1XVCE

Soluble methane monooxygenase hydroxylase: 8-bromooctanol soaked structure
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
publication title Product Bound Structures of the Soluble Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath): Protein Motion in the Alpha-Subunit
pubmed doi rcsb
molecule keywords Methane monooxygenase component A alpha chain
total genus 59
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2004-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xvcE01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xvcE02
1XVEE 1FZIE 4GAMC 1FZ3E 1FZ6E 1MHZG 1XVFE 1FZ4E 1XVCE 1XMGE 1XVGE 1FZ8E 1XU5E 1XMFE 1MHYG 1FZ2E 1FZ0E 1MMOG 1FZ5E 1FZ1E 1FZ7E 1XU3E 1FYZE 1XVDE 1FZ9E 1XVBE 1MTYG 1XMHE 1FZHE
chains in the Genus database with same CATH superfamily
4KHUA 4KHWA 3HP9A 1FZIE 3E4YA 1FZ6E 3LDSA 3MKSB 1Q9XA 1N1CA 3K2OA 1FZ4E 4I9QA 3SPYA 2K5SA 1P22A 4M45A 2RKHA 4QNDA 3SQ1A 4DU4A 3NDKA 3C6OB 4FJHA 3SJJA 4J2DA 4KI6A 3TL8B 1XMFE 3QNOA 4FJMA 1FZ2E 4RL5A 2P1MB 4AKIA 2H4TA 3TAFA 3KD1E 1MMOG 5IREA 3NHGA 1FZ1E 3CFRA 3SQ4A 3J27A 4ADNA 4FJIA 2JHAA 2FW3A 4FVMA 5H37A 3RMCA 2VIXA 4KI4A 1FXXA 4JS5A 4FJ7A 4KHQA 4FJLA 3C95A 1IH7A 3SQ0A 4FJNA 4JRPA 3OGKB 4M3XA 1XMHE 3E4WA 1NEXB 2RCUA 4JS4A 3LZJA 4X5NA 4DTXA 4KHNA 4GAMC 1FZ3E 4X5MA 3TJYA 2P5OA 3N1EA 2HD0A 3NCIA 4I6JB 3UO2A 3LZIA 4M3UA 4M3RA 4E4BA 3C94A 1XMGE 3SQ2A 3SVIA 3TAGA 3UO3A 4IT5A 4RNGA 4M3TA 1Q9YA 3HGLA 3NE6A 3SUQA 3SI6A 3CFOA 4HCCA 1JW2A 4FJ5A 2LF6A 2QXFA 3LDBA 4ADOA 3SUOA 3L1NA 4M3WA 4FJ9A 4QNCA 4EP9A 1FZ7E 1WAJA 3J2PA 4KHYA 3QETA 1XU3E 3SPZA 3C6NB 2B8IA 2PFTA 2P1OB 3V7DB 1FYZE 4DTOA 1FZ9E 4DU1A 2JQTA 4FJ8A 1XVBE 1MTYG 2B7MA 1CLQA 2OVRB 1XVEE 3QEVA 2MMBA 3LD8A 3QESA 4AKHA 4B08A 4HCBA 1MHZG 3SCXA 2ATQA 2YB5A 4ICGC 3KD5E 2LF3A 2JH9A 2E32A 1FS1A 3L2OB 3N1BA 4EYWA 1WAFA 2DY4A 1FZ8E 3OGMB 4DTSA 1XU5E 5IBKB 4DU3A 2OYQA 4FJXA 4DTPA 3QEPA 2B1EA 2PFVA 4FJJA 1FZ0E 4FK2A 3HL8A 2P5GA 2DTUA 2FYOA 4I9LA 4M41A 4DTUA 4E3SA 4DTJA 4J2EA 2JH8A 3CQ8A 4FJGA 4EPHA 2OVQB 1XVDE 4FJKA 3RMBA 3L8BA 3BVOA 5IZ7A 2DEBA 1MHYG 2OVPB 2P1NB 3C6PB 4JRQA 4AKGA 1LDKE 3S9HA 4M3YA 2MW2A 3QEIA 1XVFE 4DTMA 2P1QB 1XVCE 4KHSA 2E31A 3TAEA 1XVGE 4M3ZA 3HGKE 4J2AA 2JHCA 3QNNA 3NGIA 3QEWA 4DTNA 4RG8A 1IG9A 4DTRA 3CFPA 1XL3C 4FK0A 4FK4A 1FPOA 4M42A 3WSOA 2MZWB 3QEXA 3TABA 3RMAA 3SUPA 3RWUA 2OZMA 1FZ5E 2P1PB 3L0MA 2JPNA 3QERA 3SNNA 2VJ5A 3SUNA 3OGLB 4J2BA 3UIQA 3NAEA 2VJ4A 2JHPA 2OZSA 3RMDA 4AI6A 1FZHE
chains in the Genus database with same CATH topology
4KHUA 4KHWA 3HP9A 1FZIE 3E4YA 1FZ6E 3LDSA 3MKSB 1Q9XA 3K2OA 1FZ4E 4I9QA 3SPYA 1P22A 4M45A 4QNDA 3SQ1A 2JHPA 4DU4A 3NDKA 3C6OB 4FJHA 3SJJA 4J2DA 4KI6A 3TL8B 1XMFE 3QNOA 4FJMA 1FZ2E 4RL5A 2P1MB 4AKIA 2H4TA 3TAFA 3KD1E 1MMOG 5IREA 3NHGA 1FZ1E 3CFRA 3SQ4A 3J27A 4ADNA 4FJIA 2JHAA 2FW3A 4FVMA 5H37A 3RMCA 2VIXA 4KI4A 1FXXA 4JS5A 4FJ7A 4KHQA 4FJLA 3C95A 1IH7A 3SQ0A 4FJNA 4JRPA 3OGKB 4M3XA 1XMHE 3E4WA 1NEXB 2RCUA 4JS4A 3LZJA 4X5NA 4DTXA 4KHNA 4GAMC 1FZ3E 4X5MA 3TJYA 2P5OA 3N1EA 2HD0A 3NCIA 4I6JB 3LZIA 4M3UA 4M3RA 4E4BA 1XMGE 3SQ2A 3SVIA 3TAGA 4M3TA 4RNGA 1Q9YA 3HGLA 3NE6A 3SUQA 3SI6A 3CFOA 4HCCA 4FJ5A 2LF6A 2QXFA 3LDBA 4ADOA 3SUOA 3L1NA 4M3WA 4FJ9A 4QNCA 4EP9A 1FZ7E 1WAJA 3J2PA 4KHYA 3QETA 1XU3E 3SPZA 3C6NB 2B8IA 2PFTA 2P1OB 3V7DB 1FYZE 4DTOA 1FZ9E 4DU1A 4FJ8A 1XVBE 1MTYG 2B7MA 1CLQA 2OVRB 1XVEE 3QEVA 2MMBA 3LD8A 3QESA 4AKHA 4B08A 4HCBA 1MHZG 3SCXA 2ATQA 2YB5A 3KD5E 2LF3A 2JH9A 2E32A 1FS1A 3L2OB 3N1BA 4EYWA 1WAFA 2DY4A 1FZ8E 3OGMB 4DTSA 1XU5E 5IBKB 4DU3A 2OYQA 4FJXA 4DTPA 3QEPA 2B1EA 2PFVA 4FJJA 1FZ0E 4FK2A 3HL8A 2P5GA 2DTUA 2FYOA 4I9LA 4M41A 4DTUA 4E3SA 4DTJA 4J2EA 2JH8A 3CQ8A 4FJGA 4EPHA 2OVQB 1XVDE 4FJKA 3RMBA 3L8BA 5IZ7A 2DEBA 1MHYG 2OVPB 2P1NB 3C6PB 4JRQA 4AKGA 1LDKE 3S9HA 4M3YA 3QEIA 1XVFE 4DTMA 2P1QB 1XVCE 4KHSA 2E31A 3TAEA 1XVGE 4M3ZA 3HGKE 4J2AA 2JHCA 3QNNA 3NGIA 3QEWA 4DTNA 4RG8A 1IG9A 4DTRA 3CFPA 1XL3C 4FK0A 4FK4A 4M42A 3WSOA 2MZWB 3QEXA 3TABA 3RMAA 3SUPA 3RWUA 2OZMA 1FZ5E 2P1PB 3L0MA 2JPNA 3QERA 3SNNA 2VJ5A 3SUNA 3OGLB 4J2BA 3UIQA 3NAEA 2VJ4A 3C94A 2OZSA 3RMDA 4AI6A 1FZHE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XVE E;  1FZI E;  4GAM C;  1FZ3 E;  1FZ6 E;  1MHZ G;  1XVF E;  1FZ4 E;  1XVC E;  1XMG E;  1XVG E;  1FZ8 E;  1XU5 E;  1XMF E;  1MHY G;  1FZ2 E;  1FZ0 E;  1MMO G;  1FZ5 E;  1FZ1 E;  1FZ7 E;  1XU3 E;  1FYZ E;  1XVD E;  1FZ9 E;  1XVB E;  1MTY G;  1XMH E;  1FZH E; 
#chains in the Genus database with same CATH topology
 4KHU A;  4KHW A;  3HP9 A;  1FZI E;  3E4Y A;  1FZ6 E;  3LDS A;  3MKS B;  1Q9X A;  1N1C A;  3K2O A;  1FZ4 E;  4I9Q A;  3SPY A;  2K5S A;  1P22 A;  4M45 A;  2RKH A;  4QND A;  3SQ1 A;  4DU4 A;  3NDK A;  3C6O B;  4FJH A;  3SJJ A;  4J2D A;  4KI6 A;  3TL8 B;  1XMF E;  3QNO A;  4FJM A;  1FZ2 E;  4RL5 A;  2P1M B;  4AKI A;  2H4T A;  3TAF A;  3KD1 E;  1MMO G;  5IRE A;  3NHG A;  1FZ1 E;  3CFR A;  3SQ4 A;  3J27 A;  4ADN A;  4FJI A;  2JHA A;  2FW3 A;  4FVM A;  5H37 A;  3RMC A;  2VIX A;  4KI4 A;  1FXX A;  4JS5 A;  4FJ7 A;  4KHQ A;  4FJL A;  3C95 A;  1IH7 A;  3SQ0 A;  4FJN A;  4JRP A;  3OGK B;  4M3X A;  1XMH E;  3E4W A;  1NEX B;  2RCU A;  4JS4 A;  3LZJ A;  4X5N A;  4DTX A;  4KHN A;  4GAM C;  1FZ3 E;  4X5M A;  3TJY A;  2P5O A;  3N1E A;  2HD0 A;  3NCI A;  4I6J B;  3UO2 A;  3LZI A;  4M3U A;  4M3R A;  4E4B A;  3C94 A;  1XMG E;  3SQ2 A;  3SVI A;  3TAG A;  3UO3 A;  4IT5 A;  4RNG A;  4M3T A;  1Q9Y A;  3HGL A;  3NE6 A;  3SUQ A;  3SI6 A;  3CFO A;  4HCC A;  1JW2 A;  4FJ5 A;  2LF6 A;  2QXF A;  3LDB A;  4ADO A;  3SUO A;  3L1N A;  4M3W A;  4FJ9 A;  4QNC A;  4EP9 A;  1FZ7 E;  1WAJ A;  3J2P A;  4KHY A;  3QET A;  1XU3 E;  3SPZ A;  3C6N B;  2B8I A;  2PFT A;  2P1O B;  3V7D B;  1FYZ E;  4DTO A;  1FZ9 E;  4DU1 A;  2JQT A;  4FJ8 A;  1XVB E;  1MTY G;  2B7M A;  1CLQ A;  2OVR B;  1XVE E;  3QEV A;  2MMB A;  3LD8 A;  3QES A;  4AKH A;  4B08 A;  4HCB A;  1MHZ G;  3SCX A;  2ATQ A;  2YB5 A;  4ICG C;  3KD5 E;  2LF3 A;  2JH9 A;  2E32 A;  1FS1 A;  3L2O B;  3N1B A;  4EYW A;  1WAF A;  2DY4 A;  1FZ8 E;  3OGM B;  4DTS A;  1XU5 E;  5IBK B;  4DU3 A;  2OYQ A;  4FJX A;  4DTP A;  3QEP A;  2B1E A;  2PFV A;  4FJJ A;  1FZ0 E;  4FK2 A;  3HL8 A;  2P5G A;  2DTU A;  2FYO A;  4I9L A;  4M41 A;  4DTU A;  4E3S A;  4DTJ A;  4J2E A;  2JH8 A;  3CQ8 A;  4FJG A;  4EPH A;  2OVQ B;  1XVD E;  4FJK A;  3RMB A;  3L8B A;  3BVO A;  5IZ7 A;  2DEB A;  1MHY G;  2OVP B;  2P1N B;  3C6P B;  4JRQ A;  4AKG A;  1LDK E;  3S9H A;  4M3Y A;  2MW2 A;  3QEI A;  1XVF E;  4DTM A;  2P1Q B;  1XVC E;  4KHS A;  2E31 A;  3TAE A;  1XVG E;  4M3Z A;  3HGK E;  4J2A A;  2JHC A;  3QNN A;  3NGI A;  3QEW A;  4DTN A;  4RG8 A;  1IG9 A;  4DTR A;  3CFP A;  1XL3 C;  4FK0 A;  4FK4 A;  1FPO A;  4M42 A;  3WSO A;  2MZW B;  3QEX A;  3TAB A;  3RMA A;  3SUP A;  3RWU A;  2OZM A;  1FZ5 E;  2P1P B;  3L0M A;  2JPN A;  3QER A;  3SNN A;  2VJ5 A;  3SUN A;  3OGL B;  4J2B A;  3UIQ A;  3NAE A;  2VJ4 A;  2JHP A;  2OZS A;  3RMD A;  4AI6 A;  1FZH E; 
#chains in the Genus database with same CATH homology
 4KHU A;  4KHW A;  3HP9 A;  1FZI E;  3E4Y A;  1FZ6 E;  3LDS A;  3MKS B;  1Q9X A;  3K2O A;  1FZ4 E;  4I9Q A;  3SPY A;  1P22 A;  4M45 A;  4QND A;  3SQ1 A;  2JHP A;  4DU4 A;  3NDK A;  3C6O B;  4FJH A;  3SJJ A;  4J2D A;  4KI6 A;  3TL8 B;  1XMF E;  3QNO A;  4FJM A;  1FZ2 E;  4RL5 A;  2P1M B;  4AKI A;  2H4T A;  3TAF A;  3KD1 E;  1MMO G;  5IRE A;  3NHG A;  1FZ1 E;  3CFR A;  3SQ4 A;  3J27 A;  4ADN A;  4FJI A;  2JHA A;  2FW3 A;  4FVM A;  5H37 A;  3RMC A;  2VIX A;  4KI4 A;  1FXX A;  4JS5 A;  4FJ7 A;  4KHQ A;  4FJL A;  3C95 A;  1IH7 A;  3SQ0 A;  4FJN A;  4JRP A;  3OGK B;  4M3X A;  1XMH E;  3E4W A;  1NEX B;  2RCU A;  4JS4 A;  3LZJ A;  4X5N A;  4DTX A;  4KHN A;  4GAM C;  1FZ3 E;  4X5M A;  3TJY A;  2P5O A;  3N1E A;  2HD0 A;  3NCI A;  4I6J B;  3LZI A;  4M3U A;  4M3R A;  4E4B A;  1XMG E;  3SQ2 A;  3SVI A;  3TAG A;  4M3T A;  4RNG A;  1Q9Y A;  3HGL A;  3NE6 A;  3SUQ A;  3SI6 A;  3CFO A;  4HCC A;  4FJ5 A;  2LF6 A;  2QXF A;  3LDB A;  4ADO A;  3SUO A;  3L1N A;  4M3W A;  4FJ9 A;  4QNC A;  4EP9 A;  1FZ7 E;  1WAJ A;  3J2P A;  4KHY A;  3QET A;  1XU3 E;  3SPZ A;  3C6N B;  2B8I A;  2PFT A;  2P1O B;  3V7D B;  1FYZ E;  4DTO A;  1FZ9 E;  4DU1 A;  4FJ8 A;  1XVB E;  1MTY G;  2B7M A;  1CLQ A;  2OVR B;  1XVE E;  3QEV A;  2MMB A;  3LD8 A;  3QES A;  4AKH A;  4B08 A;  4HCB A;  1MHZ G;  3SCX A;  2ATQ A;  2YB5 A;  3KD5 E;  2LF3 A;  2JH9 A;  2E32 A;  1FS1 A;  3L2O B;  3N1B A;  4EYW A;  1WAF A;  2DY4 A;  1FZ8 E;  3OGM B;  4DTS A;  1XU5 E;  5IBK B;  4DU3 A;  2OYQ A;  4FJX A;  4DTP A;  3QEP A;  2B1E A;  2PFV A;  4FJJ A;  1FZ0 E;  4FK2 A;  3HL8 A;  2P5G A;  2DTU A;  2FYO A;  4I9L A;  4M41 A;  4DTU A;  4E3S A;  4DTJ A;  4J2E A;  2JH8 A;  3CQ8 A;  4FJG A;  4EPH A;  2OVQ B;  1XVD E;  4FJK A;  3RMB A;  3L8B A;  5IZ7 A;  2DEB A;  1MHY G;  2OVP B;  2P1N B;  3C6P B;  4JRQ A;  4AKG A;  1LDK E;  3S9H A;  4M3Y A;  3QEI A;  1XVF E;  4DTM A;  2P1Q B;  1XVC E;  4KHS A;  2E31 A;  3TAE A;  1XVG E;  4M3Z A;  3HGK E;  4J2A A;  2JHC A;  3QNN A;  3NGI A;  3QEW A;  4DTN A;  4RG8 A;  1IG9 A;  4DTR A;  3CFP A;  1XL3 C;  4FK0 A;  4FK4 A;  4M42 A;  3WSO A;  2MZW B;  3QEX A;  3TAB A;  3RMA A;  3SUP A;  3RWU A;  2OZM A;  1FZ5 E;  2P1P B;  3L0M A;  2JPN A;  3QER A;  3SNN A;  2VJ5 A;  3SUN A;  3OGL B;  4J2B A;  3UIQ A;  3NAE A;  2VJ4 A;  3C94 A;  2OZS A;  3RMD A;  4AI6 A;  1FZH E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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