5IBKB

Skp1-f-box in complex with a ubiquitin variant
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
46
structure length
46
Chain Sequence
QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
source organism Homo sapiens
publication title Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1-F-box interface.
pubmed doi rcsb
molecule keywords S-phase kinase-associated protein 1,S-phase kinase-associate
total genus 15
structure length 46
sequence length 46
chains with identical sequence E
ec nomenclature
pdb deposition date 2016-02-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 5ibkB00
2P1QB 3C6NB 2E32A 2P1PB 3C6OB 1P22A 2OVPB 4I6JB 3OGMB 3WSOA 2P1MB 3OGKB 3OGLB 5IBKB 1LDKE 1NEXB 2E31A 2OVRB 2P1NB 3C6PB 2OVQB 2P1OB 3V7DB 3L2OB 1FS1A 3MKSB
chains in the Genus database with same CATH superfamily
2P1QB 3C6NB 3J2PA 4EPHA 4FJXA 2OZSA 3NCIA 4FJ5A 4DTSA 4FJ8A 4X5MA 4EYWA 2B1EA 4RNGA 1XU5E 3SI6A 3RMBA 5IZ7A 3SPYA 4M3TA 3C95A 2DY4A 1FZHE 2QXFA 3S9HA 4M3WA 4RL5A 4EP9A 5IBKB 2B8IA 3UO2A 4KI6A 3LZIA 3NE6A 4FJJA 1XMFE 1FZ6E 3SVIA 3LZJA 4JS5A 1IH7A 2E31A 4FJMA 3SJJA 3NDKA 4DTOA 1FZ2E 1XVFE 1WAJA 2HD0A 3E4WA 4B08A 3QEWA 3SCXA 2P1OB 1IG9A 3KD5E 3J27A 3LDSA 3UIQA 3QEPA 2RKHA 3CFPA 1FS1A 4QNDA 5IREA 4ADNA 2JHAA 3QNOA 4KHUA 3HGLA 2P5OA 1FZ4E 1WAFA 2VIXA 2E32A 4RG8A 1JW2A 2P1PB 1N1CA 4FJHA 3LD8A 4DTXA 4FJ7A 3TAGA 4JRQA 1FPOA 4E3SA 3QETA 2OZMA 2DTUA 1XVCE 4I6JB 2DEBA 3N1EA 3QEXA 4AKGA 3QEVA 3SNNA 2P5GA 3SUOA 2JH8A 3E4YA 2VJ4A 1FZ7E 1FYZE 1FZ0E 1FZIE 3LDBA 4FJLA 2P1NB 4FVMA 3QESA 3SPZA 1XL3C 4M41A 1XVBE 3C94A 2FYOA 1Q9YA 3V7DB 3L2OB 3CFOA 1FZ8E 4M45A 2K5SA 1XMGE 4FJKA 4FJNA 3TL8B 4KI4A 4HCBA 4KHWA 3L0MA 4FK2A 3RMAA 4AKHA 4M3XA 4ADOA 2JQTA 4X5NA 4KHSA 1XU3E 4J2DA 3TJYA 4DU1A 3K2OA 3SUNA 2JHPA 3HP9A 2H4TA 2LF6A 3WSOA 3NGIA 4M3ZA 3BVOA 3QERA 3SQ0A 4I9QA 3OGLB 2ATQA 4JRPA 2JHCA 3QEIA 4M3UA 4ICGC 3L1NA 3HGKE 5H37A 4GAMC 3SUPA 4QNCA 2FW3A 4DU4A 4M42A 3L8BA 1FZ5E 2JPNA 3NAEA 4E4BA 3TAEA 1MHZG 4J2EA 4FJ9A 3TAFA 3RWUA 4M3YA 4DTPA 4FK0A 2VJ5A 4J2AA 2PFTA 1P22A 2B7MA 3C6OB 4I9LA 3RMDA 1FZ9E 3SQ1A 1FXXA 2YB5A 2OVPB 1Q9XA 3RMCA 2LF3A 2PFVA 1FZ1E 4KHQA 4KHNA 4J2BA 4M3RA 4DTJA 3MKSB 3CFRA 3UO3A 4JS4A 4DTUA 3OGMB 4DTNA 4HCCA 1FZ3E 4IT5A 1XVEE 4AI6A 2P1MB 3OGKB 4FJIA 1LDKE 1MMOG 4FK4A 1NEXB 2RCUA 2MMBA 4AKIA 1MTYG 2OVRB 3NHGA 3SQ2A 2MW2A 3C6PB 2OVQB 1XVDE 3CQ8A 3SUQA 4KHYA 4DU3A 2MZWB 3SQ4A 2OYQA 3KD1E 3QNNA 1CLQA 1XMHE 4DTRA 3N1BA 4FJGA 3TABA 1XVGE 4DTMA 2JH9A 1MHYG 3HL8A
chains in the Genus database with same CATH topology
2P1QB 3C6NB 3J2PA 4EPHA 4FJXA 2OZSA 3NCIA 4FJ5A 4DTSA 4FJ8A 4X5MA 4EYWA 2B1EA 4RNGA 1XU5E 3SI6A 3RMBA 5IZ7A 3SPYA 4M3TA 3C95A 2DY4A 1FZHE 2QXFA 3S9HA 4M3WA 4RL5A 4EP9A 5IBKB 2B8IA 4KI6A 3LZIA 3NE6A 4FJJA 1XMFE 1FZ6E 3SVIA 3LZJA 4JS5A 1IH7A 2E31A 4FJMA 3SJJA 3NDKA 4DTOA 1FZ2E 1XVFE 1WAJA 2HD0A 3E4WA 4B08A 3QEWA 3SCXA 2P1OB 1IG9A 3KD5E 3J27A 3LDSA 3UIQA 3QEPA 3CFPA 1FS1A 4QNDA 5IREA 4ADNA 2JHAA 3QNOA 4KHUA 3HGLA 2P5OA 1FZ4E 1WAFA 2VIXA 2E32A 4RG8A 2P1PB 4FJHA 3LD8A 4DTXA 4FJ7A 3TAGA 4JRQA 4E3SA 3QETA 2OZMA 2DTUA 1XVCE 4I6JB 2DEBA 3N1EA 3QEXA 4AKGA 3QEVA 3SNNA 2P5GA 3SUOA 2JH8A 3E4YA 2VJ4A 1FZ7E 1FYZE 1FZ0E 1FZIE 3LDBA 4FJLA 2P1NB 4FVMA 3QESA 3SPZA 1XL3C 4M41A 1XVBE 3C94A 2FYOA 1Q9YA 3V7DB 3L2OB 3CFOA 1FZ8E 4M45A 1XMGE 4FJKA 4FJNA 3TL8B 4KI4A 4HCBA 4KHWA 3L0MA 4FK2A 3RMAA 4AKHA 4M3XA 4ADOA 4X5NA 4KHSA 1XU3E 4J2DA 3TJYA 4DU1A 3K2OA 3SUNA 2JHPA 3HP9A 2H4TA 2LF6A 3WSOA 3NGIA 4M3ZA 3QERA 3SQ0A 4I9QA 3OGLB 2ATQA 4JRPA 2JHCA 3QEIA 4M3UA 3L1NA 3HGKE 5H37A 4GAMC 3SUPA 4QNCA 2FW3A 4DU4A 4M42A 3L8BA 1FZ5E 2JPNA 3NAEA 4E4BA 3TAEA 1MHZG 4J2EA 4FJ9A 3TAFA 3RWUA 4M3YA 4DTPA 4FK0A 2VJ5A 4J2AA 2PFTA 1P22A 2B7MA 3C6OB 4I9LA 3RMDA 1FZ9E 3SQ1A 1FXXA 2YB5A 2OVPB 1Q9XA 3RMCA 2LF3A 2PFVA 1FZ1E 4KHQA 4KHNA 4J2BA 4M3RA 4DTJA 3MKSB 3CFRA 4JS4A 4DTUA 3OGMB 4DTNA 4HCCA 1FZ3E 4AI6A 1XVEE 2P1MB 3OGKB 4FJIA 1LDKE 1MMOG 4FK4A 1NEXB 2RCUA 2MMBA 4AKIA 1MTYG 2OVRB 3NHGA 3SQ2A 3C6PB 2OVQB 1XVDE 3CQ8A 3SUQA 4KHYA 4DU3A 2MZWB 3SQ4A 2OYQA 3KD1E 3QNNA 1CLQA 1XMHE 4DTRA 3N1BA 4FJGA 3TABA 1XVGE 4DTMA 2JH9A 1MHYG 3HL8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P1Q B;  3C6N B;  2E32 A;  2P1P B;  3C6O B;  1P22 A;  2OVP B;  4I6J B;  3OGM B;  3WSO A;  2P1M B;  3OGK B;  3OGL B;  5IBK B;  1LDK E;  1NEX B;  2E31 A;  2OVR B;  2P1N B;  3C6P B;  2OVQ B;  2P1O B;  3V7D B;  3L2O B;  1FS1 A;  3MKS B; 
#chains in the Genus database with same CATH topology
 2P1Q B;  3C6N B;  3J2P A;  4EPH A;  4FJX A;  2OZS A;  3NCI A;  4FJ5 A;  4DTS A;  4FJ8 A;  4X5M A;  4EYW A;  2B1E A;  4RNG A;  1XU5 E;  3SI6 A;  3RMB A;  5IZ7 A;  3SPY A;  4M3T A;  3C95 A;  2DY4 A;  1FZH E;  2QXF A;  3S9H A;  4M3W A;  4RL5 A;  4EP9 A;  5IBK B;  2B8I A;  3UO2 A;  4KI6 A;  3LZI A;  3NE6 A;  4FJJ A;  1XMF E;  1FZ6 E;  3SVI A;  3LZJ A;  4JS5 A;  1IH7 A;  2E31 A;  4FJM A;  3SJJ A;  3NDK A;  4DTO A;  1FZ2 E;  1XVF E;  1WAJ A;  2HD0 A;  3E4W A;  4B08 A;  3QEW A;  3SCX A;  2P1O B;  1IG9 A;  3KD5 E;  3J27 A;  3LDS A;  3UIQ A;  3QEP A;  2RKH A;  3CFP A;  1FS1 A;  4QND A;  5IRE A;  4ADN A;  2JHA A;  3QNO A;  4KHU A;  3HGL A;  2P5O A;  1FZ4 E;  1WAF A;  2VIX A;  2E32 A;  4RG8 A;  1JW2 A;  2P1P B;  1N1C A;  4FJH A;  3LD8 A;  4DTX A;  4FJ7 A;  3TAG A;  4JRQ A;  1FPO A;  4E3S A;  3QET A;  2OZM A;  2DTU A;  1XVC E;  4I6J B;  2DEB A;  3N1E A;  3QEX A;  4AKG A;  3QEV A;  3SNN A;  2P5G A;  3SUO A;  2JH8 A;  3E4Y A;  2VJ4 A;  1FZ7 E;  1FYZ E;  1FZ0 E;  1FZI E;  3LDB A;  4FJL A;  2P1N B;  4FVM A;  3QES A;  3SPZ A;  1XL3 C;  4M41 A;  1XVB E;  3C94 A;  2FYO A;  1Q9Y A;  3V7D B;  3L2O B;  3CFO A;  1FZ8 E;  4M45 A;  2K5S A;  1XMG E;  4FJK A;  4FJN A;  3TL8 B;  4KI4 A;  4HCB A;  4KHW A;  3L0M A;  4FK2 A;  3RMA A;  4AKH A;  4M3X A;  4ADO A;  2JQT A;  4X5N A;  4KHS A;  1XU3 E;  4J2D A;  3TJY A;  4DU1 A;  3K2O A;  3SUN A;  2JHP A;  3HP9 A;  2H4T A;  2LF6 A;  3WSO A;  3NGI A;  4M3Z A;  3BVO A;  3QER A;  3SQ0 A;  4I9Q A;  3OGL B;  2ATQ A;  4JRP A;  2JHC A;  3QEI A;  4M3U A;  4ICG C;  3L1N A;  3HGK E;  5H37 A;  4GAM C;  3SUP A;  4QNC A;  2FW3 A;  4DU4 A;  4M42 A;  3L8B A;  1FZ5 E;  2JPN A;  3NAE A;  4E4B A;  3TAE A;  1MHZ G;  4J2E A;  4FJ9 A;  3TAF A;  3RWU A;  4M3Y A;  4DTP A;  4FK0 A;  2VJ5 A;  4J2A A;  2PFT A;  1P22 A;  2B7M A;  3C6O B;  4I9L A;  3RMD A;  1FZ9 E;  3SQ1 A;  1FXX A;  2YB5 A;  2OVP B;  1Q9X A;  3RMC A;  2LF3 A;  2PFV A;  1FZ1 E;  4KHQ A;  4KHN A;  4J2B A;  4M3R A;  4DTJ A;  3MKS B;  3CFR A;  3UO3 A;  4JS4 A;  4DTU A;  3OGM B;  4DTN A;  4HCC A;  1FZ3 E;  4IT5 A;  1XVE E;  4AI6 A;  2P1M B;  3OGK B;  4FJI A;  1LDK E;  1MMO G;  4FK4 A;  1NEX B;  2RCU A;  2MMB A;  4AKI A;  1MTY G;  2OVR B;  3NHG A;  3SQ2 A;  2MW2 A;  3C6P B;  2OVQ B;  1XVD E;  3CQ8 A;  3SUQ A;  4KHY A;  4DU3 A;  2MZW B;  3SQ4 A;  2OYQ A;  3KD1 E;  3QNN A;  1CLQ A;  1XMH E;  4DTR A;  3N1B A;  4FJG A;  3TAB A;  1XVG E;  4DTM A;  2JH9 A;  1MHY G;  3HL8 A; 
#chains in the Genus database with same CATH homology
 2P1Q B;  3C6N B;  3J2P A;  4EPH A;  4FJX A;  2OZS A;  3NCI A;  4FJ5 A;  4DTS A;  4FJ8 A;  4X5M A;  4EYW A;  2B1E A;  4RNG A;  1XU5 E;  3SI6 A;  3RMB A;  5IZ7 A;  3SPY A;  4M3T A;  3C95 A;  2DY4 A;  1FZH E;  2QXF A;  3S9H A;  4M3W A;  4RL5 A;  4EP9 A;  5IBK B;  2B8I A;  4KI6 A;  3LZI A;  3NE6 A;  4FJJ A;  1XMF E;  1FZ6 E;  3SVI A;  3LZJ A;  4JS5 A;  1IH7 A;  2E31 A;  4FJM A;  3SJJ A;  3NDK A;  4DTO A;  1FZ2 E;  1XVF E;  1WAJ A;  2HD0 A;  3E4W A;  4B08 A;  3QEW A;  3SCX A;  2P1O B;  1IG9 A;  3KD5 E;  3J27 A;  3LDS A;  3UIQ A;  3QEP A;  3CFP A;  1FS1 A;  4QND A;  5IRE A;  4ADN A;  2JHA A;  3QNO A;  4KHU A;  3HGL A;  2P5O A;  1FZ4 E;  1WAF A;  2VIX A;  2E32 A;  4RG8 A;  2P1P B;  4FJH A;  3LD8 A;  4DTX A;  4FJ7 A;  3TAG A;  4JRQ A;  4E3S A;  3QET A;  2OZM A;  2DTU A;  1XVC E;  4I6J B;  2DEB A;  3N1E A;  3QEX A;  4AKG A;  3QEV A;  3SNN A;  2P5G A;  3SUO A;  2JH8 A;  3E4Y A;  2VJ4 A;  1FZ7 E;  1FYZ E;  1FZ0 E;  1FZI E;  3LDB A;  4FJL A;  2P1N B;  4FVM A;  3QES A;  3SPZ A;  1XL3 C;  4M41 A;  1XVB E;  3C94 A;  2FYO A;  1Q9Y A;  3V7D B;  3L2O B;  3CFO A;  1FZ8 E;  4M45 A;  1XMG E;  4FJK A;  4FJN A;  3TL8 B;  4KI4 A;  4HCB A;  4KHW A;  3L0M A;  4FK2 A;  3RMA A;  4AKH A;  4M3X A;  4ADO A;  4X5N A;  4KHS A;  1XU3 E;  4J2D A;  3TJY A;  4DU1 A;  3K2O A;  3SUN A;  2JHP A;  3HP9 A;  2H4T A;  2LF6 A;  3WSO A;  3NGI A;  4M3Z A;  3QER A;  3SQ0 A;  4I9Q A;  3OGL B;  2ATQ A;  4JRP A;  2JHC A;  3QEI A;  4M3U A;  3L1N A;  3HGK E;  5H37 A;  4GAM C;  3SUP A;  4QNC A;  2FW3 A;  4DU4 A;  4M42 A;  3L8B A;  1FZ5 E;  2JPN A;  3NAE A;  4E4B A;  3TAE A;  1MHZ G;  4J2E A;  4FJ9 A;  3TAF A;  3RWU A;  4M3Y A;  4DTP A;  4FK0 A;  2VJ5 A;  4J2A A;  2PFT A;  1P22 A;  2B7M A;  3C6O B;  4I9L A;  3RMD A;  1FZ9 E;  3SQ1 A;  1FXX A;  2YB5 A;  2OVP B;  1Q9X A;  3RMC A;  2LF3 A;  2PFV A;  1FZ1 E;  4KHQ A;  4KHN A;  4J2B A;  4M3R A;  4DTJ A;  3MKS B;  3CFR A;  4JS4 A;  4DTU A;  3OGM B;  4DTN A;  4HCC A;  1FZ3 E;  4AI6 A;  1XVE E;  2P1M B;  3OGK B;  4FJI A;  1LDK E;  1MMO G;  4FK4 A;  1NEX B;  2RCU A;  2MMB A;  4AKI A;  1MTY G;  2OVR B;  3NHG A;  3SQ2 A;  3C6P B;  2OVQ B;  1XVD E;  3CQ8 A;  3SUQ A;  4KHY A;  4DU3 A;  2MZW B;  3SQ4 A;  2OYQ A;  3KD1 E;  3QNN A;  1CLQ A;  1XMH E;  4DTR A;  3N1B A;  4FJG A;  3TAB A;  1XVG E;  4DTM A;  2JH9 A;  1MHY G;  3HL8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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