1FZ1E

Methane monooxygenase hydroxylase, form iii oxidized
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site.
pubmed doi rcsb
molecule keywords METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN
total genus 60
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2000-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz1E01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz1E02
1XVBE 1FZ2E 1XVGE 1MTYG 1FZ8E 1FZ4E 1FZ6E 1FYZE 1FZ7E 1XU3E 1XMFE 4GAMC 1XVCE 1FZHE 1FZ3E 1MHYG 1XVFE 1FZIE 1XVDE 1MMOG 1FZ0E 1XVEE 1FZ9E 1XU5E 1XMGE 1FZ5E 1MHZG 1FZ1E 1XMHE
chains in the Genus database with same CATH superfamily
4E3SA 4AKHA 2YB5A 2JQTA 4ADOA 4DTSA 1P22A 3E4WA 3UO3A 1FZ2E 4FJMA 3LZJA 4AI6A 1XVGE 2OYQA 4EP9A 1WAFA 2P1PB 3SPYA 3QNNA 3SQ4A 2P5OA 4E4BA 4DU4A 4J2AA 1XVCE 2JPNA 1FZ3E 2MMBA 3K2OA 3NE6A 3KD1E 2DY4A 3L0MA 3OGLB 2OZSA 3TJYA 2B1EA 3QEVA 3J2PA 2ATQA 4DU1A 1MMOG 4M42A 3L1NA 3SVIA 3RMAA 3SJJA 4FJLA 4HCBA 4J2EA 1CLQA 3SQ1A 4KI6A 2P1OB 4KHYA 1LDKE 4AKGA 4FK4A 2RKHA 3L2OB 4J2DA 3C95A 1FS1A 4FJ9A 4JRPA 3NDKA 4FVMA 4FJXA 1XVBE 2DEBA 1FPOA 3HGLA 3LDBA 3TAFA 3SCXA 4RL5A 4EPHA 5IZ7A 1FZ6E 2JHPA 3C6NB 5IBKB 2B8IA 4M3RA 4M3WA 3SQ2A 4X5NA 2QXFA 3SQ0A 4FJ7A 3NCIA 4DTXA 4FJ8A 3SI6A 1XVFE 2E32A 3QNOA 2VJ4A 2JH8A 3KD5E 3N1BA 3UIQA 3TABA 4DTPA 3QEIA 3TAGA 1WAJA 4M41A 1FXXA 1Q9YA 1IH7A 4DTMA 1NEXB 1JW2A 2HD0A 4M45A 4J2BA 3SUPA 4JRQA 1FZ5E 1MHZG 1FZ1E 2JHAA 1N1CA 3NHGA 4I9QA 3HP9A 3LDSA 2DTUA 4HCCA 2RCUA 2OVPB 2E31A 2PFVA 1IG9A 1XL3C 4FK2A 3LD8A 3E4YA 1MTYG 1FZ8E 1FZ4E 3HGKE 1FYZE 1FZ7E 2LF3A 2PFTA 4JS5A 1Q9XA 4KHWA 3OGKB 3CQ8A 2JHCA 4M3ZA 3S9HA 4M3XA 4EYWA 2VIXA 4ADNA 3NAEA 4DTRA 2JH9A 3MKSB 3NGIA 3WSOA 4JS4A 3L8BA 1FZIE 4DTUA 4DTOA 3QERA 1XVDE 3TL8B 1FZ0E 1XVEE 4DU3A 3QEWA 1FZ9E 4FK0A 3TAEA 4KHNA 4DTJA 2VJ5A 3V7DB 3CFRA 3QETA 4FJJA 4KHUA 3C6OB 2FYOA 3RMDA 1XMHE 5IREA 4QNCA 2FW3A 2H4TA 2OZMA 4FJNA 4KHQA 5H37A 2P5GA 3BVOA 4ICGC 3SUNA 4AKIA 2B7MA 2LF6A 1XU3E 1XMFE 2MZWB 4GAMC 2P1NB 1FZHE 4DTNA 3RMCA 1MHYG 4I6JB 3SUOA 4FJKA 3SNNA 4M3TA 4KI4A 3OGMB 3SUQA 4RG8A 3HL8A 2K5SA 4M3UA 3J27A 4I9LA 3QEXA 4FJHA 4KHSA 4FJ5A 3UO2A 2MW2A 2OVQB 3LZIA 3CFPA 2P1MB 4FJIA 3C6PB 1XU5E 3N1EA 4IT5A 2P1QB 3SPZA 3QESA 3CFOA 3RMBA 4QNDA 4FJGA 1XMGE 3RWUA 3C94A 4RNGA 2OVRB 4X5MA 3QEPA 4B08A 4M3YA
chains in the Genus database with same CATH topology
4E3SA 4AKHA 2YB5A 4ADOA 4DTSA 1P22A 3E4WA 1FZ2E 4FJMA 3LZJA 4AI6A 1XVGE 2OYQA 4EP9A 1WAFA 2P1PB 3SPYA 3QNNA 3SQ4A 2P5OA 4E4BA 4DU4A 4J2AA 1XVCE 2JPNA 1FZ3E 2MMBA 3K2OA 3NE6A 3KD1E 2DY4A 3L0MA 3OGLB 2OZSA 3TJYA 2B1EA 3QEVA 3J2PA 2ATQA 4DU1A 1MMOG 4M42A 3L1NA 3SVIA 3RMAA 3SJJA 4FJLA 4HCBA 4J2EA 1CLQA 3SQ1A 4KI6A 2P1OB 4KHYA 1LDKE 4AKGA 4FK4A 3L2OB 4J2DA 3C95A 1FS1A 4FJ9A 4JRPA 3NDKA 4FVMA 4FJXA 1XVBE 2DEBA 3HGLA 3LDBA 3TAFA 3SCXA 4RL5A 4EPHA 5IZ7A 1FZ6E 2JHPA 3C6NB 5IBKB 2B8IA 4M3RA 4M3WA 3SQ2A 4X5NA 2QXFA 3SQ0A 4FJ7A 3NCIA 4DTXA 4FJ8A 3SI6A 1XVFE 2E32A 3QNOA 2VJ4A 2JH8A 3KD5E 3N1BA 3UIQA 3TABA 4DTPA 3QEIA 3TAGA 1WAJA 4M41A 1FXXA 1Q9YA 1IH7A 4DTMA 1NEXB 2HD0A 4M45A 4J2BA 3SUPA 4JRQA 1FZ5E 1MHZG 1FZ1E 2JHAA 3NHGA 4I9QA 3HP9A 3LDSA 4HCCA 2RCUA 2OVPB 2E31A 2PFVA 1IG9A 1XL3C 4FK2A 3LD8A 3E4YA 1MTYG 1FZ8E 1FZ4E 3HGKE 1FYZE 1FZ7E 2LF3A 2PFTA 4JS5A 1Q9XA 4KHWA 3OGKB 3CQ8A 2JHCA 4M3ZA 3S9HA 4M3XA 4EYWA 2VIXA 4ADNA 3NAEA 4DTRA 2JH9A 3MKSB 3NGIA 3WSOA 4JS4A 3L8BA 1FZIE 4DTUA 4DTOA 3QERA 1XVDE 3TL8B 1FZ0E 1XVEE 4DU3A 3QEWA 1FZ9E 4FK0A 3TAEA 4KHNA 4DTJA 2VJ5A 3V7DB 3CFRA 3QETA 4FJJA 4KHUA 3C6OB 2FYOA 3RMDA 1XMHE 5IREA 4QNCA 2FW3A 2H4TA 2OZMA 4FJNA 4KHQA 5H37A 2P5GA 3SUNA 4AKIA 2B7MA 2LF6A 1XU3E 1XMFE 2MZWB 4GAMC 2P1NB 1FZHE 4DTNA 3RMCA 1MHYG 4I6JB 3SUOA 4FJKA 3SNNA 4M3TA 4KI4A 3OGMB 3SUQA 4RG8A 3HL8A 4M3UA 3J27A 4I9LA 3QEXA 4FJHA 4KHSA 4FJ5A 2OVQB 3LZIA 3CFPA 2P1MB 4FJIA 3C6PB 1XU5E 3N1EA 2DTUA 2P1QB 3SPZA 3QESA 3CFOA 3RMBA 4QNDA 4FJGA 1XMGE 3RWUA 3C94A 4RNGA 2OVRB 4X5MA 3QEPA 4B08A 4M3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XVB E;  1FZ2 E;  1XVG E;  1MTY G;  1FZ8 E;  1FZ4 E;  1FZ6 E;  1FYZ E;  1FZ7 E;  1XU3 E;  1XMF E;  4GAM C;  1XVC E;  1FZH E;  1FZ3 E;  1MHY G;  1XVF E;  1FZI E;  1XVD E;  1MMO G;  1FZ0 E;  1XVE E;  1FZ9 E;  1XU5 E;  1XMG E;  1FZ5 E;  1MHZ G;  1FZ1 E;  1XMH E; 
#chains in the Genus database with same CATH topology
 4E3S A;  4AKH A;  2YB5 A;  2JQT A;  4ADO A;  4DTS A;  1P22 A;  3E4W A;  3UO3 A;  1FZ2 E;  4FJM A;  3LZJ A;  4AI6 A;  1XVG E;  2OYQ A;  4EP9 A;  1WAF A;  2P1P B;  3SPY A;  3QNN A;  3SQ4 A;  2P5O A;  4E4B A;  4DU4 A;  4J2A A;  1XVC E;  2JPN A;  1FZ3 E;  2MMB A;  3K2O A;  3NE6 A;  3KD1 E;  2DY4 A;  3L0M A;  3OGL B;  2OZS A;  3TJY A;  2B1E A;  3QEV A;  3J2P A;  2ATQ A;  4DU1 A;  1MMO G;  4M42 A;  3L1N A;  3SVI A;  3RMA A;  3SJJ A;  4FJL A;  4HCB A;  4J2E A;  1CLQ A;  3SQ1 A;  4KI6 A;  2P1O B;  4KHY A;  1LDK E;  4AKG A;  4FK4 A;  2RKH A;  3L2O B;  4J2D A;  3C95 A;  1FS1 A;  4FJ9 A;  4JRP A;  3NDK A;  4FVM A;  4FJX A;  1XVB E;  2DEB A;  1FPO A;  3HGL A;  3LDB A;  3TAF A;  3SCX A;  4RL5 A;  4EPH A;  5IZ7 A;  1FZ6 E;  2JHP A;  3C6N B;  5IBK B;  2B8I A;  4M3R A;  4M3W A;  3SQ2 A;  4X5N A;  2QXF A;  3SQ0 A;  4FJ7 A;  3NCI A;  4DTX A;  4FJ8 A;  3SI6 A;  1XVF E;  2E32 A;  3QNO A;  2VJ4 A;  2JH8 A;  3KD5 E;  3N1B A;  3UIQ A;  3TAB A;  4DTP A;  3QEI A;  3TAG A;  1WAJ A;  4M41 A;  1FXX A;  1Q9Y A;  1IH7 A;  4DTM A;  1NEX B;  1JW2 A;  2HD0 A;  4M45 A;  4J2B A;  3SUP A;  4JRQ A;  1FZ5 E;  1MHZ G;  1FZ1 E;  2JHA A;  1N1C A;  3NHG A;  4I9Q A;  3HP9 A;  3LDS A;  2DTU A;  4HCC A;  2RCU A;  2OVP B;  2E31 A;  2PFV A;  1IG9 A;  1XL3 C;  4FK2 A;  3LD8 A;  3E4Y A;  1MTY G;  1FZ8 E;  1FZ4 E;  3HGK E;  1FYZ E;  1FZ7 E;  2LF3 A;  2PFT A;  4JS5 A;  1Q9X A;  4KHW A;  3OGK B;  3CQ8 A;  2JHC A;  4M3Z A;  3S9H A;  4M3X A;  4EYW A;  2VIX A;  4ADN A;  3NAE A;  4DTR A;  2JH9 A;  3MKS B;  3NGI A;  3WSO A;  4JS4 A;  3L8B A;  1FZI E;  4DTU A;  4DTO A;  3QER A;  1XVD E;  3TL8 B;  1FZ0 E;  1XVE E;  4DU3 A;  3QEW A;  1FZ9 E;  4FK0 A;  3TAE A;  4KHN A;  4DTJ A;  2VJ5 A;  3V7D B;  3CFR A;  3QET A;  4FJJ A;  4KHU A;  3C6O B;  2FYO A;  3RMD A;  1XMH E;  5IRE A;  4QNC A;  2FW3 A;  2H4T A;  2OZM A;  4FJN A;  4KHQ A;  5H37 A;  2P5G A;  3BVO A;  4ICG C;  3SUN A;  4AKI A;  2B7M A;  2LF6 A;  1XU3 E;  1XMF E;  2MZW B;  4GAM C;  2P1N B;  1FZH E;  4DTN A;  3RMC A;  1MHY G;  4I6J B;  3SUO A;  4FJK A;  3SNN A;  4M3T A;  4KI4 A;  3OGM B;  3SUQ A;  4RG8 A;  3HL8 A;  2K5S A;  4M3U A;  3J27 A;  4I9L A;  3QEX A;  4FJH A;  4KHS A;  4FJ5 A;  3UO2 A;  2MW2 A;  2OVQ B;  3LZI A;  3CFP A;  2P1M B;  4FJI A;  3C6P B;  1XU5 E;  3N1E A;  4IT5 A;  2P1Q B;  3SPZ A;  3QES A;  3CFO A;  3RMB A;  4QND A;  4FJG A;  1XMG E;  3RWU A;  3C94 A;  4RNG A;  2OVR B;  4X5M A;  3QEP A;  4B08 A;  4M3Y A; 
#chains in the Genus database with same CATH homology
 4E3S A;  4AKH A;  2YB5 A;  4ADO A;  4DTS A;  1P22 A;  3E4W A;  1FZ2 E;  4FJM A;  3LZJ A;  4AI6 A;  1XVG E;  2OYQ A;  4EP9 A;  1WAF A;  2P1P B;  3SPY A;  3QNN A;  3SQ4 A;  2P5O A;  4E4B A;  4DU4 A;  4J2A A;  1XVC E;  2JPN A;  1FZ3 E;  2MMB A;  3K2O A;  3NE6 A;  3KD1 E;  2DY4 A;  3L0M A;  3OGL B;  2OZS A;  3TJY A;  2B1E A;  3QEV A;  3J2P A;  2ATQ A;  4DU1 A;  1MMO G;  4M42 A;  3L1N A;  3SVI A;  3RMA A;  3SJJ A;  4FJL A;  4HCB A;  4J2E A;  1CLQ A;  3SQ1 A;  4KI6 A;  2P1O B;  4KHY A;  1LDK E;  4AKG A;  4FK4 A;  3L2O B;  4J2D A;  3C95 A;  1FS1 A;  4FJ9 A;  4JRP A;  3NDK A;  4FVM A;  4FJX A;  1XVB E;  2DEB A;  3HGL A;  3LDB A;  3TAF A;  3SCX A;  4RL5 A;  4EPH A;  5IZ7 A;  1FZ6 E;  2JHP A;  3C6N B;  5IBK B;  2B8I A;  4M3R A;  4M3W A;  3SQ2 A;  4X5N A;  2QXF A;  3SQ0 A;  4FJ7 A;  3NCI A;  4DTX A;  4FJ8 A;  3SI6 A;  1XVF E;  2E32 A;  3QNO A;  2VJ4 A;  2JH8 A;  3KD5 E;  3N1B A;  3UIQ A;  3TAB A;  4DTP A;  3QEI A;  3TAG A;  1WAJ A;  4M41 A;  1FXX A;  1Q9Y A;  1IH7 A;  4DTM A;  1NEX B;  2HD0 A;  4M45 A;  4J2B A;  3SUP A;  4JRQ A;  1FZ5 E;  1MHZ G;  1FZ1 E;  2JHA A;  3NHG A;  4I9Q A;  3HP9 A;  3LDS A;  4HCC A;  2RCU A;  2OVP B;  2E31 A;  2PFV A;  1IG9 A;  1XL3 C;  4FK2 A;  3LD8 A;  3E4Y A;  1MTY G;  1FZ8 E;  1FZ4 E;  3HGK E;  1FYZ E;  1FZ7 E;  2LF3 A;  2PFT A;  4JS5 A;  1Q9X A;  4KHW A;  3OGK B;  3CQ8 A;  2JHC A;  4M3Z A;  3S9H A;  4M3X A;  4EYW A;  2VIX A;  4ADN A;  3NAE A;  4DTR A;  2JH9 A;  3MKS B;  3NGI A;  3WSO A;  4JS4 A;  3L8B A;  1FZI E;  4DTU A;  4DTO A;  3QER A;  1XVD E;  3TL8 B;  1FZ0 E;  1XVE E;  4DU3 A;  3QEW A;  1FZ9 E;  4FK0 A;  3TAE A;  4KHN A;  4DTJ A;  2VJ5 A;  3V7D B;  3CFR A;  3QET A;  4FJJ A;  4KHU A;  3C6O B;  2FYO A;  3RMD A;  1XMH E;  5IRE A;  4QNC A;  2FW3 A;  2H4T A;  2OZM A;  4FJN A;  4KHQ A;  5H37 A;  2P5G A;  3SUN A;  4AKI A;  2B7M A;  2LF6 A;  1XU3 E;  1XMF E;  2MZW B;  4GAM C;  2P1N B;  1FZH E;  4DTN A;  3RMC A;  1MHY G;  4I6J B;  3SUO A;  4FJK A;  3SNN A;  4M3T A;  4KI4 A;  3OGM B;  3SUQ A;  4RG8 A;  3HL8 A;  4M3U A;  3J27 A;  4I9L A;  3QEX A;  4FJH A;  4KHS A;  4FJ5 A;  2OVQ B;  3LZI A;  3CFP A;  2P1M B;  4FJI A;  3C6P B;  1XU5 E;  3N1E A;  2DTU A;  2P1Q B;  3SPZ A;  3QES A;  3CFO A;  3RMB A;  4QND A;  4FJG A;  1XMG E;  3RWU A;  3C94 A;  4RNG A;  2OVR B;  4X5M A;  3QEP A;  4B08 A;  4M3Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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