The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
78
|
structure length |
78
|
Chain Sequence |
GAVAHANSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVHQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Effector protein hopAB2
|
| publication title |
Crystal Structure of the Complex between Pseudomonas Effector AvrPtoB and the Tomato Pto Kinase Reveals Both a Shared and a Unique Interface Compared with AvrPto-Pto
pubmed doi rcsb |
| source organism |
Pseudomonas syringae pv. tomato
|
| molecule tags |
Ligase
|
| total genus |
21
|
| structure length |
78
|
| sequence length |
78
|
| ec nomenclature |
ec
6.3.2.-: |
| pdb deposition date | 2009-05-14 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Monooxygenase | Monooxygenase |
#chains in the Genus database with same CATH superfamily 3TJY A; 3SVI A; 3HGL A; 3HGK E; #chains in the Genus database with same CATH topology 3C6P B; 2E31 A; 4J2D A; 4DTR A; 1XU5 E; 4FJJ A; 3NDK A; 4KHU A; 4ICG C; 2JH8 A; 1XVB E; 3RMB A; 2OVQ B; 1XVD E; 2OZS A; 4FJM A; 1FS1 A; 4X5M A; 4M3X A; 2P1N B; 3SQ1 A; 1FZ7 E; 3SUO A; 4DTX A; 1XVE E; 2B7M A; 2JHA A; 1MTY G; 3UO3 A; 4EP9 A; 1FPO A; 4RL5 A; 3TAG A; 1N1C A; 3RMD A; 3CFO A; 4KHN A; 3QES A; 3MKS B; 1FZ3 E; 1XL3 C; 3QEI A; 4FK2 A; 4I6J B; 4E4B A; 3LD8 A; 1FYZ E; 3J27 A; 4QNC A; 4EYW A; 1MHY G; 4FJG A; 4HCB A; 2OVP B; 1FZ1 E; 4I9Q A; 3SQ2 A; 2DEB A; 1WAF A; 2B1E A; 1XMH E; 2H4T A; 3LDB A; 3N1E A; 3NHG A; 1Q9Y A; 3LDS A; 3TJY A; 4FK0 A; 2P5G A; 1MMO G; 3TAF A; 3LZJ A; 4KI6 A; 4QND A; 4FJ8 A; 3SUN A; 4M41 A; 1FZH E; 3NGI A; 3L1N A; 1FZ0 E; 4FK4 A; 3SPY A; 4JRP A; 2OVR B; 4M3U A; 2JQT A; 4FJL A; 3QEV A; 3UO2 A; 4FJN A; 5H37 A; 4ADO A; 3NCI A; 3RMA A; 3QEP A; 1Q9X A; 1FZ6 E; 2JHP A; 4DU1 A; 2LF6 A; 4FJX A; 4I9L A; 4E3S A; 1IH7 A; 2JHC A; 4KHS A; 3SQ4 A; 3SNN A; 3J2P A; 1LDK E; 4M42 A; 3CFR A; 3UIQ A; 2PFT A; 3SQ0 A; 4M3R A; 3QET A; 2VJ5 A; 2P1O B; 1XMF E; 3L8B A; 4M45 A; 3L0M A; 2QXF A; 4ADN A; 3QEW A; 4FJK A; 1NEX B; 3TAB A; 3OGK B; 3QER A; 3S9H A; 1MHZ G; 2P1M B; 2OZM A; 4KHQ A; 2JPN A; 2YB5 A; 3N1B A; 4KI4 A; 1XVC E; 2P5O A; 3TAE A; 3SUQ A; 1XU3 E; 4JRQ A; 4J2B A; 3QNO A; 4DTN A; 3C6N B; 2B8I A; 1XMG E; 2MZW B; 1JW2 A; 2RKH A; 1FZI E; 2RCU A; 3LZI A; 4FJ7 A; 1XVF E; 4FJ9 A; 2P1P B; 4B08 A; 4DTP A; 1FXX A; 3C6O B; 3HGK E; 2JH9 A; 2MW2 A; 1FZ9 E; 4M3T A; 1CLQ A; 4DTJ A; 3SPZ A; 1P22 A; 2E32 A; 1IG9 A; 4RG8 A; 4AKG A; 4AKI A; 3C95 A; 1FZ5 E; 2FW3 A; 3QEX A; 3RWU A; 5IBK B; 3C94 A; 4FVM A; 4JS5 A; 3SJJ A; 4X5N A; 2DY4 A; 3CFP A; 4KHY A; 3OGM B; 3NE6 A; 2ATQ A; 4DTO A; 4FJH A; 3K2O A; 4JS4 A; 4FJ5 A; 4KHW A; 1FZ8 E; 4RNG A; 4DU3 A; 4M3Z A; 2MMB A; 2HD0 A; 4IT5 A; 3NAE A; 1FZ4 E; 4DU4 A; 3SVI A; 4DTU A; 4J2E A; 2P1Q B; 3E4Y A; 1XVG E; 3CQ8 A; 4J2A A; 4HCC A; 3SUP A; 3SI6 A; 2DTU A; 3KD5 E; 2FYO A; 3OGL B; 5IZ7 A; 4DTS A; 4FJI A; 4EPH A; 2LF3 A; 1WAJ A; 2VIX A; 3TL8 B; 3QNN A; 5IRE A; 3SCX A; 3BVO A; 3HGL A; 2PFV A; 1FZ2 E; 2K5S A; 3WSO A; 4GAM C; 3V7D B; 3HL8 A; 3RMC A; 4AI6 A; 2OYQ A; 4M3W A; 4AKH A; 2VJ4 A; 3L2O B; 3KD1 E; 3E4W A; 3HP9 A; 4DTM A; 4M3Y A; #chains in the Genus database with same CATH homology 3C6P B; 2E31 A; 4J2D A; 4DTR A; 1XU5 E; 4FJJ A; 3NDK A; 4KHU A; 2JH8 A; 1XVB E; 3RMB A; 2OVQ B; 1XVD E; 2OZS A; 4FJM A; 1FS1 A; 4X5M A; 4M3X A; 2P1N B; 3SQ1 A; 1FZ7 E; 3SUO A; 4DTX A; 1XVE E; 2B7M A; 2JHA A; 1MTY G; 4EP9 A; 4RL5 A; 3TAG A; 3RMD A; 3CFO A; 4KHN A; 3QES A; 3MKS B; 1FZ3 E; 1XL3 C; 3QEI A; 4FK2 A; 4I6J B; 4E4B A; 3LD8 A; 1FYZ E; 3J27 A; 4QNC A; 4EYW A; 1MHY G; 4FJG A; 4HCB A; 2OVP B; 1FZ1 E; 4I9Q A; 3SQ2 A; 2DEB A; 1WAF A; 2B1E A; 1XMH E; 2H4T A; 3LDB A; 3N1E A; 3NHG A; 1Q9Y A; 3LDS A; 3TJY A; 4FK0 A; 2P5G A; 1MMO G; 3TAF A; 3LZJ A; 4KI6 A; 4QND A; 4FJ8 A; 3SUN A; 4M41 A; 1FZH E; 3NGI A; 3L1N A; 1FZ0 E; 4FK4 A; 3SPY A; 4JRP A; 2OVR B; 4M3U A; 4FJL A; 3QEV A; 4FJN A; 5H37 A; 4ADO A; 3NCI A; 3RMA A; 3QEP A; 1Q9X A; 1FZ6 E; 2JHP A; 4DU1 A; 2LF6 A; 4FJX A; 4I9L A; 4E3S A; 1IH7 A; 2JHC A; 4KHS A; 3SQ4 A; 3SNN A; 3J2P A; 1LDK E; 4M42 A; 3CFR A; 3UIQ A; 2PFT A; 3SQ0 A; 4M3R A; 3QET A; 2VJ5 A; 2P1O B; 1XMF E; 3L8B A; 4M45 A; 3L0M A; 2QXF A; 4ADN A; 3QEW A; 4FJK A; 1NEX B; 3TAB A; 3OGK B; 3QER A; 3S9H A; 1MHZ G; 2P1M B; 2OZM A; 4KHQ A; 2JPN A; 2YB5 A; 3N1B A; 4KI4 A; 1XVC E; 2P5O A; 3TAE A; 3SUQ A; 1XU3 E; 4JRQ A; 4J2B A; 3QNO A; 4DTN A; 3C6N B; 2B8I A; 1XMG E; 2MZW B; 2RCU A; 1FZI E; 3LZI A; 4FJ7 A; 1XVF E; 4FJ9 A; 2P1P B; 4B08 A; 4DTP A; 1FXX A; 3C6O B; 3HGK E; 2JH9 A; 1FZ9 E; 4M3T A; 1CLQ A; 4DTJ A; 3SPZ A; 1P22 A; 2E32 A; 1IG9 A; 4RG8 A; 4AKG A; 4AKI A; 3C95 A; 1FZ5 E; 2FW3 A; 3QEX A; 3RWU A; 5IBK B; 3C94 A; 4FVM A; 4JS5 A; 3SJJ A; 4X5N A; 2DY4 A; 3CFP A; 4KHY A; 3OGM B; 3NE6 A; 2ATQ A; 4DTO A; 4FJH A; 3K2O A; 4JS4 A; 4FJ5 A; 4KHW A; 1FZ8 E; 4RNG A; 4DU3 A; 4M3Z A; 2MMB A; 2HD0 A; 3NAE A; 4DU4 A; 1FZ4 E; 3SVI A; 4DTU A; 4J2E A; 2P1Q B; 3E4Y A; 1XVG E; 3CQ8 A; 4J2A A; 4HCC A; 3SUP A; 3SI6 A; 2DTU A; 3KD5 E; 2FYO A; 3OGL B; 5IZ7 A; 4DTS A; 4FJI A; 4EPH A; 2LF3 A; 1WAJ A; 2VIX A; 3TL8 B; 3QNN A; 5IRE A; 3SCX A; 3HGL A; 2PFV A; 1FZ2 E; 3WSO A; 4GAM C; 3V7D B; 3HL8 A; 3RMC A; 4AI6 A; 2OYQ A; 4M3W A; 4AKH A; 2VJ4 A; 3L2O B; 3KD1 E; 3E4W A; 3HP9 A; 4DTM A; 4M3Y A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
