1XVCE

Soluble methane monooxygenase hydroxylase: 8-bromooctanol soaked structure
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
166
structure length
166
Chain Sequence
b'KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Product Bound Structures of the Soluble Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath): Protein Motion in the Alpha-Subunit
pubmed doi rcsb
molecule keywords Methane monooxygenase component A alpha chain
molecule tags Oxidoreductase
total genus 59
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2004-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xvcE01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xvcE02
1XU5E 1FZ5E 1XU3E 1XVFE 1XMHE 1XVDE 4GAMC 1XMFE 1XVCE 1FZ6E 1FZ3E 1MHZG 1XVGE 1FZ1E 1MHYG 1XVBE 1MTYG 1FZ0E 1MMOG 1FYZE 1FZ7E 1FZIE 1FZ9E 1FZHE 1XMGE 1FZ8E 1XVEE 1FZ4E 1FZ2E
chains in the Genus database with same CATH superfamily
4ADOA 3L8BA 3OGMB 4FJLA 4DTXA 3E4WA 2OZMA 4DTUA 4HCBA 3MKSB 4M3WA 4M3UA 2MMBA 3QEXA 1XMHE 2P1PB 3KD5E 4M3TA 1XMFE 2JHCA 4M3RA 4EYWA 3SUOA 2VJ5A 2FYOA 3C6NB 4DU4A 3RMCA 4AI6A 2DEBA 2HD0A 3RWUA 3QERA 4E4BA 1MTYG 3RMAA 2JH9A 4RL5A 4JRQA 1FZ7E 3OGKB 1WAFA 3SUQA 4J2DA 4EP9A 4KHUA 4EPHA 1XVEE 1FXXA 2DTUA 4M3YA 2B8IA 2PFTA 4J2EA 2P5GA 1CLQA 3C6PB 4AKGA 3LD8A 1IH7A 2YB5A 4FJ5A 3QNOA 2P5OA 2DY4A 1XU3E 3C6OB 3E4YA 3CFPA 4FJ7A 4KHSA 4FK4A 3SQ1A 4J2BA 2VJ4A 3QEVA 3QESA 4GAMC 4DU1A 3TAFA 4QNCA 4J2AA 2B1EA 4DU3A 3TJYA 4KHYA 3NAEA 2H4TA 3N1BA 4M45A 4ADNA 3CFRA 2QXFA 4DTOA 1XVBE 4FJGA 2P1NB 3L2OB 3KD1E 3QEIA 4FJ9A 1NEXB 4JRPA 2P1QB 3RMBA 3SQ4A 5H37A 3TL8B 4RG8A 2P1MB 3L1NA 3CQ8A 4DTJA 3LDBA 3C94A 4FJHA 2JHPA 4DTSA 4M41A 3NE6A 2RKHA 2JH8A 4JS5A 2OYQA 2RCUA 4AKIA 3RMDA 3K2OA 1XVFE 4B08A 3S9HA 3UO2A 3SJJA 1IG9A 1XVCE 2PFVA 3SNNA 1Q9XA 3QEPA 3C95A 4FK2A 5IBKB 1FZ6E 3WSOA 3SUNA 1FPOA 3J27A 4I9LA 1XVGE 3HGLA 4I9QA 3HGKE 4X5NA 4JS4A 3SCXA 3SPZA 4HCCA 3SI6A 4KHQA 1MHYG 1JW2A 2E31A 2MZWB 1MMOG 1FYZE 1FZIE 1FZ9E 3NHGA 3TAGA 1XMGE 3QEWA 4KHWA 1LDKE 2OVQB 1FZ2E 1P22A 5IREA 3J2PA 3QNNA 4FJNA 2MW2A 3NDKA 1XU5E 3BVOA 2E32A 3TABA 1FS1A 1FZ5E 4FJKA 2OVRB 2ATQA 3UO3A 3LDSA 4DTPA 4KHNA 4FJXA 1XL3C 3N1EA 4M3XA 3NCIA 4E3SA 3QETA 1XVDE 3UIQA 4QNDA 3TAEA 2JQTA 3LZJA 3SVIA 2JPNA 3L0MA 4FJMA 2VIXA 1Q9YA 2K5SA 4DTNA 3CFOA 4AKHA 4DTRA 2B7MA 4M3ZA 3OGLB 5IZ7A 2P1OB 2LF3A 1FZ3E 4FK0A 4KI4A 1MHZG 4FVMA 3SPYA 3V7DB 1FZ1E 4I6JB 3HL8A 1N1CA 2OVPB 1FZ0E 3SQ2A 2FW3A 1WAJA 2OZSA 4FJJA 3SQ0A 2LF6A 4FJ8A 4KI6A 1FZHE 4DTMA 4M42A 4ICGC 1FZ8E 3NGIA 4X5MA 1FZ4E 2JHAA 3SUPA 4RNGA 3HP9A 4IT5A 3LZIA 4FJIA
chains in the Genus database with same CATH topology
4ADOA 3L8BA 3OGMB 4FJLA 4DTXA 3E4WA 2OZMA 4DTUA 4HCBA 3MKSB 4M3WA 4M3UA 2MMBA 3QEXA 1XMHE 2P1PB 3KD5E 4M3TA 1XMFE 2JHCA 4M3RA 4EYWA 3SUOA 2VJ5A 2FYOA 3C6NB 4DU4A 3RMCA 4AI6A 2DEBA 2HD0A 3RWUA 3QERA 4E4BA 1MTYG 3RMAA 2JH9A 4RL5A 4JRQA 1FZ7E 3OGKB 1WAFA 3SUQA 4J2DA 4EP9A 4KHUA 4EPHA 1XVEE 1FXXA 2DTUA 4M3YA 2B8IA 2PFTA 4J2EA 2P5GA 1CLQA 3C6PB 4AKGA 3LD8A 1IH7A 2YB5A 4FJ5A 3QNOA 2P5OA 2DY4A 1XU3E 3C6OB 3E4YA 3CFPA 4FJ7A 4KHSA 4FK4A 3SQ1A 4J2BA 2VJ4A 3QEVA 3QESA 4GAMC 4DU1A 3TAFA 4QNCA 4J2AA 2B1EA 4DU3A 3TJYA 4KHYA 3NAEA 2H4TA 3N1BA 4M45A 4ADNA 3CFRA 2QXFA 4DTOA 1XVBE 4FJGA 2P1NB 3L2OB 3KD1E 3QEIA 4FJ9A 1NEXB 4JRPA 2P1QB 3RMBA 3SQ4A 5H37A 3TL8B 4RG8A 2P1MB 3L1NA 3CQ8A 4DTJA 3LDBA 3C94A 4FJHA 2JHPA 4DTSA 4M41A 3NE6A 2JH8A 4JS5A 2OYQA 2RCUA 4AKIA 3RMDA 3K2OA 1XVFE 4B08A 3S9HA 3SJJA 1IG9A 1XVCE 2PFVA 3SNNA 1Q9XA 3QEPA 3C95A 4FK2A 5IBKB 1FZ6E 3WSOA 3SUNA 4I9LA 3J27A 1XVGE 3HGLA 4I9QA 3HGKE 4X5NA 4JS4A 3SCXA 3SPZA 4HCCA 3SI6A 4KHQA 1MHYG 2E31A 2MZWB 1MMOG 1FYZE 1FZIE 1FZ9E 3NHGA 3TAGA 1XMGE 3QEWA 4KHWA 1LDKE 2OVQB 1FZ2E 1P22A 5IREA 3J2PA 3QNNA 4FJNA 3NDKA 1XU5E 2E32A 3TABA 1FS1A 1FZ5E 4FJKA 2OVRB 2ATQA 4KHNA 3LDSA 4DTPA 4FJXA 1XL3C 3N1EA 4M3XA 3NCIA 4E3SA 3QETA 1XVDE 3UIQA 4QNDA 3TAEA 3LZJA 3SVIA 2JPNA 3L0MA 4FJMA 2VIXA 1Q9YA 4DTNA 3CFOA 4AKHA 4DTRA 2B7MA 4M3ZA 3OGLB 5IZ7A 2P1OB 2LF3A 1FZ3E 4FK0A 4KI4A 1MHZG 4FVMA 3SPYA 3V7DB 1FZ1E 4I6JB 3HL8A 2OVPB 1FZ0E 3SQ2A 2FW3A 1WAJA 2OZSA 4FJJA 3SQ0A 2LF6A 4FJ8A 4KI6A 1FZHE 4DTMA 4M42A 1FZ8E 3NGIA 4X5MA 1FZ4E 2JHAA 3SUPA 4RNGA 3HP9A 3LZIA 4FJIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XU5 E;  1FZ5 E;  1XU3 E;  1XVF E;  1XMH E;  1XVD E;  4GAM C;  1XMF E;  1XVC E;  1FZ6 E;  1FZ3 E;  1MHZ G;  1XVG E;  1FZ1 E;  1MHY G;  1XVB E;  1MTY G;  1FZ0 E;  1MMO G;  1FYZ E;  1FZ7 E;  1FZI E;  1FZ9 E;  1FZH E;  1XMG E;  1FZ8 E;  1XVE E;  1FZ4 E;  1FZ2 E; 
#chains in the Genus database with same CATH topology
 4ADO A;  3L8B A;  3OGM B;  4FJL A;  4DTX A;  3E4W A;  2OZM A;  4DTU A;  4HCB A;  3MKS B;  4M3W A;  4M3U A;  2MMB A;  3QEX A;  1XMH E;  2P1P B;  3KD5 E;  4M3T A;  1XMF E;  2JHC A;  4M3R A;  4EYW A;  3SUO A;  2VJ5 A;  2FYO A;  3C6N B;  4DU4 A;  3RMC A;  4AI6 A;  2DEB A;  2HD0 A;  3RWU A;  3QER A;  4E4B A;  1MTY G;  3RMA A;  2JH9 A;  4RL5 A;  4JRQ A;  1FZ7 E;  3OGK B;  1WAF A;  3SUQ A;  4J2D A;  4EP9 A;  4KHU A;  4EPH A;  1XVE E;  1FXX A;  2DTU A;  4M3Y A;  2B8I A;  2PFT A;  4J2E A;  2P5G A;  1CLQ A;  3C6P B;  4AKG A;  3LD8 A;  1IH7 A;  2YB5 A;  4FJ5 A;  3QNO A;  2P5O A;  2DY4 A;  1XU3 E;  3C6O B;  3E4Y A;  3CFP A;  4FJ7 A;  4KHS A;  4FK4 A;  3SQ1 A;  4J2B A;  2VJ4 A;  3QEV A;  3QES A;  4GAM C;  4DU1 A;  3TAF A;  4QNC A;  4J2A A;  2B1E A;  4DU3 A;  3TJY A;  4KHY A;  3NAE A;  2H4T A;  3N1B A;  4M45 A;  4ADN A;  3CFR A;  2QXF A;  4DTO A;  1XVB E;  4FJG A;  2P1N B;  3L2O B;  3KD1 E;  3QEI A;  4FJ9 A;  1NEX B;  4JRP A;  2P1Q B;  3RMB A;  3SQ4 A;  5H37 A;  3TL8 B;  4RG8 A;  2P1M B;  3L1N A;  3CQ8 A;  4DTJ A;  3LDB A;  3C94 A;  4FJH A;  2JHP A;  4DTS A;  4M41 A;  3NE6 A;  2RKH A;  2JH8 A;  4JS5 A;  2OYQ A;  2RCU A;  4AKI A;  3RMD A;  3K2O A;  1XVF E;  4B08 A;  3S9H A;  3UO2 A;  3SJJ A;  1IG9 A;  1XVC E;  2PFV A;  3SNN A;  1Q9X A;  3QEP A;  3C95 A;  4FK2 A;  5IBK B;  1FZ6 E;  3WSO A;  3SUN A;  1FPO A;  3J27 A;  4I9L A;  1XVG E;  3HGL A;  4I9Q A;  3HGK E;  4X5N A;  4JS4 A;  3SCX A;  3SPZ A;  4HCC A;  3SI6 A;  4KHQ A;  1MHY G;  1JW2 A;  2E31 A;  2MZW B;  1MMO G;  1FYZ E;  1FZI E;  1FZ9 E;  3NHG A;  3TAG A;  1XMG E;  3QEW A;  4KHW A;  1LDK E;  2OVQ B;  1FZ2 E;  1P22 A;  5IRE A;  3J2P A;  3QNN A;  4FJN A;  2MW2 A;  3NDK A;  1XU5 E;  3BVO A;  2E32 A;  3TAB A;  1FS1 A;  1FZ5 E;  4FJK A;  2OVR B;  2ATQ A;  3UO3 A;  3LDS A;  4DTP A;  4KHN A;  4FJX A;  1XL3 C;  3N1E A;  4M3X A;  3NCI A;  4E3S A;  3QET A;  1XVD E;  3UIQ A;  4QND A;  3TAE A;  2JQT A;  3LZJ A;  3SVI A;  2JPN A;  3L0M A;  4FJM A;  2VIX A;  1Q9Y A;  2K5S A;  4DTN A;  3CFO A;  4AKH A;  4DTR A;  2B7M A;  4M3Z A;  3OGL B;  5IZ7 A;  2P1O B;  2LF3 A;  1FZ3 E;  4FK0 A;  4KI4 A;  1MHZ G;  4FVM A;  3SPY A;  3V7D B;  1FZ1 E;  4I6J B;  3HL8 A;  1N1C A;  2OVP B;  1FZ0 E;  3SQ2 A;  2FW3 A;  1WAJ A;  2OZS A;  4FJJ A;  3SQ0 A;  2LF6 A;  4FJ8 A;  4KI6 A;  1FZH E;  4DTM A;  4M42 A;  4ICG C;  1FZ8 E;  3NGI A;  4X5M A;  1FZ4 E;  2JHA A;  3SUP A;  4RNG A;  3HP9 A;  4IT5 A;  3LZI A;  4FJI A; 
#chains in the Genus database with same CATH homology
 4ADO A;  3L8B A;  3OGM B;  4FJL A;  4DTX A;  3E4W A;  2OZM A;  4DTU A;  4HCB A;  3MKS B;  4M3W A;  4M3U A;  2MMB A;  3QEX A;  1XMH E;  2P1P B;  3KD5 E;  4M3T A;  1XMF E;  2JHC A;  4M3R A;  4EYW A;  3SUO A;  2VJ5 A;  2FYO A;  3C6N B;  4DU4 A;  3RMC A;  4AI6 A;  2DEB A;  2HD0 A;  3RWU A;  3QER A;  4E4B A;  1MTY G;  3RMA A;  2JH9 A;  4RL5 A;  4JRQ A;  1FZ7 E;  3OGK B;  1WAF A;  3SUQ A;  4J2D A;  4EP9 A;  4KHU A;  4EPH A;  1XVE E;  1FXX A;  2DTU A;  4M3Y A;  2B8I A;  2PFT A;  4J2E A;  2P5G A;  1CLQ A;  3C6P B;  4AKG A;  3LD8 A;  1IH7 A;  2YB5 A;  4FJ5 A;  3QNO A;  2P5O A;  2DY4 A;  1XU3 E;  3C6O B;  3E4Y A;  3CFP A;  4FJ7 A;  4KHS A;  4FK4 A;  3SQ1 A;  4J2B A;  2VJ4 A;  3QEV A;  3QES A;  4GAM C;  4DU1 A;  3TAF A;  4QNC A;  4J2A A;  2B1E A;  4DU3 A;  3TJY A;  4KHY A;  3NAE A;  2H4T A;  3N1B A;  4M45 A;  4ADN A;  3CFR A;  2QXF A;  4DTO A;  1XVB E;  4FJG A;  2P1N B;  3L2O B;  3KD1 E;  3QEI A;  4FJ9 A;  1NEX B;  4JRP A;  2P1Q B;  3RMB A;  3SQ4 A;  5H37 A;  3TL8 B;  4RG8 A;  2P1M B;  3L1N A;  3CQ8 A;  4DTJ A;  3LDB A;  3C94 A;  4FJH A;  2JHP A;  4DTS A;  4M41 A;  3NE6 A;  2JH8 A;  4JS5 A;  2OYQ A;  2RCU A;  4AKI A;  3RMD A;  3K2O A;  1XVF E;  4B08 A;  3S9H A;  3SJJ A;  1IG9 A;  1XVC E;  2PFV A;  3SNN A;  1Q9X A;  3QEP A;  3C95 A;  4FK2 A;  5IBK B;  1FZ6 E;  3WSO A;  3SUN A;  4I9L A;  3J27 A;  1XVG E;  3HGL A;  4I9Q A;  3HGK E;  4X5N A;  4JS4 A;  3SCX A;  3SPZ A;  4HCC A;  3SI6 A;  4KHQ A;  1MHY G;  2E31 A;  2MZW B;  1MMO G;  1FYZ E;  1FZI E;  1FZ9 E;  3NHG A;  3TAG A;  1XMG E;  3QEW A;  4KHW A;  1LDK E;  2OVQ B;  1FZ2 E;  1P22 A;  5IRE A;  3J2P A;  3QNN A;  4FJN A;  3NDK A;  1XU5 E;  2E32 A;  3TAB A;  1FS1 A;  1FZ5 E;  4FJK A;  2OVR B;  2ATQ A;  4KHN A;  3LDS A;  4DTP A;  4FJX A;  1XL3 C;  3N1E A;  4M3X A;  3NCI A;  4E3S A;  3QET A;  1XVD E;  3UIQ A;  4QND A;  3TAE A;  3LZJ A;  3SVI A;  2JPN A;  3L0M A;  4FJM A;  2VIX A;  1Q9Y A;  4DTN A;  3CFO A;  4AKH A;  4DTR A;  2B7M A;  4M3Z A;  3OGL B;  5IZ7 A;  2P1O B;  2LF3 A;  1FZ3 E;  4FK0 A;  4KI4 A;  1MHZ G;  4FVM A;  3SPY A;  3V7D B;  1FZ1 E;  4I6J B;  3HL8 A;  2OVP B;  1FZ0 E;  3SQ2 A;  2FW3 A;  1WAJ A;  2OZS A;  4FJJ A;  3SQ0 A;  2LF6 A;  4FJ8 A;  4KI6 A;  1FZH E;  4DTM A;  4M42 A;  1FZ8 E;  3NGI A;  4X5M A;  1FZ4 E;  2JHA A;  3SUP A;  4RNG A;  3HP9 A;  3LZI A;  4FJI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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