3HGLA

Crystal of avrptob 121-205
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
78
structure length
78
Chain Sequence
GAVAHANSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVHQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords Effector protein hopAB2
publication title Crystal Structure of the Complex between Pseudomonas Effector AvrPtoB and the Tomato Pto Kinase Reveals Both a Shared and a Unique Interface Compared with AvrPto-Pto
pubmed doi rcsb
source organism Pseudomonas syringae pv. tomato
total genus 21
structure length 78
sequence length 78
ec nomenclature ec 6.3.2.-:
pdb deposition date 2009-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.110 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3hglA00
3HGKE 3HGLA 3SVIA 3TJYA
chains in the Genus database with same CATH superfamily
1XVCE 1N1CA 2VJ5A 4AKIA 4I6JB 3QEXA 2P1PB 3SNNA 3L1NA 3SQ1A 4KHUA 2P5OA 4DTXA 1FZ9E 3NHGA 3E4YA 4DTRA 4J2DA 3OGMB 4KHNA 1MHYG 1P22A 4J2AA 4DU4A 1FZHE 2QXFA 1XU3E 3TAEA 3TAGA 1XU5E 4FJLA 5IBKB 4FJMA 3KD5E 3LD8A 4DTNA 3HGLA 5IREA 4M3UA 2FYOA 3SI6A 4JRPA 1FZ2E 2P1MB 4FJ5A 4EP9A 4M3YA 3TL8B 1FYZE 1Q9YA 1MHZG 1MTYG 2OZSA 1FPOA 4DU1A 1XVDE 1FZ1E 3C94A 3QEVA 4EYWA 3CFRA 3OGLB 2DTUA 3LDBA 2OVQB 3SVIA 3NCIA 4JS5A 4FK2A 1XMGE 3RMDA 3SJJA 4M3WA 4M42A 3K2OA 1XVEE 4M3XA 1LDKE 1FZ4E 3CQ8A 3SCXA 3N1EA 3SQ0A 4ICGC 2OZMA 3NAEA 3QNNA 1FXXA 3TAFA 3C6OB 2PFVA 1FZIE 4J2EA 3RMBA 4ADNA 2DEBA 2B1EA 5IZ7A 1XVFE 2OYQA 4DTOA 3L2OB 4DTMA 1NEXB 2JH8A 2JH9A 2OVPB 3HL8A 4DU3A 3E4WA 4DTSA 1FZ8E 3SPZA 2VIXA 4AKGA 3SUQA 4HCCA 4I9LA 4M45A 3TABA 2LF6A 2MZWB 1XL3C 2YB5A 1FS1A 2JHPA 2E31A 3UIQA 4FJIA 3LZIA 1WAJA 4IT5A 3C6NB 2JQTA 3UO2A 4FJJA 3L0MA 4J2BA 4M3TA 3HGKE 4AI6A 4QNCA 3QESA 3QERA 4GAMC 3RMAA 3QEPA 3NGIA 4JRQA 4FJNA 4FJHA 4KHQA 1FZ0E 3V7DB 4KHSA 1WAFA 2PFTA 4FJXA 4FJ8A 3LDSA 4E4BA 1FZ3E 3QEIA 4FJKA 4KI4A 4AKHA 2OVRB 3SUPA 1XMHE 1XVBE 3UO3A 3BVOA 1XVGE 3WSOA 2RKHA 1CLQA 1MMOG 3C6PB 2MMBA 4RL5A 4ADOA 4RNGA 3QNOA 4FVMA 4B08A 2P5GA 5H37A 3OGKB 2H4TA 3TJYA 1XMFE 2JHAA 3C95A 4E3SA 4FJ7A 4FJGA 3KD1E 2LF3A 2JHCA 3SPYA 2B8IA 4X5MA 4DTUA 2P1QB 3SQ4A 4HCBA 2RCUA 2B7MA 4M3RA 1JW2A 3RWUA 4M3ZA 4JS4A 4FK0A 4FK4A 3J27A 3MKSB 3QEWA 2ATQA 2P1OB 3SUNA 4DTPA 1Q9XA 1FZ7E 2MW2A 4X5NA 3NDKA 4KI6A 2K5SA 2VJ4A 4DTJA 4RG8A 2P1NB 4QNDA 1FZ6E 3SUOA 3N1BA 4EPHA 3S9HA 4KHYA 3L8BA 3J2PA 2DY4A 4I9QA 3RMCA 4M41A 3CFOA 4KHWA 2JPNA 3SQ2A 3CFPA 3QETA 2E32A 3NE6A 3LZJA 3HP9A 2FW3A 2HD0A 1IG9A 1FZ5E 4FJ9A 1IH7A
chains in the Genus database with same CATH topology
1XVCE 2VJ5A 4AKIA 4I6JB 3QEXA 2P1PB 3SNNA 3L1NA 3SQ1A 4KHUA 2P5OA 4DTXA 1FZ9E 3NHGA 3E4YA 4DTRA 4J2DA 3OGMB 4KHNA 1MHYG 1P22A 4J2AA 4DU4A 1FZHE 2QXFA 1XU3E 3TAEA 3TAGA 1XU5E 4FJLA 5IBKB 4FJMA 3KD5E 3LD8A 4DTNA 3HGLA 5IREA 4M3UA 2FYOA 3SI6A 4JRPA 1FZ2E 2P1MB 4FJ5A 4EP9A 4M3YA 3TL8B 1FYZE 1Q9YA 1MHZG 1MTYG 2OZSA 4DU1A 1XVDE 1FZ1E 3C94A 3QEVA 4EYWA 3CFRA 3OGLB 2DTUA 3LDBA 2OVQB 3SVIA 3NCIA 4JS5A 4FK2A 1XMGE 3RMDA 3SJJA 4M3WA 4M42A 3K2OA 1XVEE 4M3XA 1LDKE 1FZ4E 3CQ8A 3SCXA 3N1EA 3SQ0A 2OZMA 3NAEA 3QNNA 1FXXA 3TAFA 3C6OB 2PFVA 1FZIE 4J2EA 3RMBA 4ADNA 2DEBA 2B1EA 5IZ7A 1XVFE 2OYQA 4DTOA 3L2OB 4DTMA 1NEXB 2JH8A 2JH9A 2OVPB 3HL8A 4DU3A 3E4WA 4DTSA 1FZ8E 3SPZA 2VIXA 4AKGA 3SUQA 4HCCA 4I9LA 4M45A 3TABA 2LF6A 2YB5A 2MZWB 1XL3C 1FS1A 2JHPA 2E31A 3UIQA 4FJIA 3LZIA 1WAJA 4FJJA 3C6NB 4J2BA 4M3TA 3L0MA 3HGKE 4AI6A 4QNCA 3QESA 3QERA 4GAMC 3RMAA 3QEPA 3NGIA 4JRQA 4FJNA 4FJHA 4KHQA 1FZ0E 3V7DB 4KHSA 1WAFA 2PFTA 4FJXA 4FJ8A 3LDSA 4E4BA 1FZ3E 3QEIA 4FJKA 4KI4A 4AKHA 2OVRB 3SUPA 1XMHE 1XVBE 1XVGE 3WSOA 1CLQA 1MMOG 3C6PB 2MMBA 4RL5A 4ADOA 4RNGA 3QNOA 4FVMA 4B08A 2P5GA 5H37A 3OGKB 2H4TA 3TJYA 1XMFE 2JHAA 3C95A 4E3SA 4FJ7A 4FJGA 3KD1E 2LF3A 2JHCA 3SPYA 2B8IA 4X5MA 4DTUA 2P1QB 3SQ4A 4HCBA 2RCUA 2B7MA 4M3RA 3RWUA 4M3ZA 4JS4A 4FK0A 4FK4A 3J27A 3MKSB 3QEWA 2ATQA 2P1OB 3SUNA 4DTPA 1Q9XA 1FZ7E 4X5NA 3NDKA 4KI6A 2VJ4A 4DTJA 4RG8A 2P1NB 4QNDA 1FZ6E 3SUOA 3N1BA 4EPHA 3S9HA 4KHYA 3L8BA 3J2PA 2DY4A 4I9QA 3RMCA 4M41A 3CFOA 4KHWA 2JPNA 3SQ2A 3CFPA 3QETA 2E32A 3NE6A 3LZJA 3HP9A 2FW3A 2HD0A 1IG9A 1FZ5E 4FJ9A 1IH7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HGK E;  3HGL A;  3SVI A;  3TJY A; 
#chains in the Genus database with same CATH topology
 1XVC E;  1N1C A;  2VJ5 A;  4AKI A;  4I6J B;  3QEX A;  2P1P B;  3SNN A;  3L1N A;  3SQ1 A;  4KHU A;  2P5O A;  4DTX A;  1FZ9 E;  3NHG A;  3E4Y A;  4DTR A;  4J2D A;  3OGM B;  4KHN A;  1MHY G;  1P22 A;  4J2A A;  4DU4 A;  1FZH E;  2QXF A;  1XU3 E;  3TAE A;  3TAG A;  1XU5 E;  4FJL A;  5IBK B;  4FJM A;  3KD5 E;  3LD8 A;  4DTN A;  3HGL A;  5IRE A;  4M3U A;  2FYO A;  3SI6 A;  4JRP A;  1FZ2 E;  2P1M B;  4FJ5 A;  4EP9 A;  4M3Y A;  3TL8 B;  1FYZ E;  1Q9Y A;  1MHZ G;  1MTY G;  2OZS A;  1FPO A;  4DU1 A;  1XVD E;  1FZ1 E;  3C94 A;  3QEV A;  4EYW A;  3CFR A;  3OGL B;  2DTU A;  3LDB A;  2OVQ B;  3SVI A;  3NCI A;  4JS5 A;  4FK2 A;  1XMG E;  3RMD A;  3SJJ A;  4M3W A;  4M42 A;  3K2O A;  1XVE E;  4M3X A;  1LDK E;  1FZ4 E;  3CQ8 A;  3SCX A;  3N1E A;  3SQ0 A;  4ICG C;  2OZM A;  3NAE A;  3QNN A;  1FXX A;  3TAF A;  3C6O B;  2PFV A;  1FZI E;  4J2E A;  3RMB A;  4ADN A;  2DEB A;  2B1E A;  5IZ7 A;  1XVF E;  2OYQ A;  4DTO A;  3L2O B;  4DTM A;  1NEX B;  2JH8 A;  2JH9 A;  2OVP B;  3HL8 A;  4DU3 A;  3E4W A;  4DTS A;  1FZ8 E;  3SPZ A;  2VIX A;  4AKG A;  3SUQ A;  4HCC A;  4I9L A;  4M45 A;  3TAB A;  2LF6 A;  2MZW B;  1XL3 C;  2YB5 A;  1FS1 A;  2JHP A;  2E31 A;  3UIQ A;  4FJI A;  3LZI A;  1WAJ A;  4IT5 A;  3C6N B;  2JQT A;  3UO2 A;  4FJJ A;  3L0M A;  4J2B A;  4M3T A;  3HGK E;  4AI6 A;  4QNC A;  3QES A;  3QER A;  4GAM C;  3RMA A;  3QEP A;  3NGI A;  4JRQ A;  4FJN A;  4FJH A;  4KHQ A;  1FZ0 E;  3V7D B;  4KHS A;  1WAF A;  2PFT A;  4FJX A;  4FJ8 A;  3LDS A;  4E4B A;  1FZ3 E;  3QEI A;  4FJK A;  4KI4 A;  4AKH A;  2OVR B;  3SUP A;  1XMH E;  1XVB E;  3UO3 A;  3BVO A;  1XVG E;  3WSO A;  2RKH A;  1CLQ A;  1MMO G;  3C6P B;  2MMB A;  4RL5 A;  4ADO A;  4RNG A;  3QNO A;  4FVM A;  4B08 A;  2P5G A;  5H37 A;  3OGK B;  2H4T A;  3TJY A;  1XMF E;  2JHA A;  3C95 A;  4E3S A;  4FJ7 A;  4FJG A;  3KD1 E;  2LF3 A;  2JHC A;  3SPY A;  2B8I A;  4X5M A;  4DTU A;  2P1Q B;  3SQ4 A;  4HCB A;  2RCU A;  2B7M A;  4M3R A;  1JW2 A;  3RWU A;  4M3Z A;  4JS4 A;  4FK0 A;  4FK4 A;  3J27 A;  3MKS B;  3QEW A;  2ATQ A;  2P1O B;  3SUN A;  4DTP A;  1Q9X A;  1FZ7 E;  2MW2 A;  4X5N A;  3NDK A;  4KI6 A;  2K5S A;  2VJ4 A;  4DTJ A;  4RG8 A;  2P1N B;  4QND A;  1FZ6 E;  3SUO A;  3N1B A;  4EPH A;  3S9H A;  4KHY A;  3L8B A;  3J2P A;  2DY4 A;  4I9Q A;  3RMC A;  4M41 A;  3CFO A;  4KHW A;  2JPN A;  3SQ2 A;  3CFP A;  3QET A;  2E32 A;  3NE6 A;  3LZJ A;  3HP9 A;  2FW3 A;  2HD0 A;  1IG9 A;  1FZ5 E;  4FJ9 A;  1IH7 A; 
#chains in the Genus database with same CATH homology
 1XVC E;  2VJ5 A;  4AKI A;  4I6J B;  3QEX A;  2P1P B;  3SNN A;  3L1N A;  3SQ1 A;  4KHU A;  2P5O A;  4DTX A;  1FZ9 E;  3NHG A;  3E4Y A;  4DTR A;  4J2D A;  3OGM B;  4KHN A;  1MHY G;  1P22 A;  4J2A A;  4DU4 A;  1FZH E;  2QXF A;  1XU3 E;  3TAE A;  3TAG A;  1XU5 E;  4FJL A;  5IBK B;  4FJM A;  3KD5 E;  3LD8 A;  4DTN A;  3HGL A;  5IRE A;  4M3U A;  2FYO A;  3SI6 A;  4JRP A;  1FZ2 E;  2P1M B;  4FJ5 A;  4EP9 A;  4M3Y A;  3TL8 B;  1FYZ E;  1Q9Y A;  1MHZ G;  1MTY G;  2OZS A;  4DU1 A;  1XVD E;  1FZ1 E;  3C94 A;  3QEV A;  4EYW A;  3CFR A;  3OGL B;  2DTU A;  3LDB A;  2OVQ B;  3SVI A;  3NCI A;  4JS5 A;  4FK2 A;  1XMG E;  3RMD A;  3SJJ A;  4M3W A;  4M42 A;  3K2O A;  1XVE E;  4M3X A;  1LDK E;  1FZ4 E;  3CQ8 A;  3SCX A;  3N1E A;  3SQ0 A;  2OZM A;  3NAE A;  3QNN A;  1FXX A;  3TAF A;  3C6O B;  2PFV A;  1FZI E;  4J2E A;  3RMB A;  4ADN A;  2DEB A;  2B1E A;  5IZ7 A;  1XVF E;  2OYQ A;  4DTO A;  3L2O B;  4DTM A;  1NEX B;  2JH8 A;  2JH9 A;  2OVP B;  3HL8 A;  4DU3 A;  3E4W A;  4DTS A;  1FZ8 E;  3SPZ A;  2VIX A;  4AKG A;  3SUQ A;  4HCC A;  4I9L A;  4M45 A;  3TAB A;  2LF6 A;  2YB5 A;  2MZW B;  1XL3 C;  1FS1 A;  2JHP A;  2E31 A;  3UIQ A;  4FJI A;  3LZI A;  1WAJ A;  4FJJ A;  3C6N B;  4J2B A;  4M3T A;  3L0M A;  3HGK E;  4AI6 A;  4QNC A;  3QES A;  3QER A;  4GAM C;  3RMA A;  3QEP A;  3NGI A;  4JRQ A;  4FJN A;  4FJH A;  4KHQ A;  1FZ0 E;  3V7D B;  4KHS A;  1WAF A;  2PFT A;  4FJX A;  4FJ8 A;  3LDS A;  4E4B A;  1FZ3 E;  3QEI A;  4FJK A;  4KI4 A;  4AKH A;  2OVR B;  3SUP A;  1XMH E;  1XVB E;  1XVG E;  3WSO A;  1CLQ A;  1MMO G;  3C6P B;  2MMB A;  4RL5 A;  4ADO A;  4RNG A;  3QNO A;  4FVM A;  4B08 A;  2P5G A;  5H37 A;  3OGK B;  2H4T A;  3TJY A;  1XMF E;  2JHA A;  3C95 A;  4E3S A;  4FJ7 A;  4FJG A;  3KD1 E;  2LF3 A;  2JHC A;  3SPY A;  2B8I A;  4X5M A;  4DTU A;  2P1Q B;  3SQ4 A;  4HCB A;  2RCU A;  2B7M A;  4M3R A;  3RWU A;  4M3Z A;  4JS4 A;  4FK0 A;  4FK4 A;  3J27 A;  3MKS B;  3QEW A;  2ATQ A;  2P1O B;  3SUN A;  4DTP A;  1Q9X A;  1FZ7 E;  4X5N A;  3NDK A;  4KI6 A;  2VJ4 A;  4DTJ A;  4RG8 A;  2P1N B;  4QND A;  1FZ6 E;  3SUO A;  3N1B A;  4EPH A;  3S9H A;  4KHY A;  3L8B A;  3J2P A;  2DY4 A;  4I9Q A;  3RMC A;  4M41 A;  3CFO A;  4KHW A;  2JPN A;  3SQ2 A;  3CFP A;  3QET A;  2E32 A;  3NE6 A;  3LZJ A;  3HP9 A;  2FW3 A;  2HD0 A;  1IG9 A;  1FZ5 E;  4FJ9 A;  1IH7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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