKVNGKKQSLKYKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__1773603379200663__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__1773603379200663__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/5jmd/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__1773603379200663__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"1773603379200663","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/5jmd/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__1773603379200663__ ready

script 1 started

platformSpeed = 8

Viewer cachePut cache://localLOAD_/file/5d0e334756ae3462f4c0b07e/pdb.gz

Viewer cachePut https://genus.fuw.edu.pl/file/5d0e334756ae3462f4c0b07e/pdb.gz

FileManager.getAtomSetCollectionFromFile(/file/5d0e334756ae3462f4c0b07e/pdb.gz)

loadScript /static/js/j2s/core/corezip.z.js

The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5d0e334756ae3462f4c0b07e/pdb.gz): 1193 ms

reading 645 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

645 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 63 ms

Adding embedded #jmolscript: select ({0:644});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Lyase
source organism	Bacteroides thetaiotaomicron
publication title	Conformational flexibility of PL12 family heparinases: structure and substrate specificity of heparinase III from Bacteroides thetaiotaomicron (BT4657). pubmed doi rcsb
molecule keywords	Heparinase III protein
total genus	204
structure length	645
sequence length	646
ec nomenclature
pdb deposition date	2016-04-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07940	Hepar_II_III	Heparinase II/III-like protein
A	PF16889	Hepar_II_III_N	Heparinase II/III N-terminus

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.50.10.100	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Chondroitin AC/alginate lyase	5jmdA01
2.70.98.70	Mainly Beta	Distorted Sandwich	Beta-galactosidase; Chain A, domain 5	Beta-galactosidase; Chain A, domain 5	5jmdA02

1N7OA 1OJMA 1C82A 1X1JA 2E24A 3E80A 1CB8A 1LXKA 1RWCA 1OJPA 1RWGA 1X1HA 4OZVA 2FUQA 1QAZA 1HM3A 1W3YA 3E7JA 4NEIA 4OK2A 1RWHA 2X03A 1J0NA 1N7QA 5JMDA 1HMWA 3A0OA 2WCOA 3NFVA 4MMIA 1X1IA 3VSNA 2FUTA 2WDAA 1OJNA 3AFLA 4E1YA 1HV6A 1RWAA 1N7PA 2BRPA 4F13A 5JMFA 2BRWA 1OJOA 3NNBA 1F9GA 1LXMA 1HMUA 2BRVX 4MMHA 1HN0A 1EGUA 4F10A 2E22A 4FNVA 1LOHA 4OJZA 3VSMA 1J0MA 2Q1FA 1N7RA 1HM2A 1N7NA 1RW9A 1RWFA 4OZWA 1F1SA 4OK4A 1I8QA
chains in the Genus database with same CATH superfamily

3EJSA 1JZ2A 3AMOB 1X1JA 4K35A 1N94B 3BVWA 1CB8A 1RWCA 1FCEA 4DUVA 3M75A 4DOEA 1KFGA 4GTOB 3M76A 4ZG8A 1AYXA 2PNCA 3Q73B 2WGQA 3AFLA 2RI8A 4DI5A 2WVXA 1H3CA 1XWTA 1W6CA 3LVTA 3T0AA 3X42A 1L7JA 2DRRA 1S64B 2EADA 4WVCA 1KZOB 1HN0A 3M7BA 1JCQB 4DUXA 3BVXA 4ONTA 2CQSA 3PYBA 2OW7A 1KRFA 3VSMA 3KN4A 1DP0A 3DX4A 4GTMB 1OJMA 1UI8A 1C82A 1V7WA 4GTPB 1NL4B 2NVPA 2WIIB 3WC3A 1KZPB 1PX3A 1MMYA 1KWFA 2FBAA 3NREA 5IKAA 1N4PB 2BEDB 2B4FA 1QAFA 1RWHA 1N1ZA 4D94A 1N7QA 2DRSA 5CA3A 3VDBA 2CWVA 3DDFA 2WYIA 4UFCA 4XUVA 1Z45A 3VD9A 2ZZRA 3HIIA 3I3BA 4EV2A 3QFYA 1GXMA 1LF9A 4ZH5A 4C1SA 1SA4B 2WY7A 3SFYB 1R34A 1JYNA 3E30B 3QSPA 3EU5B 1D6ZA 1F1SA 4OK4A 2ALWA 3Q1NA 4TXTA 3WIQA 3WVFA 2E24A 1FBOA 5ILHA 3OXUA 1AV4A 3MI6A 3P2CA 1IS9A 4NEIA 3E7JA 4ZH1A 5EAUA 3EQAA 3EJUA 1TNOB 2P0VA 3NJVA 3WKGA 1HWWA 2BT3A 3VDAA 3VSNA 1X1IA 3QXQA 1N20A 1MZCB 3VD4A 1YGAA 3HIGA 3W7WA 1G87A 1H35A 3E6UA 4V1SA 5GY3A 3WA2X 3G4DA 2OKXA 1N4RB 3KSLB 3S4CA 4DUWA 2FYVA 4D4BA 3I3DA 1DL2A 1WU6A 5ILZA 3WKFA 1QBQB 3PZ4B 1L1YA 3DSTB 1NSVA 4GTTB 1CLCA 1H14A 3GT5A 3DCDA 1W3YA 4FNPA 3PZ2B 1FBWA 1WU5A 3DYMA 3D4ZA 3RRSA 2F7OA 2WVYA 1O6HA 5JMDA 5MEHA 2XSGA 2G0DA 3N9HA 3X40A 1O6RA 2VN4A 1TN6B 4GTVB 5ILIA 1WMNA 2HTBA 2BRVX 4K3AA 3BVUA 1F9OA 2EABA 3MWXA 3T0BA 4BTYA 1O7DD 3MUY1 4CE7A 4FNVA 1G9JA 2F0YB 2BBCA 3M00A 1IVWA 1NSSA 3SX1A 1FO3A 3DYPA 4WVAA 1AGMA 1GAHA 1WMOA 1RWGA 5KBPA 1H39A 1NS4A 5IK0A 1KS8A 1KSCA 1SIHA 1NI1B 3W7XA 1K1YA 2JKAA 1TNUB 3X3YA 3LOYA 3NFVA 1KSIA 2CIQA 4FNQA 3GLYA 2WDAA 4ZRQA 3QT3A 3OEDA 5IM1A 4AYRA 5JMFA 1QWNA 2Y73A 3ON6A 3D52A 1JCSB 3RJ3A 5KKBA 3NNBA 5JPNB 1QALA 3BUDA 3OBAA 3ACTA 1LD7B 3E37B 3ANJA 2WZSA 2CFKA 3QPFA 1QAKA 3G4FA 2WW0A 1HM2A 2WYHA 1JYVA 3ACSA 3H2WA 3S4AA 2BB6A 3NJXA 1DOGA 3KQ4A 4BTXA 5IL8A 1N7OA 2D73A 4FNUA 2D1WA 4DODA 4D4AA 1IQYA 1N4SB 1LURA 2ONHA 1ULVA 4MU9A 1A2VA 5CZLA 3T2QA 4KFEA 2X03A 3WIWA 1H3AA 5FO9B 4MMIA 1QQFA 1TN8B 4KKJA 3X3ZA 1HV6A 3N0GA 1JRQA 4V1RA 5C05A 2Y74A 4F13A 4GTRB 3SDUA 1OJOA 1WZZA 1F9GA 1JS4A 2BB5A 2QNOA 1HX9A 4D4CA 4MMHA 3CZNA 2E22A 1IVUA 2G02A 4JJJA 1IVVA 2YFOA 1NXCA 5AGDA 3DECA 2JG0A 3EU8A 1DYUA 4AYPA 4BZHA 5EASA 2XN2A 2DRQA 3E80A 2ZL8A 1PX4A 1UMPA 1X1HA 3IMHA 2C10A 1HXKA 1SIIA 1IVXA 1PU4A 2CWTA 1K1XA 1GXOA 1D8EB 3CU7A 3HXEB 3HXCB 1W6KA 3H3KA 3P5RA 1NS8A 3BGAA 1O5MB 4GTQB 2WOHA 3ECQA 1N7PA 2R2LB 2CFDA 2BRWA 1R76A 3CIHA 3BS6A 1G6IA 2WW1A 2YIKA 4CJ0A 1H37A 3T0UA 1W6JA 1C3DA 3M7CA 1D6UA 2WO0A 3T08A 1TXKA 3DSUB 1H54A 1XWQA 1N7NA 2JJBA 5ILYA 1TQUA 1F9DA 3D3IA 3H7LA 2F1BA 3D50A 2E2UA 3BVTA 1HTYA 1N95B 3HXBB 4ZRPA 1JYWA 1GSZA 3VDCA 2V3NA 3BUQA 4BOJA 2FV0A 3D5SA 4TF4A 4AYOA 1F4AA 1N4QB 1LF6A 2IEJB 1L7KA 4LIXA 4FXGB 1PS3A 3QDEA 1FT2B 2AHFA 1N1BA 1D6YA 3VD7A 3QT9A 2B39A 1FO2A 2JKPA 2BRPA 3WA3A 1NSXA 3PMMA 2WINB 2F7RA 3TF4A 1MMXA 3A3VA 1JYXA 2AFAA 2SQCA 1MMZA 1V5CA 2WYNA 2Q1FA 1N7RA 1IA6A 2F6DA 3SQCA 4OZWA 2GZ6A 5E2JA 3VD5A 1I8QA 1AVLA 2XN1A 3DRAB 4Q2BA 1LXKA 1JZ8A 3DDGA 3DSSB 1JZ6A 3DX3A 1O1RB 3DX1A 3HXFB 2WW2A 1K1WA 3T0DA 2A73B 1N9EA 2AHGA 3AFJA 4FNSA 4J5TA 1G9GA 2FV1A 4AQ0A 2CFLA 1LVNA 3N0FA 3RSYA 5FOBB 5JPMB 1JZ5A 2GOXA 3M01A 1K72A 4FUSA 1H3BA 2GH4A 1IA7A 1FP3A 3D51A 5M7IA 1RKYA 1US1A 1O79A 1EKMA 5GW7A 4QT9A 3SAEA 1W2ZA 3QRYA 5CD2A 4EL8A 4WVBA 3QWTA 1NS7A 4AYQA 2V8JA 3RX8A 4Z4LA 1V7VA 3RENA 4FNRA 1X9DA 1QSJA 3KIIA 1KKTA 3T09A 1SQCA 4RNQA 1UT9A 1HCUA 1R33A 3M7LA 3MV01 2WY8A 3BUBA 4FNTA 3ANIA 2ONGA 1TQSA 2ZQ0A 1JZ7A 3X41A 1EGUA 1TN7B 4L6XA 2C11A 3T33A 1TF4A 1GLMA 2E2TA 3T2OA 3D4YA 3BUIA 2A8ZA 3NBJA 3HI7A 2F1AA 3DSVB 2XWBB 3EJQA 4L0GA 2H6GB 2WVXB 3T2PA 1SNZA 1GHQA 1YQ2A 2ZXQA 1GAIA 5IL3A 3EUVB 2PN5A 1H13A 3P5PA 2EAEA 2OOVC 3EJTA 3DYOA 3KLSA 2XWJB 2VN7A 4KTRA 1TNBB 3SDTA 3QXFA 1TQVA 5IKHA 3PZ3B 2YFNA 2PMVA 4GAXA 1L2AA 1HXCA 2EACA 3K5TA 3WUXA 2F7PA 3S4DA 3S4BA 2CG1A 3DPYB 3WKIA 3M77A 3C72B 3LZ9A 5EATA 1CEMA 3DX2A 3SFXB 1RWFA 3E1F1 2D5JA 1NC5A 4YDEB 5ILJA 3KSQB 1NSZA 2HTAA 3D5RA 4LNVA 2V8KA 2FUQA 3K7XA 1IU7A 3IAQA 1HM3A 4OK2A 1RJOA 1QWUA 1WU4A 1TQTA 1J0NA 3VXDA 5IK9A 1HMWA 3AMOA 4E1YA 3SDRA 2E2VA 3ANKA 5DGRA 1LD8B 3G6JB 4LNGB 1W4NA 1HXGA 2V8IA 2H6FB 2W0QA 2V3PA 3PYAA 4KKIA 3BLCA 3DSWB 4KTPA 3Q75B 1AVKA 3DX0A 3MPHA 3X17A 3DSXB 1J0MA 3EJPA 1SA5B 3NBBA 3OB8A 2Z07A 2XQWA 3PGBA 1W6GA 1MMUA 3M02A 4GTSB 4MBGB 1N9AB 2CFWA 2WW3A 1HXAA 3IAPA 2OQEC 1V5DA 2ZBLA 3BVVA 3CZSA 1S63B 2WCOA 4TTGA 1JOVA 1TNYB 3S9VA 1WMPA 3M72A 3M73A 2JF4A 2NOJA 1TU5A 3Q7FB 1HMUA 1NS0A 1JCRB 1V7XA 4F10A 4LNBB 1IQXA 3SXXA 1KSDA 1JZ3A 4FXKB 2OOVA 2D8LA 1LTXB 1LOHA 1SO0A 2RI9A 2DROA 3ALAA 1F4HA 4CJ1A 1NS2A 3A24A 3SEPA 5DGQA 4KFFA 1W7CA 4D4DA 4OZVA 4BZFA 1NSRA 1QAZA 1NKGA 3E34B 1RQ5A 1N21A 2XFGA 4L9PB 1TNZB 4WU0A 3QFZA 1H36A 4YDOB 4Z4JA 2ZIRB 3SDQA 3W5MA 3W7SA 1JZ4A 5FO8B 2FUTA 1HZFA 1FPPB 2I07B 5DHIA 3M74A 1SPUA 2CIRA 3CZJA 1LXMA 3MV11 1FT1B 3WIRA 1KREA 1UI7A 1FAEA 1QX1A 4M76A 4FJQA 3M71A 2H6IB 4BTWA 4OJZA 3Q79B 1VD5A 3RX7A 2CG0A 1OACA 1X81B 2YX9A 2JKEA 2RDYA 3W7TA 4KFDA 1TQWA 2WVZA 1D8DB 3X3XA 3BLBA 3CV5A 3HXDB 3TY1A 5IK6A 3M78A 3QG0A 3BUPA 1XW2A 2J5CA 5ILKA 3A0OA 3MUZ1 1OJNA 3WKHA 4GL3A 2CWUA 2FUZA 3PZ1B 2OQEA 5GZKA 3J7HA 1O1TB 1UG9A 1O6QA 2F18A 4BZEA 3VW5A 3W5NA 2F7QA 3SDVA 3Q78B 1HN1A 4Q88A 2XN0A 2WOFA 3EJRA 3GZKA 2CFGA 3VD3A 5FO7B 5DHKA 4BZGA 3RX5A 1OJPA 3E32B 3K11A 3W7UA 2H6HB 1GXNA 5M7YA 3I3EA 5E1QA 5A1AA 1GA2A 1NSMA 3Q7AB 2OW6A 3EZ8A 1MN0A 3K25A 1N22A 1RWAA 2CQTA 4EV5A 3M7EA 4YCRA 1N24A 1NSUA 4BOKA 1W5ZA 3E73A 4RNLA 4EHMB 1DCEB 5ILDA 1O1SB 2XHNA 3WFAA 1FMIA 2RGKA 2ZISB 1N23A 1RW9A 3E33B 2CISA 1H12A 3OS7A
chains in the Genus database with same CATH topology

1JZ2A 1X1JA 3DYPA 1CB8A 1LXKA 1RWCA 2WW3A 1JZ8A 1RWGA 3IAPA 4DUVA 1JZ6A 1NS4A 1K1YA 2JKAA 2WW2A 1K1WA 4TTGA 2WCOA 3NFVA 2CIQA 1JOVA 3T0DA 2WDAA 3AFLA 2WVXA 3T0AA 4J5TA 5JMFA 1NSSA 4AQ0A 3NNBA 1L7JA 3OBAA 1HMUA 1NS0A 1HN0A 1JZ5A 4F10A 4DUXA 2WZSA 1JZ3A 1LOHA 3VSMA 1SO0A 2WW0A 1HM2A 1JYVA 1DP0A 1F4HA 1NS2A 3A24A 3NJXA 3SEPA 1N7OA 1OJMA 1C82A 1NS7A 2D73A 1PX3A 4OZVA 4BZFA 1NSRA 1MMYA 1QAZA 1LURA 1NKGA 3NREA 1ULVA 3T2QA 3T09A 1RWHA 2X03A 1N7QA 1JZ4A 3VDBA 4MMIA 2FUTA 1HV6A 3MV01 4F13A 2ZQ0A 1OJOA 1Z45A 2CIRA 3VD9A 1F9GA 3CZJA 1LXMA 1JZ7A 3I3BA 3MV11 4MMHA 1EGUA 2E22A 1LF9A 1JYNA 4OJZA 3DECA 3OS7A 4BZHA 1F1SA 4OK4A 2JKEA 3Q1NA 3WVFA 3E80A 2E24A 2WVZA 1PX4A 1X1HA 2WVXB 3IMHA 1SNZA 3T2PA 1YQ2A 2ZXQA 4NEIA 3E7JA 3TY1A 1K1XA 3NJVA 3VDAA 3DYOA 3A0OA 3VSNA 1X1IA 3MUZ1 1OJNA 1NS8A 3BGAA 3ECQA 1N7PA 3VD4A 1YGAA 2BRWA 3BS6A 3T2OA 2WW1A 1UG9A 3J7HA 3T08A 4BZEA 1TXKA 1N7NA 4DUWA 1RWFA 3E1F1 3I3DA 1HN1A 1NSZA 2HTAA 3VD3A 4BZGA 1NSVA 1OJPA 1JYWA 3VDCA 2FUQA 3DCDA 3I3EA 3IAQA 5A1AA 1HM3A 5E1QA 1W3YA 1F4AA 4OK2A 3DYMA 1L7KA 1LF6A 1NSMA 2WVYA 1J0NA 5JMDA 1HMWA 2XSGA 1MN0A 3K25A 4E1YA 3VD7A 1RWAA 1NSUA 2JKPA 2BRPA 4RNLA 1NSXA 2HTBA 2BRVX 2XHNA 3BLCA 1MMXA 3WFAA 1JYXA 3T0BA 1MMZA 3MUY1 4FNVA 1J0MA 2Q1FA 1N7RA 1RW9A 4OZWA 3OB8A 2CISA 3MWXA 3VD5A 1MMUA 1I8QA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1N7O A;  1OJM A;  1C82 A;  1X1J A;  2E24 A;  3E80 A;  1CB8 A;  1LXK A;  1RWC A;  1OJP A;  1RWG A;  1X1H A;  4OZV A;  2FUQ A;  1QAZ A;  1HM3 A;  1W3Y A;  3E7J A;  4NEI A;  4OK2 A;  1RWH A;  2X03 A;  1J0N A;  1N7Q A;  5JMD A;  1HMW A;  3A0O A;  2WCO A;  3NFV A;  4MMI A;  1X1I A;  3VSN A;  2FUT A;  2WDA A;  1OJN A;  3AFL A;  4E1Y A;  1HV6 A;  1RWA A;  1N7P A;  2BRP A;  4F13 A;  5JMF A;  2BRW A;  1OJO A;  3NNB A;  1F9G A;  1LXM A;  1HMU A;  2BRV X;  4MMH A;  1HN0 A;  1EGU A;  4F10 A;  2E22 A;  4FNV A;  1LOH A;  4OJZ A;  3VSM A;  1J0M A;  2Q1F A;  1N7R A;  1HM2 A;  1N7N A;  1RW9 A;  1RWF A;  4OZW A;  1F1S A;  4OK4 A;  1I8Q A; 
#chains in the Genus database with same CATH topology
 3EJS A;  1JZ2 A;  3AMO B;  1X1J A;  4K35 A;  1N94 B;  3BVW A;  1CB8 A;  1RWC A;  1FCE A;  4DUV A;  3M75 A;  4DOE A;  1KFG A;  4GTO B;  3M76 A;  4ZG8 A;  1AYX A;  2PNC A;  3Q73 B;  2WGQ A;  3AFL A;  2RI8 A;  4DI5 A;  2WVX A;  1H3C A;  1XWT A;  1W6C A;  3LVT A;  3T0A A;  3X42 A;  1L7J A;  2DRR A;  1S64 B;  2EAD A;  4WVC A;  1KZO B;  1HN0 A;  3M7B A;  1JCQ B;  4DUX A;  3BVX A;  4ONT A;  2CQS A;  3PYB A;  2OW7 A;  1KRF A;  3VSM A;  3KN4 A;  1DP0 A;  3DX4 A;  4GTM B;  1OJM A;  1UI8 A;  1C82 A;  1V7W A;  4GTP B;  1NL4 B;  2NVP A;  2WII B;  3WC3 A;  1KZP B;  1PX3 A;  1MMY A;  1KWF A;  2FBA A;  3NRE A;  5IKA A;  1N4P B;  2BED B;  2B4F A;  1QAF A;  1RWH A;  1N1Z A;  4D94 A;  1N7Q A;  2DRS A;  5CA3 A;  3VDB A;  2CWV A;  3DDF A;  2WYI A;  4UFC A;  4XUV A;  1Z45 A;  3VD9 A;  2ZZR A;  3HII A;  3I3B A;  4EV2 A;  3QFY A;  1GXM A;  1LF9 A;  4ZH5 A;  4C1S A;  1SA4 B;  2WY7 A;  3SFY B;  1R34 A;  1JYN A;  3E30 B;  3QSP A;  3EU5 B;  1D6Z A;  1F1S A;  4OK4 A;  2ALW A;  3Q1N A;  4TXT A;  3WIQ A;  3WVF A;  2E24 A;  1FBO A;  5ILH A;  3OXU A;  1AV4 A;  3MI6 A;  3P2C A;  1IS9 A;  4NEI A;  3E7J A;  4ZH1 A;  5EAU A;  3EQA A;  3EJU A;  1TNO B;  2P0V A;  3NJV A;  3WKG A;  1HWW A;  2BT3 A;  3VDA A;  3VSN A;  1X1I A;  3QXQ A;  1N20 A;  1MZC B;  3VD4 A;  1YGA A;  3HIG A;  3W7W A;  1G87 A;  1H35 A;  3E6U A;  4V1S A;  5GY3 A;  3WA2 X;  3G4D A;  2OKX A;  1N4R B;  3KSL B;  3S4C A;  4DUW A;  2FYV A;  4D4B A;  3I3D A;  1DL2 A;  1WU6 A;  5ILZ A;  3WKF A;  1QBQ B;  3PZ4 B;  1L1Y A;  3DST B;  1NSV A;  4GTT B;  1CLC A;  1H14 A;  3GT5 A;  3DCD A;  1W3Y A;  4FNP A;  3PZ2 B;  1FBW A;  1WU5 A;  3DYM A;  3D4Z A;  3RRS A;  2F7O A;  2WVY A;  1O6H A;  5JMD A;  5MEH A;  2XSG A;  2G0D A;  3N9H A;  3X40 A;  1O6R A;  2VN4 A;  1TN6 B;  4GTV B;  5ILI A;  1WMN A;  2HTB A;  2BRV X;  4K3A A;  3BVU A;  1F9O A;  2EAB A;  3MWX A;  3T0B A;  4BTY A;  1O7D D;  3MUY 1;  4CE7 A;  4FNV A;  1G9J A;  2F0Y B;  2BBC A;  3M00 A;  1IVW A;  1NSS A;  3SX1 A;  1FO3 A;  3DYP A;  4WVA A;  1AGM A;  1GAH A;  1WMO A;  1RWG A;  5KBP A;  1H39 A;  1NS4 A;  5IK0 A;  1KS8 A;  1KSC A;  1SIH A;  1NI1 B;  3W7X A;  1K1Y A;  2JKA A;  1TNU B;  3X3Y A;  3LOY A;  3NFV A;  1KSI A;  2CIQ A;  4FNQ A;  3GLY A;  2WDA A;  4ZRQ A;  3QT3 A;  3OED A;  5IM1 A;  4AYR A;  5JMF A;  1QWN A;  2Y73 A;  3ON6 A;  3D52 A;  1JCS B;  3RJ3 A;  5KKB A;  3NNB A;  5JPN B;  1QAL A;  3BUD A;  3OBA A;  3ACT A;  1LD7 B;  3E37 B;  3ANJ A;  2WZS A;  2CFK A;  3QPF A;  1QAK A;  3G4F A;  2WW0 A;  1HM2 A;  2WYH A;  1JYV A;  3ACS A;  3H2W A;  3S4A A;  2BB6 A;  3NJX A;  1DOG A;  3KQ4 A;  4BTX A;  5IL8 A;  1N7O A;  2D73 A;  4FNU A;  2D1W A;  4DOD A;  4D4A A;  1IQY A;  1N4S B;  1LUR A;  2ONH A;  1ULV A;  4MU9 A;  1A2V A;  5CZL A;  3T2Q A;  4KFE A;  2X03 A;  3WIW A;  1H3A A;  5FO9 B;  4MMI A;  1QQF A;  1TN8 B;  4KKJ A;  3X3Z A;  1HV6 A;  3N0G A;  1JRQ A;  4V1R A;  5C05 A;  2Y74 A;  4F13 A;  4GTR B;  3SDU A;  1OJO A;  1WZZ A;  1F9G A;  1JS4 A;  2BB5 A;  2QNO A;  1HX9 A;  4D4C A;  4MMH A;  3CZN A;  2E22 A;  1IVU A;  2G02 A;  4JJJ A;  1IVV A;  2YFO A;  1NXC A;  5AGD A;  3DEC A;  2JG0 A;  3EU8 A;  1DYU A;  4AYP A;  4BZH A;  5EAS A;  2XN2 A;  2DRQ A;  3E80 A;  2ZL8 A;  1PX4 A;  1UMP A;  1X1H A;  3IMH A;  2C10 A;  1HXK A;  1SII A;  1IVX A;  1PU4 A;  2CWT A;  1K1X A;  1GXO A;  1D8E B;  3CU7 A;  3HXE B;  3HXC B;  1W6K A;  3H3K A;  3P5R A;  1NS8 A;  3BGA A;  1O5M B;  4GTQ B;  2WOH A;  3ECQ A;  1N7P A;  2R2L B;  2CFD A;  2BRW A;  1R76 A;  3CIH A;  3BS6 A;  1G6I A;  2WW1 A;  2YIK A;  4CJ0 A;  1H37 A;  3T0U A;  1W6J A;  1C3D A;  3M7C A;  1D6U A;  2WO0 A;  3T08 A;  1TXK A;  3DSU B;  1H54 A;  1XWQ A;  1N7N A;  2JJB A;  5ILY A;  1TQU A;  1F9D A;  3D3I A;  3H7L A;  2F1B A;  3D50 A;  2E2U A;  3BVT A;  1HTY A;  1N95 B;  3HXB B;  4ZRP A;  1JYW A;  1GSZ A;  3VDC A;  2V3N A;  3BUQ A;  4BOJ A;  2FV0 A;  3D5S A;  4TF4 A;  4AYO A;  1F4A A;  1N4Q B;  1LF6 A;  2IEJ B;  1L7K A;  4LIX A;  4FXG B;  1PS3 A;  3QDE A;  1FT2 B;  2AHF A;  1N1B A;  1D6Y A;  3VD7 A;  3QT9 A;  2B39 A;  1FO2 A;  2JKP A;  2BRP A;  3WA3 A;  1NSX A;  3PMM A;  2WIN B;  2F7R A;  3TF4 A;  1MMX A;  3A3V A;  1JYX A;  2AFA A;  2SQC A;  1MMZ A;  1V5C A;  2WYN A;  2Q1F A;  1N7R A;  1IA6 A;  2F6D A;  3SQC A;  4OZW A;  2GZ6 A;  5E2J A;  3VD5 A;  1I8Q A;  1AVL A;  2XN1 A;  3DRA B;  4Q2B A;  1LXK A;  1JZ8 A;  3DDG A;  3DSS B;  1JZ6 A;  3DX3 A;  1O1R B;  3DX1 A;  3HXF B;  2WW2 A;  1K1W A;  3T0D A;  2A73 B;  1N9E A;  2AHG A;  3AFJ A;  4FNS A;  4J5T A;  1G9G A;  2FV1 A;  4AQ0 A;  2CFL A;  1LVN A;  3N0F A;  3RSY A;  5FOB B;  5JPM B;  1JZ5 A;  2GOX A;  3M01 A;  1K72 A;  4FUS A;  1H3B A;  2GH4 A;  1IA7 A;  1FP3 A;  3D51 A;  5M7I A;  1RKY A;  1US1 A;  1O79 A;  1EKM A;  5GW7 A;  4QT9 A;  3SAE A;  1W2Z A;  3QRY A;  5CD2 A;  4EL8 A;  4WVB A;  3QWT A;  1NS7 A;  4AYQ A;  2V8J A;  3RX8 A;  4Z4L A;  1V7V A;  3REN A;  4FNR A;  1X9D A;  1QSJ A;  3KII A;  1KKT A;  3T09 A;  1SQC A;  4RNQ A;  1UT9 A;  1HCU A;  1R33 A;  3M7L A;  3MV0 1;  2WY8 A;  3BUB A;  4FNT A;  3ANI A;  2ONG A;  1TQS A;  2ZQ0 A;  1JZ7 A;  3X41 A;  1EGU A;  1TN7 B;  4L6X A;  2C11 A;  3T33 A;  1TF4 A;  1GLM A;  2E2T A;  3T2O A;  3D4Y A;  3BUI A;  2A8Z A;  3NBJ A;  3HI7 A;  2F1A A;  3DSV B;  2XWB B;  3EJQ A;  4L0G A;  2H6G B;  2WVX B;  3T2P A;  1SNZ A;  1GHQ A;  1YQ2 A;  2ZXQ A;  1GAI A;  5IL3 A;  3EUV B;  2PN5 A;  1H13 A;  3P5P A;  2EAE A;  2OOV C;  3EJT A;  3DYO A;  3KLS A;  2XWJ B;  2VN7 A;  4KTR A;  1TNB B;  3SDT A;  3QXF A;  1TQV A;  5IKH A;  3PZ3 B;  2YFN A;  2PMV A;  4GAX A;  1L2A A;  1HXC A;  2EAC A;  3K5T A;  3WUX A;  2F7P A;  3S4D A;  3S4B A;  2CG1 A;  3DPY B;  3WKI A;  3M77 A;  3C72 B;  3LZ9 A;  5EAT A;  1CEM A;  3DX2 A;  3SFX B;  1RWF A;  3E1F 1;  2D5J A;  1NC5 A;  4YDE B;  5ILJ A;  3KSQ B;  1NSZ A;  2HTA A;  3D5R A;  4LNV A;  2V8K A;  2FUQ A;  3K7X A;  1IU7 A;  3IAQ A;  1HM3 A;  4OK2 A;  1RJO A;  1QWU A;  1WU4 A;  1TQT A;  1J0N A;  3VXD A;  5IK9 A;  1HMW A;  3AMO A;  4E1Y A;  3SDR A;  2E2V A;  3ANK A;  5DGR A;  1LD8 B;  3G6J B;  4LNG B;  1W4N A;  1HXG A;  2V8I A;  2H6F B;  2W0Q A;  2V3P A;  3PYA A;  4KKI A;  3BLC A;  3DSW B;  4KTP A;  3Q75 B;  1AVK A;  3DX0 A;  3MPH A;  3X17 A;  3DSX B;  1J0M A;  3EJP A;  1SA5 B;  3NBB A;  3OB8 A;  2Z07 A;  2XQW A;  3PGB A;  1W6G A;  1MMU A;  3M02 A;  4GTS B;  4MBG B;  1N9A B;  2CFW A;  2WW3 A;  1HXA A;  3IAP A;  2OQE C;  1V5D A;  2ZBL A;  3BVV A;  3CZS A;  1S63 B;  2WCO A;  4TTG A;  1JOV A;  1TNY B;  3S9V A;  1WMP A;  3M72 A;  3M73 A;  2JF4 A;  2NOJ A;  1TU5 A;  3Q7F B;  1HMU A;  1NS0 A;  1JCR B;  1V7X A;  4F10 A;  4LNB B;  1IQX A;  3SXX A;  1KSD A;  1JZ3 A;  4FXK B;  2OOV A;  2D8L A;  1LTX B;  1LOH A;  1SO0 A;  2RI9 A;  2DRO A;  3ALA A;  1F4H A;  4CJ1 A;  1NS2 A;  3A24 A;  3SEP A;  5DGQ A;  4KFF A;  1W7C A;  4D4D A;  4OZV A;  4BZF A;  1NSR A;  1QAZ A;  1NKG A;  3E34 B;  1RQ5 A;  1N21 A;  2XFG A;  4L9P B;  1TNZ B;  4WU0 A;  3QFZ A;  1H36 A;  4YDO B;  4Z4J A;  2ZIR B;  3SDQ A;  3W5M A;  3W7S A;  1JZ4 A;  5FO8 B;  2FUT A;  1HZF A;  1FPP B;  2I07 B;  5DHI A;  3M74 A;  1SPU A;  2CIR A;  3CZJ A;  1LXM A;  3MV1 1;  1FT1 B;  3WIR A;  1KRE A;  1UI7 A;  1FAE A;  1QX1 A;  4M76 A;  4FJQ A;  3M71 A;  2H6I B;  4BTW A;  4OJZ A;  3Q79 B;  1VD5 A;  3RX7 A;  2CG0 A;  1OAC A;  1X81 B;  2YX9 A;  2JKE A;  2RDY A;  3W7T A;  4KFD A;  1TQW A;  2WVZ A;  1D8D B;  3X3X A;  3BLB A;  3CV5 A;  3HXD B;  3TY1 A;  5IK6 A;  3M78 A;  3QG0 A;  3BUP A;  1XW2 A;  2J5C A;  5ILK A;  3A0O A;  3MUZ 1;  1OJN A;  3WKH A;  4GL3 A;  2CWU A;  2FUZ A;  3PZ1 B;  2OQE A;  5GZK A;  3J7H A;  1O1T B;  1UG9 A;  1O6Q A;  2F18 A;  4BZE A;  3VW5 A;  3W5N A;  2F7Q A;  3SDV A;  3Q78 B;  1HN1 A;  4Q88 A;  2XN0 A;  2WOF A;  3EJR A;  3GZK A;  2CFG A;  3VD3 A;  5FO7 B;  5DHK A;  4BZG A;  3RX5 A;  1OJP A;  3E32 B;  3K11 A;  3W7U A;  2H6H B;  1GXN A;  5M7Y A;  3I3E A;  5E1Q A;  5A1A A;  1GA2 A;  1NSM A;  3Q7A B;  2OW6 A;  3EZ8 A;  1MN0 A;  3K25 A;  1N22 A;  1RWA A;  2CQT A;  4EV5 A;  3M7E A;  4YCR A;  1N24 A;  1NSU A;  4BOK A;  1W5Z A;  3E73 A;  4RNL A;  4EHM B;  1DCE B;  5ILD A;  1O1S B;  2XHN A;  3WFA A;  1FMI A;  2RGK A;  2ZIS B;  1N23 A;  1RW9 A;  3E33 B;  2CIS A;  1H12 A;  3OS7 A; 
#chains in the Genus database with same CATH homology
 1JZ2 A;  1X1J A;  3DYP A;  1CB8 A;  1LXK A;  1RWC A;  2WW3 A;  1JZ8 A;  1RWG A;  3IAP A;  4DUV A;  1JZ6 A;  1NS4 A;  1K1Y A;  2JKA A;  2WW2 A;  1K1W A;  4TTG A;  2WCO A;  3NFV A;  2CIQ A;  1JOV A;  3T0D A;  2WDA A;  3AFL A;  2WVX A;  3T0A A;  4J5T A;  5JMF A;  1NSS A;  4AQ0 A;  3NNB A;  1L7J A;  3OBA A;  1HMU A;  1NS0 A;  1HN0 A;  1JZ5 A;  4F10 A;  4DUX A;  2WZS A;  1JZ3 A;  1LOH A;  3VSM A;  1SO0 A;  2WW0 A;  1HM2 A;  1JYV A;  1DP0 A;  1F4H A;  1NS2 A;  3A24 A;  3NJX A;  3SEP A;  1N7O A;  1OJM A;  1C82 A;  1NS7 A;  2D73 A;  1PX3 A;  4OZV A;  4BZF A;  1NSR A;  1MMY A;  1QAZ A;  1LUR A;  1NKG A;  3NRE A;  1ULV A;  3T2Q A;  3T09 A;  1RWH A;  2X03 A;  1N7Q A;  1JZ4 A;  3VDB A;  4MMI A;  2FUT A;  1HV6 A;  3MV0 1;  4F13 A;  2ZQ0 A;  1OJO A;  1Z45 A;  2CIR A;  3VD9 A;  1F9G A;  3CZJ A;  1LXM A;  1JZ7 A;  3I3B A;  3MV1 1;  4MMH A;  1EGU A;  2E22 A;  1LF9 A;  1JYN A;  4OJZ A;  3DEC A;  3OS7 A;  4BZH A;  1F1S A;  4OK4 A;  2JKE A;  3Q1N A;  3WVF A;  3E80 A;  2E24 A;  2WVZ A;  1PX4 A;  1X1H A;  2WVX B;  3IMH A;  1SNZ A;  3T2P A;  1YQ2 A;  2ZXQ A;  4NEI A;  3E7J A;  3TY1 A;  1K1X A;  3NJV A;  3VDA A;  3DYO A;  3A0O A;  3VSN A;  1X1I A;  3MUZ 1;  1OJN A;  1NS8 A;  3BGA A;  3ECQ A;  1N7P A;  3VD4 A;  1YGA A;  2BRW A;  3BS6 A;  3T2O A;  2WW1 A;  1UG9 A;  3J7H A;  3T08 A;  4BZE A;  1TXK A;  1N7N A;  4DUW A;  1RWF A;  3E1F 1;  3I3D A;  1HN1 A;  1NSZ A;  2HTA A;  3VD3 A;  4BZG A;  1NSV A;  1OJP A;  1JYW A;  3VDC A;  2FUQ A;  3DCD A;  3I3E A;  3IAQ A;  5A1A A;  1HM3 A;  5E1Q A;  1W3Y A;  1F4A A;  4OK2 A;  3DYM A;  1L7K A;  1LF6 A;  1NSM A;  2WVY A;  1J0N A;  5JMD A;  1HMW A;  2XSG A;  1MN0 A;  3K25 A;  4E1Y A;  3VD7 A;  1RWA A;  1NSU A;  2JKP A;  2BRP A;  4RNL A;  1NSX A;  2HTB A;  2BRV X;  2XHN A;  3BLC A;  1MMX A;  3WFA A;  1JYX A;  3T0B A;  1MMZ A;  3MUY 1;  4FNV A;  1J0M A;  2Q1F A;  1N7R A;  1RW9 A;  4OZW A;  3OB8 A;  2CIS A;  3MWX A;  3VD5 A;  1MMU A;  1I8Q A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

5JMDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations