2MW2A

Hha-h-ns46 charge zipper complex
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
67
structure length
67
Chain Sequence
LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
source organism Escherichia coli k-12
publication title A Three-protein Charge Zipper Stabilizes a Complex Modulating Bacterial Gene Silencing.
pubmed doi rcsb
molecule keywords Hemolysin expression-modulating protein Hha
total genus 20
structure length 67
sequence length 67
ec nomenclature
pdb deposition date 2014-10-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05321 HHA Haemolysin expression modulating protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.40 Mainly Alpha Up-down Bundle Monooxygenase HHA 2mw2A00
2K5SA 2JQTA 2MW2A 1JW2A 4ICGC
chains in the Genus database with same CATH superfamily
3SUNA 1XU3E 2DY4A 1FS1A 1FZ1E 1FZ5E 2JH8A 4J2EA 2YB5A 3NE6A 1XMHE 3TL8B 3QEPA 4EPHA 2E32A 1MHYG 4E4BA 4DTSA 2FYOA 1FZ6E 1P22A 2PFTA 2VJ4A 4JS4A 2PFVA 3RMAA 4DTUA 2P1QB 4FJHA 4FJJA 2JHPA 2P1MB 3SQ0A 2B1EA 1IG9A 3RWUA 1Q9XA 4M3XA 2DTUA 2B8IA 4AI6A 1CLQA 3NCIA 3LD8A 4AKHA 4HCCA 4DU3A 2ATQA 2VJ5A 2FW3A 4FJGA 2E31A 4KHNA 3UO3A 4KHUA 4RNGA 1FZ9E 1XMFE 1NEXB 2JH9A 4JRPA 2P5OA 3MKSB 3UIQA 4X5MA 4J2AA 1FZ2E 4HCBA 4QNDA 3QEIA 3N1BA 5IBKB 1FZ3E 4DTNA 4RG8A 3QERA 3TAGA 4FJKA 3C6PB 3QEVA 3SUQA 4M3TA 3TAEA 3V7DB 3OGMB 3SUPA 4DTMA 5H37A 4GAMC 1FZIE 3SQ2A 2JHAA 2H4TA 2OVRB 1WAJA 4DTPA 3SNNA 4EP9A 3NHGA 2LF3A 3SI6A 3J27A 4FJNA 3HGKE 2MW2A 2RCUA 4B08A 2OVQB 3S9HA 2P5GA 4I9LA 4IT5A 4FJIA 4KHWA 4ADNA 3QETA 4J2BA 4KI6A 2OZSA 3K2OA 2K5SA 3WSOA 1FZHE 4DU1A 3QEXA 3J2PA 3SJJA 1MMOG 4DU4A 4FJXA 3NGIA 3CFRA 4KHYA 4FJLA 2P1PB 1FZ0E 1XU5E 3SVIA 4J2DA 4KI4A 4KHQA 1IH7A 3QNNA 3RMDA 3OGKB 3SQ1A 1FZ7E 2P1OB 3L2OB 3E4YA 4I6JB 4M42A 2JQTA 3LDBA 3C6OB 3QNOA 3RMBA 2MMBA 2OZMA 4FJ7A 3OGLB 4FK2A 4KHSA 3HL8A 1FXXA 2VIXA 3L0MA 3QESA 2OVPB 3SQ4A 1LDKE 3KD1E 3TJYA 4FJ5A 2HD0A 3RMCA 4M3RA 4FJ9A 3BVOA 1XMGE 3CQ8A 3LDSA 1FZ8E 3NDKA 4FJMA 4FK0A 4M41A 2RKHA 1FPOA 4M3ZA 3L8BA 2JHCA 3C95A 4AKGA 1FZ4E 4EYWA 3C94A 2P1NB 4DTRA 5IZ7A 1JW2A 4M45A 1MTYG 1XVFE 3CFOA 3CFPA 2MZWB 4X5NA 4I9QA 4DTOA 4JS5A 3N1EA 4FK4A 4ADOA 1Q9YA 3C6NB 3L1NA 3E4WA 3HP9A 3LZIA 4FJ8A 2QXFA 4M3WA 4AKIA 1N1CA 1XL3C 3UO2A 1XVCE 2B7MA 4RL5A 4DTJA 2JPNA 3TAFA 1XVBE 3TABA 3SPZA 2OYQA 4ICGC 4FVMA 4M3YA 3SCXA 3QEWA 1FYZE 1XVDE 1MHZG 3SUOA 4DTXA 4E3SA 3HGLA 1XVEE 4M3UA 5IREA 2LF6A 4QNCA 3LZJA 4JRQA 3KD5E 3NAEA 2DEBA 3SPYA 1WAFA 1XVGE
chains in the Genus database with same CATH topology
2K5SA 2JQTA 2MW2A 1JW2A 4ICGC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K5S A;  2JQT A;  2MW2 A;  1JW2 A;  4ICG C; 
#chains in the Genus database with same CATH topology
 3SUN A;  1XU3 E;  2DY4 A;  1FS1 A;  1FZ1 E;  1FZ5 E;  2JH8 A;  4J2E A;  2YB5 A;  3NE6 A;  1XMH E;  3TL8 B;  3QEP A;  4EPH A;  2E32 A;  1MHY G;  4E4B A;  4DTS A;  2FYO A;  1FZ6 E;  1P22 A;  2PFT A;  2VJ4 A;  4JS4 A;  2PFV A;  3RMA A;  4DTU A;  2P1Q B;  4FJH A;  4FJJ A;  2JHP A;  2P1M B;  3SQ0 A;  2B1E A;  1IG9 A;  3RWU A;  1Q9X A;  4M3X A;  2DTU A;  2B8I A;  4AI6 A;  1CLQ A;  3NCI A;  3LD8 A;  4AKH A;  4HCC A;  4DU3 A;  2ATQ A;  2VJ5 A;  2FW3 A;  4FJG A;  2E31 A;  4KHN A;  3UO3 A;  4KHU A;  4RNG A;  1FZ9 E;  1XMF E;  1NEX B;  2JH9 A;  4JRP A;  2P5O A;  3MKS B;  3UIQ A;  4X5M A;  4J2A A;  1FZ2 E;  4HCB A;  4QND A;  3QEI A;  3N1B A;  5IBK B;  1FZ3 E;  4DTN A;  4RG8 A;  3QER A;  3TAG A;  4FJK A;  3C6P B;  3QEV A;  3SUQ A;  4M3T A;  3TAE A;  3V7D B;  3OGM B;  3SUP A;  4DTM A;  5H37 A;  4GAM C;  1FZI E;  3SQ2 A;  2JHA A;  2H4T A;  2OVR B;  1WAJ A;  4DTP A;  3SNN A;  4EP9 A;  3NHG A;  2LF3 A;  3SI6 A;  3J27 A;  4FJN A;  3HGK E;  2MW2 A;  2RCU A;  4B08 A;  2OVQ B;  3S9H A;  2P5G A;  4I9L A;  4IT5 A;  4FJI A;  4KHW A;  4ADN A;  3QET A;  4J2B A;  4KI6 A;  2OZS A;  3K2O A;  2K5S A;  3WSO A;  1FZH E;  4DU1 A;  3QEX A;  3J2P A;  3SJJ A;  1MMO G;  4DU4 A;  4FJX A;  3NGI A;  3CFR A;  4KHY A;  4FJL A;  2P1P B;  1FZ0 E;  1XU5 E;  3SVI A;  4J2D A;  4KI4 A;  4KHQ A;  1IH7 A;  3QNN A;  3RMD A;  3OGK B;  3SQ1 A;  1FZ7 E;  2P1O B;  3L2O B;  3E4Y A;  4I6J B;  4M42 A;  2JQT A;  3LDB A;  3C6O B;  3QNO A;  3RMB A;  2MMB A;  2OZM A;  4FJ7 A;  3OGL B;  4FK2 A;  4KHS A;  3HL8 A;  1FXX A;  2VIX A;  3L0M A;  3QES A;  2OVP B;  3SQ4 A;  1LDK E;  3KD1 E;  3TJY A;  4FJ5 A;  2HD0 A;  3RMC A;  4M3R A;  4FJ9 A;  3BVO A;  1XMG E;  3CQ8 A;  3LDS A;  1FZ8 E;  3NDK A;  4FJM A;  4FK0 A;  4M41 A;  2RKH A;  1FPO A;  4M3Z A;  3L8B A;  2JHC A;  3C95 A;  4AKG A;  1FZ4 E;  4EYW A;  3C94 A;  2P1N B;  4DTR A;  5IZ7 A;  1JW2 A;  4M45 A;  1MTY G;  1XVF E;  3CFO A;  3CFP A;  2MZW B;  4X5N A;  4I9Q A;  4DTO A;  4JS5 A;  3N1E A;  4FK4 A;  4ADO A;  1Q9Y A;  3C6N B;  3L1N A;  3E4W A;  3HP9 A;  3LZI A;  4FJ8 A;  2QXF A;  4M3W A;  4AKI A;  1N1C A;  1XL3 C;  3UO2 A;  1XVC E;  2B7M A;  4RL5 A;  4DTJ A;  2JPN A;  3TAF A;  1XVB E;  3TAB A;  3SPZ A;  2OYQ A;  4ICG C;  4FVM A;  4M3Y A;  3SCX A;  3QEW A;  1FYZ E;  1XVD E;  1MHZ G;  3SUO A;  4DTX A;  4E3S A;  3HGL A;  1XVE E;  4M3U A;  5IRE A;  2LF6 A;  4QNC A;  3LZJ A;  4JRQ A;  3KD5 E;  3NAE A;  2DEB A;  3SPY A;  1WAF A;  1XVG E; 
#chains in the Genus database with same CATH homology
 2K5S A;  2JQT A;  2MW2 A;  1JW2 A;  4ICG C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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