1FZ1E

Methane monooxygenase hydroxylase, form iii oxidized
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN
publication title Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site.
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 60
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2000-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz1E01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz1E02
1FZ1E 1FZ7E 1FZ8E 1FYZE 1XVGE 1XMGE 1XU3E 1FZ5E 1MHZG 1FZ6E 1XVBE 1FZ4E 1XVFE 1XMFE 1XMHE 1FZIE 1XVCE 1FZHE 1FZ0E 1MTYG 1FZ3E 1MHYG 1MMOG 4GAMC 1XU5E 1FZ9E 1XVEE 1XVDE 1FZ2E
chains in the Genus database with same CATH superfamily
3RWUA 2DY4A 1Q9YA 3TABA 3SQ4A 2FW3A 3QERA 2PFTA 3UO2A 4M3RA 3N1BA 3SUQA 1FYZE 2ATQA 1XVGE 4FVMA 3LZJA 4E4BA 4RL5A 2MW2A 1MHZG 3BVOA 3L1NA 3UO3A 4AKHA 3NDKA 1JW2A 5IZ7A 3K2OA 2JHAA 2JPNA 2JQTA 4I6JB 4EP9A 3KD1E 4FJIA 2K5SA 2OVRB 4FJ7A 4FJHA 1XMHE 3J27A 4DTMA 1FZ0E 2B1EA 3OGLB 3QEWA 1FS1A 3KD5E 4HCCA 3QEPA 2VJ5A 2HD0A 3CFOA 1FPOA 3C95A 4M3WA 4E3SA 2FYOA 1FZ1E 3LDBA 4FJXA 1FZ7E 2QXFA 3TL8B 4M3XA 2PFVA 4X5NA 3TAFA 4FJ8A 3RMBA 2OZSA 2LF3A 4J2BA 4ADOA 1XU3E 2VJ4A 4JS4A 4JRQA 3QESA 1WAJA 1P22A 4J2EA 4DTJA 4FK4A 2MMBA 1XVFE 3SCXA 2P1PB 3QEXA 3L0MA 4KHNA 3SUOA 4DU3A 3SUPA 1Q9XA 3RMAA 4FJJA 2OVPB 4ICGC 3RMCA 2OYQA 1XVCE 2H4TA 4J2AA 1FZHE 4X5MA 4KHQA 4M42A 1MTYG 2OVQB 2DTUA 1CLQA 3N1EA 3QNOA 4FJNA 2JH9A 3NCIA 4KI4A 3SUNA 3HP9A 3SNNA 1IH7A 3C94A 5IBKB 3SQ2A 2JHPA 3CFPA 3C6OB 3SPYA 3QEVA 3CQ8A 4AI6A 4JS5A 3E4YA 3SQ0A 4DTRA 4JRPA 2RCUA 5H37A 3TJYA 2B7MA 4M3UA 2DEBA 4I9QA 1XVBE 3RMDA 1N1CA 2LF6A 2P1OB 4M41A 3MKSB 4KHSA 2E32A 3SJJA 3LD8A 4IT5A 4DU1A 3OGMB 3NAEA 2P1QB 1XMFE 3HL8A 1FZIE 4B08A 3TAEA 4AKGA 3HGLA 2YB5A 3L8BA 1MHYG 4QNCA 1MMOG 3E4WA 3WSOA 4DTNA 1XU5E 3SVIA 4M45A 1FZ9E 4EYWA 3CFRA 3LDSA 4M3YA 3HGKE 3SQ1A 4FJKA 2B8IA 5IREA 2P5GA 3L2OB 3OGKB 4I9LA 3LZIA 1IG9A 3SPZA 2OZMA 4FJMA 1FZ8E 4J2DA 4FJ5A 4ADNA 3NE6A 3QETA 3C6NB 4FJGA 3V7DB 4FK2A 4FK0A 1XMGE 4RG8A 4DU4A 1FZ5E 4KI6A 1FZ6E 2E31A 4DTPA 2VIXA 4FJ9A 4KHWA 1FZ4E 1NEXB 2P1NB 4DTUA 4M3TA 1WAFA 2JHCA 4EPHA 3SI6A 4FJLA 4KHUA 4M3ZA 4KHYA 4DTSA 3NHGA 4HCBA 1LDKE 4DTXA 2JH8A 4QNDA 3QEIA 3NGIA 4DTOA 2MZWB 3J2PA 3TAGA 3UIQA 1FZ3E 4GAMC 2P1MB 2RKHA 4RNGA 3S9HA 1XL3C 1FXXA 1XVEE 1XVDE 3C6PB 3QNNA 4AKIA 2P5OA 1FZ2E
chains in the Genus database with same CATH topology
3RWUA 2DY4A 1Q9YA 3TABA 3SQ4A 2FW3A 3QERA 2PFTA 4M3RA 3N1BA 3SUQA 1FYZE 2ATQA 1XVGE 4FVMA 3LZJA 4E4BA 4RL5A 1MHZG 3L1NA 4AKHA 3NDKA 5IZ7A 3K2OA 2JHAA 2JPNA 4I6JB 4EP9A 3KD1E 4FJIA 2OVRB 4FJ7A 4FJHA 1XMHE 3J27A 4DTMA 1FZ0E 2B1EA 3OGLB 3QEWA 1FS1A 3KD5E 4HCCA 3QEPA 2VJ5A 2HD0A 3CFOA 3C95A 4M3WA 4E3SA 2FYOA 1FZ1E 3LDBA 4FJXA 1FZ7E 2QXFA 3TL8B 4M3XA 2PFVA 4X5NA 3TAFA 4FJ8A 3RMBA 2OZSA 2LF3A 4J2BA 4ADOA 1XU3E 2VJ4A 4JS4A 4JRQA 3QESA 1WAJA 1P22A 4J2EA 4DTJA 4FK4A 2MMBA 1XVFE 3SCXA 2P1PB 3QEXA 3L0MA 4KHNA 3SUOA 4DU3A 3SUPA 1Q9XA 3RMAA 4FJJA 2OVPB 3RMCA 2OYQA 1XVCE 2H4TA 4J2AA 1FZHE 4X5MA 4KHQA 4M42A 1MTYG 2OVQB 2DTUA 1CLQA 3N1EA 3QNOA 4FJNA 2JH9A 3NCIA 4KI4A 3SUNA 3HP9A 3SNNA 1IH7A 3C94A 5IBKB 3SQ2A 2JHPA 3CFPA 3C6OB 3SPYA 3QEVA 3CQ8A 4AI6A 4JS5A 3E4YA 3SQ0A 4DTRA 4JRPA 2RCUA 5H37A 3TJYA 2B7MA 4M3UA 2DEBA 4I9QA 1XVBE 3RMDA 2LF6A 2P1OB 4M41A 3MKSB 4KHSA 2E32A 3SJJA 3LD8A 4DU1A 3OGMB 3NAEA 2P1QB 1XMFE 3HL8A 1FZIE 4B08A 3TAEA 4AKGA 3HGLA 2YB5A 3L8BA 1MHYG 4QNCA 1MMOG 3E4WA 3WSOA 4DTNA 1XU5E 3SVIA 4M45A 1FZ9E 4EYWA 3CFRA 3LDSA 4M3YA 3HGKE 3SQ1A 4FJKA 2B8IA 5IREA 2P5GA 3L2OB 3OGKB 4I9LA 3LZIA 1IG9A 3SPZA 2OZMA 4FJMA 1FZ8E 4J2DA 4FJ5A 4ADNA 3NE6A 3QETA 3C6NB 4FJGA 3V7DB 4FK2A 4FK0A 1XMGE 4RG8A 4DU4A 1FZ5E 4KI6A 1FZ6E 2E31A 4DTPA 2VIXA 4FJ9A 4KHWA 1FZ4E 1NEXB 2P1NB 4DTUA 4M3TA 1WAFA 2JHCA 4EPHA 3SI6A 4FJLA 4KHUA 4M3ZA 4KHYA 4DTSA 3NHGA 4HCBA 1LDKE 4DTXA 2JH8A 4QNDA 3QEIA 3NGIA 4DTOA 2MZWB 3J2PA 3TAGA 3UIQA 1FZ3E 4GAMC 2P1MB 4RNGA 3S9HA 1XL3C 1FXXA 1XVEE 1XVDE 3C6PB 3QNNA 4AKIA 2P5OA 1FZ2E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZ1 E;  1FZ7 E;  1FZ8 E;  1FYZ E;  1XVG E;  1XMG E;  1XU3 E;  1FZ5 E;  1MHZ G;  1FZ6 E;  1XVB E;  1FZ4 E;  1XVF E;  1XMF E;  1XMH E;  1FZI E;  1XVC E;  1FZH E;  1FZ0 E;  1MTY G;  1FZ3 E;  1MHY G;  1MMO G;  4GAM C;  1XU5 E;  1FZ9 E;  1XVE E;  1XVD E;  1FZ2 E; 
#chains in the Genus database with same CATH topology
 3RWU A;  2DY4 A;  1Q9Y A;  3TAB A;  3SQ4 A;  2FW3 A;  3QER A;  2PFT A;  3UO2 A;  4M3R A;  3N1B A;  3SUQ A;  1FYZ E;  2ATQ A;  1XVG E;  4FVM A;  3LZJ A;  4E4B A;  4RL5 A;  2MW2 A;  1MHZ G;  3BVO A;  3L1N A;  3UO3 A;  4AKH A;  3NDK A;  1JW2 A;  5IZ7 A;  3K2O A;  2JHA A;  2JPN A;  2JQT A;  4I6J B;  4EP9 A;  3KD1 E;  4FJI A;  2K5S A;  2OVR B;  4FJ7 A;  4FJH A;  1XMH E;  3J27 A;  4DTM A;  1FZ0 E;  2B1E A;  3OGL B;  3QEW A;  1FS1 A;  3KD5 E;  4HCC A;  3QEP A;  2VJ5 A;  2HD0 A;  3CFO A;  1FPO A;  3C95 A;  4M3W A;  4E3S A;  2FYO A;  1FZ1 E;  3LDB A;  4FJX A;  1FZ7 E;  2QXF A;  3TL8 B;  4M3X A;  2PFV A;  4X5N A;  3TAF A;  4FJ8 A;  3RMB A;  2OZS A;  2LF3 A;  4J2B A;  4ADO A;  1XU3 E;  2VJ4 A;  4JS4 A;  4JRQ A;  3QES A;  1WAJ A;  1P22 A;  4J2E A;  4DTJ A;  4FK4 A;  2MMB A;  1XVF E;  3SCX A;  2P1P B;  3QEX A;  3L0M A;  4KHN A;  3SUO A;  4DU3 A;  3SUP A;  1Q9X A;  3RMA A;  4FJJ A;  2OVP B;  4ICG C;  3RMC A;  2OYQ A;  1XVC E;  2H4T A;  4J2A A;  1FZH E;  4X5M A;  4KHQ A;  4M42 A;  1MTY G;  2OVQ B;  2DTU A;  1CLQ A;  3N1E A;  3QNO A;  4FJN A;  2JH9 A;  3NCI A;  4KI4 A;  3SUN A;  3HP9 A;  3SNN A;  1IH7 A;  3C94 A;  5IBK B;  3SQ2 A;  2JHP A;  3CFP A;  3C6O B;  3SPY A;  3QEV A;  3CQ8 A;  4AI6 A;  4JS5 A;  3E4Y A;  3SQ0 A;  4DTR A;  4JRP A;  2RCU A;  5H37 A;  3TJY A;  2B7M A;  4M3U A;  2DEB A;  4I9Q A;  1XVB E;  3RMD A;  1N1C A;  2LF6 A;  2P1O B;  4M41 A;  3MKS B;  4KHS A;  2E32 A;  3SJJ A;  3LD8 A;  4IT5 A;  4DU1 A;  3OGM B;  3NAE A;  2P1Q B;  1XMF E;  3HL8 A;  1FZI E;  4B08 A;  3TAE A;  4AKG A;  3HGL A;  2YB5 A;  3L8B A;  1MHY G;  4QNC A;  1MMO G;  3E4W A;  3WSO A;  4DTN A;  1XU5 E;  3SVI A;  4M45 A;  1FZ9 E;  4EYW A;  3CFR A;  3LDS A;  4M3Y A;  3HGK E;  3SQ1 A;  4FJK A;  2B8I A;  5IRE A;  2P5G A;  3L2O B;  3OGK B;  4I9L A;  3LZI A;  1IG9 A;  3SPZ A;  2OZM A;  4FJM A;  1FZ8 E;  4J2D A;  4FJ5 A;  4ADN A;  3NE6 A;  3QET A;  3C6N B;  4FJG A;  3V7D B;  4FK2 A;  4FK0 A;  1XMG E;  4RG8 A;  4DU4 A;  1FZ5 E;  4KI6 A;  1FZ6 E;  2E31 A;  4DTP A;  2VIX A;  4FJ9 A;  4KHW A;  1FZ4 E;  1NEX B;  2P1N B;  4DTU A;  4M3T A;  1WAF A;  2JHC A;  4EPH A;  3SI6 A;  4FJL A;  4KHU A;  4M3Z A;  4KHY A;  4DTS A;  3NHG A;  4HCB A;  1LDK E;  4DTX A;  2JH8 A;  4QND A;  3QEI A;  3NGI A;  4DTO A;  2MZW B;  3J2P A;  3TAG A;  3UIQ A;  1FZ3 E;  4GAM C;  2P1M B;  2RKH A;  4RNG A;  3S9H A;  1XL3 C;  1FXX A;  1XVE E;  1XVD E;  3C6P B;  3QNN A;  4AKI A;  2P5O A;  1FZ2 E; 
#chains in the Genus database with same CATH homology
 3RWU A;  2DY4 A;  1Q9Y A;  3TAB A;  3SQ4 A;  2FW3 A;  3QER A;  2PFT A;  4M3R A;  3N1B A;  3SUQ A;  1FYZ E;  2ATQ A;  1XVG E;  4FVM A;  3LZJ A;  4E4B A;  4RL5 A;  1MHZ G;  3L1N A;  4AKH A;  3NDK A;  5IZ7 A;  3K2O A;  2JHA A;  2JPN A;  4I6J B;  4EP9 A;  3KD1 E;  4FJI A;  2OVR B;  4FJ7 A;  4FJH A;  1XMH E;  3J27 A;  4DTM A;  1FZ0 E;  2B1E A;  3OGL B;  3QEW A;  1FS1 A;  3KD5 E;  4HCC A;  3QEP A;  2VJ5 A;  2HD0 A;  3CFO A;  3C95 A;  4M3W A;  4E3S A;  2FYO A;  1FZ1 E;  3LDB A;  4FJX A;  1FZ7 E;  2QXF A;  3TL8 B;  4M3X A;  2PFV A;  4X5N A;  3TAF A;  4FJ8 A;  3RMB A;  2OZS A;  2LF3 A;  4J2B A;  4ADO A;  1XU3 E;  2VJ4 A;  4JS4 A;  4JRQ A;  3QES A;  1WAJ A;  1P22 A;  4J2E A;  4DTJ A;  4FK4 A;  2MMB A;  1XVF E;  3SCX A;  2P1P B;  3QEX A;  3L0M A;  4KHN A;  3SUO A;  4DU3 A;  3SUP A;  1Q9X A;  3RMA A;  4FJJ A;  2OVP B;  3RMC A;  2OYQ A;  1XVC E;  2H4T A;  4J2A A;  1FZH E;  4X5M A;  4KHQ A;  4M42 A;  1MTY G;  2OVQ B;  2DTU A;  1CLQ A;  3N1E A;  3QNO A;  4FJN A;  2JH9 A;  3NCI A;  4KI4 A;  3SUN A;  3HP9 A;  3SNN A;  1IH7 A;  3C94 A;  5IBK B;  3SQ2 A;  2JHP A;  3CFP A;  3C6O B;  3SPY A;  3QEV A;  3CQ8 A;  4AI6 A;  4JS5 A;  3E4Y A;  3SQ0 A;  4DTR A;  4JRP A;  2RCU A;  5H37 A;  3TJY A;  2B7M A;  4M3U A;  2DEB A;  4I9Q A;  1XVB E;  3RMD A;  2LF6 A;  2P1O B;  4M41 A;  3MKS B;  4KHS A;  2E32 A;  3SJJ A;  3LD8 A;  4DU1 A;  3OGM B;  3NAE A;  2P1Q B;  1XMF E;  3HL8 A;  1FZI E;  4B08 A;  3TAE A;  4AKG A;  3HGL A;  2YB5 A;  3L8B A;  1MHY G;  4QNC A;  1MMO G;  3E4W A;  3WSO A;  4DTN A;  1XU5 E;  3SVI A;  4M45 A;  1FZ9 E;  4EYW A;  3CFR A;  3LDS A;  4M3Y A;  3HGK E;  3SQ1 A;  4FJK A;  2B8I A;  5IRE A;  2P5G A;  3L2O B;  3OGK B;  4I9L A;  3LZI A;  1IG9 A;  3SPZ A;  2OZM A;  4FJM A;  1FZ8 E;  4J2D A;  4FJ5 A;  4ADN A;  3NE6 A;  3QET A;  3C6N B;  4FJG A;  3V7D B;  4FK2 A;  4FK0 A;  1XMG E;  4RG8 A;  4DU4 A;  1FZ5 E;  4KI6 A;  1FZ6 E;  2E31 A;  4DTP A;  2VIX A;  4FJ9 A;  4KHW A;  1FZ4 E;  1NEX B;  2P1N B;  4DTU A;  4M3T A;  1WAF A;  2JHC A;  4EPH A;  3SI6 A;  4FJL A;  4KHU A;  4M3Z A;  4KHY A;  4DTS A;  3NHG A;  4HCB A;  1LDK E;  4DTX A;  2JH8 A;  4QND A;  3QEI A;  3NGI A;  4DTO A;  2MZW B;  3J2P A;  3TAG A;  3UIQ A;  1FZ3 E;  4GAM C;  2P1M B;  4RNG A;  3S9H A;  1XL3 C;  1FXX A;  1XVE E;  1XVD E;  3C6P B;  3QNN A;  4AKI A;  2P5O A;  1FZ2 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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