3HGLA

Crystal of avrptob 121-205
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
78
structure length
78
Chain Sequence
GAVAHANSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVHQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ligase
source organism Pseudomonas syringae pv. tomato
publication title Crystal Structure of the Complex between Pseudomonas Effector AvrPtoB and the Tomato Pto Kinase Reveals Both a Shared and a Unique Interface Compared with AvrPto-Pto
pubmed doi rcsb
molecule keywords Effector protein hopAB2
total genus 21
structure length 78
sequence length 78
ec nomenclature ec 6.3.2.-:
pdb deposition date 2009-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.110 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3hglA00
3HGLA 3TJYA 3HGKE 3SVIA
chains in the Genus database with same CATH superfamily
3KD5E 2RKHA 2OVPB 3OGLB 1FZ5E 1XVEE 4J2DA 3E4WA 2LF6A 3HP9A 2OVQB 4AKGA 4J2EA 3OGMB 4B08A 4X5MA 4AKHA 3QETA 4M3WA 4JS5A 4ADNA 3TABA 2HD0A 4RG8A 2VIXA 2P5OA 3SNNA 4JRQA 4DU3A 3SUNA 4KI6A 4FK0A 4FJ9A 1FZIE 1XU3E 3SQ0A 1FPOA 4KHUA 3LZIA 1FZ4E 1MMOG 5IZ7A 1XMHE 3KD1E 1FZ9E 3NHGA 4DU4A 2VJ5A 2MZWB 2OZSA 2DEBA 4E3SA 3N1BA 4M42A 2B1EA 3SUPA 3QEWA 4JS4A 4ADOA 4DTUA 3QNNA 2E31A 3MKSB 2B8IA 1FZ0E 2FYOA 3L8BA 4DTSA 2JHCA 1XVCE 3UIQA 3SJJA 1FYZE 4FVMA 3SQ4A 4HCCA 3OGKB 4DTNA 3QEVA 4AKIA 3LDSA 2MW2A 3UO3A 3HGKE 3RMBA 1N1CA 1Q9XA 2B7MA 4M3TA 3SPYA 2P5GA 1NEXB 2DTUA 3K2OA 1CLQA 1FZHE 4JRPA 4KHWA 4FJMA 2DY4A 1XMFE 2JH9A 4IT5A 3CFRA 4KHYA 3C94A 2P1OB 2FW3A 3C95A 3LDBA 3SQ2A 4FJ7A 2QXFA 4DTOA 2P1NB 2RCUA 3CQ8A 3RMAA 4FJNA 5IBKB 1XVFE 2P1PB 3HGLA 4FJ5A 4M3ZA 3NGIA 4DTJA 1XVGE 3SCXA 3L2OB 3C6PB 3TAFA 3UO2A 3HL8A 1LDKE 3RMDA 1Q9YA 2P1MB 2PFVA 1WAFA 4FJHA 1XVBE 4KI4A 4FJJA 3RMCA 3LZJA 2OYQA 4DTRA 4FJGA 4QNDA 1MTYG 3QNOA 3QEIA 3NAEA 4QNCA 2P1QB 1XVDE 3L0MA 4M41A 3C6OB 4ICGC 1FZ8E 5IREA 1JW2A 1MHYG 3TJYA 3TAGA 1FZ2E 4M45A 3WSOA 3S9HA 4M3YA 3E4YA 1XL3C 3TAEA 3V7DB 3L1NA 4E4BA 2H4TA 3J27A 4AI6A 4I9LA 2JHAA 4RL5A 3J2PA 1FZ1E 1MHZG 3QEPA 4FK2A 3N1EA 4DTPA 2YB5A 3NDKA 4J2AA 3QEXA 4I6JB 4M3UA 4EP9A 4KHNA 2ATQA 1XU5E 2JH8A 4M3XA 3SI6A 5H37A 2E32A 1P22A 1FZ3E 3C6NB 4J2BA 1FXXA 3NCIA 4EYWA 4HCBA 3SUOA 3SPZA 2K5SA 3CFPA 2OVRB 1WAJA 4X5NA 4FJKA 1FZ6E 2JHPA 2OZMA 2JPNA 4DU1A 4M3RA 4KHSA 3SVIA 4DTMA 1FZ7E 2LF3A 2PFTA 3SQ1A 3RWUA 3QERA 4FJ8A 2VJ4A 4FJIA 4FJLA 4I9QA 3QESA 1FS1A 1IG9A 3LD8A 3NE6A 2MMBA 4FK4A 3CFOA 3SUQA 4KHQA 3TL8B 2JQTA 3BVOA 1XMGE 4RNGA 4DTXA 4GAMC 1IH7A 4FJXA 4EPHA
chains in the Genus database with same CATH topology
3KD5E 2OVPB 3OGLB 1FZ5E 1XVEE 4J2DA 3E4WA 2LF6A 3HP9A 2OVQB 4AKGA 4J2EA 3OGMB 4B08A 4X5MA 4AKHA 3QETA 4M3WA 4JS5A 4ADNA 3TABA 2HD0A 4RG8A 2VIXA 2P5OA 3SNNA 4JRQA 4DU3A 3SUNA 4KI6A 4FK0A 4FJ9A 1FZIE 1XU3E 3SQ0A 4KHUA 3LZIA 1FZ4E 1MMOG 5IZ7A 1XMHE 3KD1E 1FZ9E 3NHGA 4DU4A 2VJ5A 2MZWB 2OZSA 2DEBA 4E3SA 3N1BA 4M42A 2B1EA 3SUPA 3QEWA 4JS4A 4ADOA 4DTUA 3QNNA 2E31A 3MKSB 2B8IA 1FZ0E 2FYOA 3L8BA 4DTSA 2JHCA 1XVCE 3UIQA 3SJJA 1FYZE 4FVMA 3SQ4A 4HCCA 3OGKB 4DTNA 3QEVA 4AKIA 3LDSA 3HGKE 3RMBA 1Q9XA 2B7MA 4M3TA 3SPYA 2P5GA 1NEXB 2DTUA 3K2OA 1CLQA 1FZHE 4JRPA 4KHWA 4FJMA 2DY4A 1XMFE 2JH9A 3CFRA 4KHYA 3C94A 2P1OB 2FW3A 3C95A 3LDBA 3SQ2A 4FJ7A 2QXFA 4DTOA 2P1NB 2RCUA 3CQ8A 3RMAA 4FJNA 5IBKB 1XVFE 2P1PB 3HGLA 4FJ5A 4M3ZA 3NGIA 4DTJA 1XVGE 3SCXA 3L2OB 3C6PB 3TAFA 3RMDA 3HL8A 1LDKE 1Q9YA 2P1MB 2PFVA 1WAFA 4FJHA 1XVBE 4KI4A 4FJJA 3RMCA 3LZJA 2OYQA 4DTRA 4FJGA 4QNDA 1MTYG 3QNOA 3QEIA 3NAEA 4QNCA 2P1QB 1XVDE 3L0MA 4M41A 3C6OB 1FZ8E 5IREA 1MHYG 3TJYA 3TAGA 1FZ2E 4M45A 3WSOA 3S9HA 4M3YA 3E4YA 1XL3C 3TAEA 3V7DB 3L1NA 4E4BA 2H4TA 3J27A 4AI6A 4I9LA 2JHAA 4RL5A 3J2PA 1FZ1E 1MHZG 3QEPA 4FK2A 3N1EA 4DTPA 2YB5A 3NDKA 4J2AA 3QEXA 4I6JB 4M3UA 4EP9A 4KHNA 2ATQA 1XU5E 2JH8A 4M3XA 3SI6A 5H37A 2E32A 1P22A 1FZ3E 3C6NB 4J2BA 1FXXA 3NCIA 4EYWA 4HCBA 3SUOA 3SPZA 3CFPA 2OVRB 1WAJA 4X5NA 4FJKA 1FZ6E 2JHPA 2OZMA 2JPNA 4DU1A 4M3RA 4KHSA 3SVIA 4DTMA 1FZ7E 2LF3A 2PFTA 3SQ1A 3RWUA 3QERA 4FJ8A 2VJ4A 4FJIA 4FJLA 4I9QA 3QESA 1FS1A 1IG9A 3LD8A 3NE6A 2MMBA 4FK4A 3CFOA 3SUQA 4KHQA 3TL8B 4RNGA 1XMGE 4DTXA 4GAMC 1IH7A 4FJXA 4EPHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HGL A;  3TJY A;  3HGK E;  3SVI A; 
#chains in the Genus database with same CATH topology
 3KD5 E;  2RKH A;  2OVP B;  3OGL B;  1FZ5 E;  1XVE E;  4J2D A;  3E4W A;  2LF6 A;  3HP9 A;  2OVQ B;  4AKG A;  4J2E A;  3OGM B;  4B08 A;  4X5M A;  4AKH A;  3QET A;  4M3W A;  4JS5 A;  4ADN A;  3TAB A;  2HD0 A;  4RG8 A;  2VIX A;  2P5O A;  3SNN A;  4JRQ A;  4DU3 A;  3SUN A;  4KI6 A;  4FK0 A;  4FJ9 A;  1FZI E;  1XU3 E;  3SQ0 A;  1FPO A;  4KHU A;  3LZI A;  1FZ4 E;  1MMO G;  5IZ7 A;  1XMH E;  3KD1 E;  1FZ9 E;  3NHG A;  4DU4 A;  2VJ5 A;  2MZW B;  2OZS A;  2DEB A;  4E3S A;  3N1B A;  4M42 A;  2B1E A;  3SUP A;  3QEW A;  4JS4 A;  4ADO A;  4DTU A;  3QNN A;  2E31 A;  3MKS B;  2B8I A;  1FZ0 E;  2FYO A;  3L8B A;  4DTS A;  2JHC A;  1XVC E;  3UIQ A;  3SJJ A;  1FYZ E;  4FVM A;  3SQ4 A;  4HCC A;  3OGK B;  4DTN A;  3QEV A;  4AKI A;  3LDS A;  2MW2 A;  3UO3 A;  3HGK E;  3RMB A;  1N1C A;  1Q9X A;  2B7M A;  4M3T A;  3SPY A;  2P5G A;  1NEX B;  2DTU A;  3K2O A;  1CLQ A;  1FZH E;  4JRP A;  4KHW A;  4FJM A;  2DY4 A;  1XMF E;  2JH9 A;  4IT5 A;  3CFR A;  4KHY A;  3C94 A;  2P1O B;  2FW3 A;  3C95 A;  3LDB A;  3SQ2 A;  4FJ7 A;  2QXF A;  4DTO A;  2P1N B;  2RCU A;  3CQ8 A;  3RMA A;  4FJN A;  5IBK B;  1XVF E;  2P1P B;  3HGL A;  4FJ5 A;  4M3Z A;  3NGI A;  4DTJ A;  1XVG E;  3SCX A;  3L2O B;  3C6P B;  3TAF A;  3UO2 A;  3HL8 A;  1LDK E;  3RMD A;  1Q9Y A;  2P1M B;  2PFV A;  1WAF A;  4FJH A;  1XVB E;  4KI4 A;  4FJJ A;  3RMC A;  3LZJ A;  2OYQ A;  4DTR A;  4FJG A;  4QND A;  1MTY G;  3QNO A;  3QEI A;  3NAE A;  4QNC A;  2P1Q B;  1XVD E;  3L0M A;  4M41 A;  3C6O B;  4ICG C;  1FZ8 E;  5IRE A;  1JW2 A;  1MHY G;  3TJY A;  3TAG A;  1FZ2 E;  4M45 A;  3WSO A;  3S9H A;  4M3Y A;  3E4Y A;  1XL3 C;  3TAE A;  3V7D B;  3L1N A;  4E4B A;  2H4T A;  3J27 A;  4AI6 A;  4I9L A;  2JHA A;  4RL5 A;  3J2P A;  1FZ1 E;  1MHZ G;  3QEP A;  4FK2 A;  3N1E A;  4DTP A;  2YB5 A;  3NDK A;  4J2A A;  3QEX A;  4I6J B;  4M3U A;  4EP9 A;  4KHN A;  2ATQ A;  1XU5 E;  2JH8 A;  4M3X A;  3SI6 A;  5H37 A;  2E32 A;  1P22 A;  1FZ3 E;  3C6N B;  4J2B A;  1FXX A;  3NCI A;  4EYW A;  4HCB A;  3SUO A;  3SPZ A;  2K5S A;  3CFP A;  2OVR B;  1WAJ A;  4X5N A;  4FJK A;  1FZ6 E;  2JHP A;  2OZM A;  2JPN A;  4DU1 A;  4M3R A;  4KHS A;  3SVI A;  4DTM A;  1FZ7 E;  2LF3 A;  2PFT A;  3SQ1 A;  3RWU A;  3QER A;  4FJ8 A;  2VJ4 A;  4FJI A;  4FJL A;  4I9Q A;  3QES A;  1FS1 A;  1IG9 A;  3LD8 A;  3NE6 A;  2MMB A;  4FK4 A;  3CFO A;  3SUQ A;  4KHQ A;  3TL8 B;  2JQT A;  3BVO A;  1XMG E;  4RNG A;  4DTX A;  4GAM C;  1IH7 A;  4FJX A;  4EPH A; 
#chains in the Genus database with same CATH homology
 3KD5 E;  2OVP B;  3OGL B;  1FZ5 E;  1XVE E;  4J2D A;  3E4W A;  2LF6 A;  3HP9 A;  2OVQ B;  4AKG A;  4J2E A;  3OGM B;  4B08 A;  4X5M A;  4AKH A;  3QET A;  4M3W A;  4JS5 A;  4ADN A;  3TAB A;  2HD0 A;  4RG8 A;  2VIX A;  2P5O A;  3SNN A;  4JRQ A;  4DU3 A;  3SUN A;  4KI6 A;  4FK0 A;  4FJ9 A;  1FZI E;  1XU3 E;  3SQ0 A;  4KHU A;  3LZI A;  1FZ4 E;  1MMO G;  5IZ7 A;  1XMH E;  3KD1 E;  1FZ9 E;  3NHG A;  4DU4 A;  2VJ5 A;  2MZW B;  2OZS A;  2DEB A;  4E3S A;  3N1B A;  4M42 A;  2B1E A;  3SUP A;  3QEW A;  4JS4 A;  4ADO A;  4DTU A;  3QNN A;  2E31 A;  3MKS B;  2B8I A;  1FZ0 E;  2FYO A;  3L8B A;  4DTS A;  2JHC A;  1XVC E;  3UIQ A;  3SJJ A;  1FYZ E;  4FVM A;  3SQ4 A;  4HCC A;  3OGK B;  4DTN A;  3QEV A;  4AKI A;  3LDS A;  3HGK E;  3RMB A;  1Q9X A;  2B7M A;  4M3T A;  3SPY A;  2P5G A;  1NEX B;  2DTU A;  3K2O A;  1CLQ A;  1FZH E;  4JRP A;  4KHW A;  4FJM A;  2DY4 A;  1XMF E;  2JH9 A;  3CFR A;  4KHY A;  3C94 A;  2P1O B;  2FW3 A;  3C95 A;  3LDB A;  3SQ2 A;  4FJ7 A;  2QXF A;  4DTO A;  2P1N B;  2RCU A;  3CQ8 A;  3RMA A;  4FJN A;  5IBK B;  1XVF E;  2P1P B;  3HGL A;  4FJ5 A;  4M3Z A;  3NGI A;  4DTJ A;  1XVG E;  3SCX A;  3L2O B;  3C6P B;  3TAF A;  3RMD A;  3HL8 A;  1LDK E;  1Q9Y A;  2P1M B;  2PFV A;  1WAF A;  4FJH A;  1XVB E;  4KI4 A;  4FJJ A;  3RMC A;  3LZJ A;  2OYQ A;  4DTR A;  4FJG A;  4QND A;  1MTY G;  3QNO A;  3QEI A;  3NAE A;  4QNC A;  2P1Q B;  1XVD E;  3L0M A;  4M41 A;  3C6O B;  1FZ8 E;  5IRE A;  1MHY G;  3TJY A;  3TAG A;  1FZ2 E;  4M45 A;  3WSO A;  3S9H A;  4M3Y A;  3E4Y A;  1XL3 C;  3TAE A;  3V7D B;  3L1N A;  4E4B A;  2H4T A;  3J27 A;  4AI6 A;  4I9L A;  2JHA A;  4RL5 A;  3J2P A;  1FZ1 E;  1MHZ G;  3QEP A;  4FK2 A;  3N1E A;  4DTP A;  2YB5 A;  3NDK A;  4J2A A;  3QEX A;  4I6J B;  4M3U A;  4EP9 A;  4KHN A;  2ATQ A;  1XU5 E;  2JH8 A;  4M3X A;  3SI6 A;  5H37 A;  2E32 A;  1P22 A;  1FZ3 E;  3C6N B;  4J2B A;  1FXX A;  3NCI A;  4EYW A;  4HCB A;  3SUO A;  3SPZ A;  3CFP A;  2OVR B;  1WAJ A;  4X5N A;  4FJK A;  1FZ6 E;  2JHP A;  2OZM A;  2JPN A;  4DU1 A;  4M3R A;  4KHS A;  3SVI A;  4DTM A;  1FZ7 E;  2LF3 A;  2PFT A;  3SQ1 A;  3RWU A;  3QER A;  4FJ8 A;  2VJ4 A;  4FJI A;  4FJL A;  4I9Q A;  3QES A;  1FS1 A;  1IG9 A;  3LD8 A;  3NE6 A;  2MMB A;  4FK4 A;  3CFO A;  3SUQ A;  4KHQ A;  3TL8 B;  4RNG A;  1XMG E;  4DTX A;  4GAM C;  1IH7 A;  4FJX A;  4EPH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...