3HGLA

Crystal of avrptob 121-205
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
78
structure length
78
Chain Sequence
GAVAHANSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVHQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Effector protein hopAB2
publication title Crystal Structure of the Complex between Pseudomonas Effector AvrPtoB and the Tomato Pto Kinase Reveals Both a Shared and a Unique Interface Compared with AvrPto-Pto
pubmed doi rcsb
source organism Pseudomonas syringae pv. tomato
molecule tags Ligase
total genus 21
structure length 78
sequence length 78
ec nomenclature ec 6.3.2.-:
pdb deposition date 2009-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.110 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3hglA00
3TJYA 3SVIA 3HGLA 3HGKE
chains in the Genus database with same CATH superfamily
3C6PB 2E31A 4J2DA 4DTRA 1XU5E 4FJJA 3NDKA 4KHUA 4ICGC 2JH8A 1XVBE 3RMBA 2OVQB 1XVDE 2OZSA 4FJMA 1FS1A 4X5MA 4M3XA 2P1NB 3SQ1A 1FZ7E 3SUOA 4DTXA 1XVEE 2B7MA 2JHAA 1MTYG 3UO3A 4EP9A 1FPOA 4RL5A 3TAGA 1N1CA 3RMDA 3CFOA 4KHNA 3QESA 3MKSB 1FZ3E 1XL3C 3QEIA 4FK2A 4I6JB 4E4BA 3LD8A 1FYZE 3J27A 4QNCA 4EYWA 1MHYG 4FJGA 4HCBA 2OVPB 1FZ1E 4I9QA 3SQ2A 2DEBA 1WAFA 2B1EA 1XMHE 2H4TA 3LDBA 3N1EA 3NHGA 1Q9YA 3LDSA 3TJYA 4FK0A 2P5GA 1MMOG 3TAFA 3LZJA 4KI6A 4QNDA 4FJ8A 3SUNA 4M41A 1FZHE 3NGIA 3L1NA 1FZ0E 4FK4A 3SPYA 4JRPA 2OVRB 4M3UA 2JQTA 4FJLA 3QEVA 3UO2A 4FJNA 5H37A 4ADOA 3NCIA 3RMAA 3QEPA 1Q9XA 1FZ6E 2JHPA 4DU1A 2LF6A 4FJXA 4I9LA 4E3SA 1IH7A 2JHCA 4KHSA 3SQ4A 3SNNA 3J2PA 1LDKE 4M42A 3CFRA 3UIQA 2PFTA 3SQ0A 4M3RA 3QETA 2VJ5A 2P1OB 1XMFE 3L8BA 4M45A 3L0MA 2QXFA 4ADNA 3QEWA 4FJKA 1NEXB 3TABA 3OGKB 3QERA 3S9HA 1MHZG 2P1MB 2OZMA 4KHQA 2JPNA 2YB5A 3N1BA 4KI4A 1XVCE 2P5OA 3TAEA 3SUQA 1XU3E 4JRQA 4J2BA 3QNOA 4DTNA 3C6NB 2B8IA 1XMGE 2MZWB 1JW2A 2RKHA 1FZIE 2RCUA 3LZIA 4FJ7A 1XVFE 4FJ9A 2P1PB 4B08A 4DTPA 1FXXA 3C6OB 3HGKE 2JH9A 2MW2A 1FZ9E 4M3TA 1CLQA 4DTJA 3SPZA 1P22A 2E32A 1IG9A 4RG8A 4AKGA 4AKIA 3C95A 1FZ5E 2FW3A 3QEXA 3RWUA 5IBKB 3C94A 4FVMA 4JS5A 3SJJA 4X5NA 2DY4A 3CFPA 4KHYA 3OGMB 3NE6A 2ATQA 4DTOA 4FJHA 3K2OA 4JS4A 4FJ5A 4KHWA 1FZ8E 4RNGA 4DU3A 4M3ZA 2MMBA 2HD0A 4IT5A 3NAEA 1FZ4E 4DU4A 3SVIA 4DTUA 4J2EA 2P1QB 3E4YA 1XVGE 3CQ8A 4J2AA 4HCCA 3SUPA 3SI6A 2DTUA 3KD5E 2FYOA 3OGLB 5IZ7A 4DTSA 4FJIA 4EPHA 2LF3A 1WAJA 2VIXA 3TL8B 3QNNA 5IREA 3SCXA 3BVOA 3HGLA 2PFVA 1FZ2E 2K5SA 3WSOA 4GAMC 3V7DB 3HL8A 3RMCA 4AI6A 2OYQA 4M3WA 4AKHA 2VJ4A 3L2OB 3KD1E 3E4WA 3HP9A 4DTMA 4M3YA
chains in the Genus database with same CATH topology
3C6PB 2E31A 4J2DA 4DTRA 1XU5E 4FJJA 3NDKA 4KHUA 2JH8A 1XVBE 3RMBA 2OVQB 1XVDE 2OZSA 4FJMA 1FS1A 4X5MA 4M3XA 2P1NB 3SQ1A 1FZ7E 3SUOA 4DTXA 1XVEE 2B7MA 2JHAA 1MTYG 4EP9A 4RL5A 3TAGA 3RMDA 3CFOA 4KHNA 3QESA 3MKSB 1FZ3E 1XL3C 3QEIA 4FK2A 4I6JB 4E4BA 3LD8A 1FYZE 3J27A 4QNCA 4EYWA 1MHYG 4FJGA 4HCBA 2OVPB 1FZ1E 4I9QA 3SQ2A 2DEBA 1WAFA 2B1EA 1XMHE 2H4TA 3LDBA 3N1EA 3NHGA 1Q9YA 3LDSA 3TJYA 4FK0A 2P5GA 1MMOG 3TAFA 3LZJA 4KI6A 4QNDA 4FJ8A 3SUNA 4M41A 1FZHE 3NGIA 3L1NA 1FZ0E 4FK4A 3SPYA 4JRPA 2OVRB 4M3UA 4FJLA 3QEVA 4FJNA 5H37A 4ADOA 3NCIA 3RMAA 3QEPA 1Q9XA 1FZ6E 2JHPA 4DU1A 2LF6A 4FJXA 4I9LA 4E3SA 1IH7A 2JHCA 4KHSA 3SQ4A 3SNNA 3J2PA 1LDKE 4M42A 3CFRA 3UIQA 2PFTA 3SQ0A 4M3RA 3QETA 2VJ5A 2P1OB 1XMFE 3L8BA 4M45A 3L0MA 2QXFA 4ADNA 3QEWA 4FJKA 1NEXB 3TABA 3OGKB 3QERA 3S9HA 1MHZG 2P1MB 2OZMA 4KHQA 2JPNA 2YB5A 3N1BA 4KI4A 1XVCE 2P5OA 3TAEA 3SUQA 1XU3E 4JRQA 4J2BA 3QNOA 4DTNA 3C6NB 2B8IA 1XMGE 2MZWB 2RCUA 1FZIE 3LZIA 4FJ7A 1XVFE 4FJ9A 2P1PB 4B08A 4DTPA 1FXXA 3C6OB 3HGKE 2JH9A 1FZ9E 4M3TA 1CLQA 4DTJA 3SPZA 1P22A 2E32A 1IG9A 4RG8A 4AKGA 4AKIA 3C95A 1FZ5E 2FW3A 3QEXA 3RWUA 5IBKB 3C94A 4FVMA 4JS5A 3SJJA 4X5NA 2DY4A 3CFPA 4KHYA 3OGMB 3NE6A 2ATQA 4DTOA 4FJHA 3K2OA 4JS4A 4FJ5A 4KHWA 1FZ8E 4RNGA 4DU3A 4M3ZA 2MMBA 2HD0A 3NAEA 4DU4A 1FZ4E 3SVIA 4DTUA 4J2EA 2P1QB 3E4YA 1XVGE 3CQ8A 4J2AA 4HCCA 3SUPA 3SI6A 2DTUA 3KD5E 2FYOA 3OGLB 5IZ7A 4DTSA 4FJIA 4EPHA 2LF3A 1WAJA 2VIXA 3TL8B 3QNNA 5IREA 3SCXA 3HGLA 2PFVA 1FZ2E 3WSOA 4GAMC 3V7DB 3HL8A 3RMCA 4AI6A 2OYQA 4M3WA 4AKHA 2VJ4A 3L2OB 3KD1E 3E4WA 3HP9A 4DTMA 4M3YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TJY A;  3SVI A;  3HGL A;  3HGK E; 
#chains in the Genus database with same CATH topology
 3C6P B;  2E31 A;  4J2D A;  4DTR A;  1XU5 E;  4FJJ A;  3NDK A;  4KHU A;  4ICG C;  2JH8 A;  1XVB E;  3RMB A;  2OVQ B;  1XVD E;  2OZS A;  4FJM A;  1FS1 A;  4X5M A;  4M3X A;  2P1N B;  3SQ1 A;  1FZ7 E;  3SUO A;  4DTX A;  1XVE E;  2B7M A;  2JHA A;  1MTY G;  3UO3 A;  4EP9 A;  1FPO A;  4RL5 A;  3TAG A;  1N1C A;  3RMD A;  3CFO A;  4KHN A;  3QES A;  3MKS B;  1FZ3 E;  1XL3 C;  3QEI A;  4FK2 A;  4I6J B;  4E4B A;  3LD8 A;  1FYZ E;  3J27 A;  4QNC A;  4EYW A;  1MHY G;  4FJG A;  4HCB A;  2OVP B;  1FZ1 E;  4I9Q A;  3SQ2 A;  2DEB A;  1WAF A;  2B1E A;  1XMH E;  2H4T A;  3LDB A;  3N1E A;  3NHG A;  1Q9Y A;  3LDS A;  3TJY A;  4FK0 A;  2P5G A;  1MMO G;  3TAF A;  3LZJ A;  4KI6 A;  4QND A;  4FJ8 A;  3SUN A;  4M41 A;  1FZH E;  3NGI A;  3L1N A;  1FZ0 E;  4FK4 A;  3SPY A;  4JRP A;  2OVR B;  4M3U A;  2JQT A;  4FJL A;  3QEV A;  3UO2 A;  4FJN A;  5H37 A;  4ADO A;  3NCI A;  3RMA A;  3QEP A;  1Q9X A;  1FZ6 E;  2JHP A;  4DU1 A;  2LF6 A;  4FJX A;  4I9L A;  4E3S A;  1IH7 A;  2JHC A;  4KHS A;  3SQ4 A;  3SNN A;  3J2P A;  1LDK E;  4M42 A;  3CFR A;  3UIQ A;  2PFT A;  3SQ0 A;  4M3R A;  3QET A;  2VJ5 A;  2P1O B;  1XMF E;  3L8B A;  4M45 A;  3L0M A;  2QXF A;  4ADN A;  3QEW A;  4FJK A;  1NEX B;  3TAB A;  3OGK B;  3QER A;  3S9H A;  1MHZ G;  2P1M B;  2OZM A;  4KHQ A;  2JPN A;  2YB5 A;  3N1B A;  4KI4 A;  1XVC E;  2P5O A;  3TAE A;  3SUQ A;  1XU3 E;  4JRQ A;  4J2B A;  3QNO A;  4DTN A;  3C6N B;  2B8I A;  1XMG E;  2MZW B;  1JW2 A;  2RKH A;  1FZI E;  2RCU A;  3LZI A;  4FJ7 A;  1XVF E;  4FJ9 A;  2P1P B;  4B08 A;  4DTP A;  1FXX A;  3C6O B;  3HGK E;  2JH9 A;  2MW2 A;  1FZ9 E;  4M3T A;  1CLQ A;  4DTJ A;  3SPZ A;  1P22 A;  2E32 A;  1IG9 A;  4RG8 A;  4AKG A;  4AKI A;  3C95 A;  1FZ5 E;  2FW3 A;  3QEX A;  3RWU A;  5IBK B;  3C94 A;  4FVM A;  4JS5 A;  3SJJ A;  4X5N A;  2DY4 A;  3CFP A;  4KHY A;  3OGM B;  3NE6 A;  2ATQ A;  4DTO A;  4FJH A;  3K2O A;  4JS4 A;  4FJ5 A;  4KHW A;  1FZ8 E;  4RNG A;  4DU3 A;  4M3Z A;  2MMB A;  2HD0 A;  4IT5 A;  3NAE A;  1FZ4 E;  4DU4 A;  3SVI A;  4DTU A;  4J2E A;  2P1Q B;  3E4Y A;  1XVG E;  3CQ8 A;  4J2A A;  4HCC A;  3SUP A;  3SI6 A;  2DTU A;  3KD5 E;  2FYO A;  3OGL B;  5IZ7 A;  4DTS A;  4FJI A;  4EPH A;  2LF3 A;  1WAJ A;  2VIX A;  3TL8 B;  3QNN A;  5IRE A;  3SCX A;  3BVO A;  3HGL A;  2PFV A;  1FZ2 E;  2K5S A;  3WSO A;  4GAM C;  3V7D B;  3HL8 A;  3RMC A;  4AI6 A;  2OYQ A;  4M3W A;  4AKH A;  2VJ4 A;  3L2O B;  3KD1 E;  3E4W A;  3HP9 A;  4DTM A;  4M3Y A; 
#chains in the Genus database with same CATH homology
 3C6P B;  2E31 A;  4J2D A;  4DTR A;  1XU5 E;  4FJJ A;  3NDK A;  4KHU A;  2JH8 A;  1XVB E;  3RMB A;  2OVQ B;  1XVD E;  2OZS A;  4FJM A;  1FS1 A;  4X5M A;  4M3X A;  2P1N B;  3SQ1 A;  1FZ7 E;  3SUO A;  4DTX A;  1XVE E;  2B7M A;  2JHA A;  1MTY G;  4EP9 A;  4RL5 A;  3TAG A;  3RMD A;  3CFO A;  4KHN A;  3QES A;  3MKS B;  1FZ3 E;  1XL3 C;  3QEI A;  4FK2 A;  4I6J B;  4E4B A;  3LD8 A;  1FYZ E;  3J27 A;  4QNC A;  4EYW A;  1MHY G;  4FJG A;  4HCB A;  2OVP B;  1FZ1 E;  4I9Q A;  3SQ2 A;  2DEB A;  1WAF A;  2B1E A;  1XMH E;  2H4T A;  3LDB A;  3N1E A;  3NHG A;  1Q9Y A;  3LDS A;  3TJY A;  4FK0 A;  2P5G A;  1MMO G;  3TAF A;  3LZJ A;  4KI6 A;  4QND A;  4FJ8 A;  3SUN A;  4M41 A;  1FZH E;  3NGI A;  3L1N A;  1FZ0 E;  4FK4 A;  3SPY A;  4JRP A;  2OVR B;  4M3U A;  4FJL A;  3QEV A;  4FJN A;  5H37 A;  4ADO A;  3NCI A;  3RMA A;  3QEP A;  1Q9X A;  1FZ6 E;  2JHP A;  4DU1 A;  2LF6 A;  4FJX A;  4I9L A;  4E3S A;  1IH7 A;  2JHC A;  4KHS A;  3SQ4 A;  3SNN A;  3J2P A;  1LDK E;  4M42 A;  3CFR A;  3UIQ A;  2PFT A;  3SQ0 A;  4M3R A;  3QET A;  2VJ5 A;  2P1O B;  1XMF E;  3L8B A;  4M45 A;  3L0M A;  2QXF A;  4ADN A;  3QEW A;  4FJK A;  1NEX B;  3TAB A;  3OGK B;  3QER A;  3S9H A;  1MHZ G;  2P1M B;  2OZM A;  4KHQ A;  2JPN A;  2YB5 A;  3N1B A;  4KI4 A;  1XVC E;  2P5O A;  3TAE A;  3SUQ A;  1XU3 E;  4JRQ A;  4J2B A;  3QNO A;  4DTN A;  3C6N B;  2B8I A;  1XMG E;  2MZW B;  2RCU A;  1FZI E;  3LZI A;  4FJ7 A;  1XVF E;  4FJ9 A;  2P1P B;  4B08 A;  4DTP A;  1FXX A;  3C6O B;  3HGK E;  2JH9 A;  1FZ9 E;  4M3T A;  1CLQ A;  4DTJ A;  3SPZ A;  1P22 A;  2E32 A;  1IG9 A;  4RG8 A;  4AKG A;  4AKI A;  3C95 A;  1FZ5 E;  2FW3 A;  3QEX A;  3RWU A;  5IBK B;  3C94 A;  4FVM A;  4JS5 A;  3SJJ A;  4X5N A;  2DY4 A;  3CFP A;  4KHY A;  3OGM B;  3NE6 A;  2ATQ A;  4DTO A;  4FJH A;  3K2O A;  4JS4 A;  4FJ5 A;  4KHW A;  1FZ8 E;  4RNG A;  4DU3 A;  4M3Z A;  2MMB A;  2HD0 A;  3NAE A;  4DU4 A;  1FZ4 E;  3SVI A;  4DTU A;  4J2E A;  2P1Q B;  3E4Y A;  1XVG E;  3CQ8 A;  4J2A A;  4HCC A;  3SUP A;  3SI6 A;  2DTU A;  3KD5 E;  2FYO A;  3OGL B;  5IZ7 A;  4DTS A;  4FJI A;  4EPH A;  2LF3 A;  1WAJ A;  2VIX A;  3TL8 B;  3QNN A;  5IRE A;  3SCX A;  3HGL A;  2PFV A;  1FZ2 E;  3WSO A;  4GAM C;  3V7D B;  3HL8 A;  3RMC A;  4AI6 A;  2OYQ A;  4M3W A;  4AKH A;  2VJ4 A;  3L2O B;  3KD1 E;  3E4W A;  3HP9 A;  4DTM A;  4M3Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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