4X5MA

Crystal structure of semisweet in the inward-open conformation
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
86
structure length
86
Chain Sequence
DTILLTGLFAAFFTTFAFAPQSIKTIRTRNTEGISVVMYIMFLTGVISWIAYGIMRSDFAVLIANIVTLFLAAPVLVITLINRRKK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein
source organism Escherichia coli umea 3162-1
publication title Structural basis for the facilitative diffusion mechanism by SemiSWEET transporter
pubmed doi rcsb
molecule keywords Uncharacterized protein
total genus 32
structure length 86
sequence length 86
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04193 PQ-loop PQ loop repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.290 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 4x5mA00
4X5MA 4RNGA 4QNCA 4X5NA 4QNDA
chains in the Genus database with same CATH superfamily
2OVRB 3C94A 3SQ2A 3SNNA 3SPZA 2JPNA 1FZ4E 4I9LA 3RMCA 4AKIA 3OGMB 4M41A 1P22A 4B08A 4EYWA 4ADNA 3WSOA 2JQTA 1FZ0E 3OGLB 1XVBE 4M3RA 3SUNA 4FJGA 4KHYA 1FZ1E 3N1EA 2PFTA 3L1NA 1Q9YA 1CLQA 4FJ8A 3SUPA 3SQ1A 3L8BA 1MHYG 1FZ5E 4DTXA 1XU5E 4HCBA 4RL5A 4DTPA 3S9HA 4DTMA 3UO3A 3C6OB 3LDSA 2P1QB 3TAEA 2E31A 2P1PB 1IH7A 1XVEE 3SJJA 2H4TA 4GAMC 3NCIA 4KHNA 3N1BA 1FZ2E 2K5SA 3NHGA 3LD8A 1LDKE 4J2AA 2MZWB 1FZIE 4DTOA 2LF3A 1WAJA 3HL8A 4DTSA 4DTRA 1IG9A 4DTJA 1FPOA 4FJLA 4FK4A 4FJMA 3CQ8A 4HCCA 2RKHA 4RNGA 3UO2A 4FVMA 2P5GA 3SPYA 4I6JB 2PFVA 3TL8B 3QNOA 4J2DA 3CFPA 4M3XA 2OVPB 5IREA 2QXFA 3TAGA 3SUQA 1JW2A 3C6NB 3QETA 1MMOG 1XMFE 3CFRA 1XMHE 2B8IA 2JHAA 2VJ4A 2HD0A 3E4YA 3QEXA 2E32A 1FS1A 3LZJA 2RCUA 1XL3C 1N1CA 2JHCA 3RWUA 4FJ7A 3CFOA 3QNNA 3BVOA 3TAFA 4KI6A 2MW2A 3QEWA 3TABA 2OZMA 1XVDE 3V7DB 3HGKE 4JRQA 2DEBA 1FXXA 4JS4A 3LDBA 3J2PA 2FYOA 4ADOA 2DTUA 4J2BA 3C6PB 4FJ9A 1XMGE 3QEIA 3K2OA 4M3YA 4FJKA 4M3ZA 3HGLA 2P1OB 2VJ5A 2OYQA 4KHSA 4KHUA 3LZIA 1Q9XA 3RMBA 5H37A 4AI6A 1FZ8E 2B7MA 4E4BA 2VIXA 4I9QA 2YB5A 3TJYA 2DY4A 2ATQA 4AKHA 1FYZE 4IT5A 4RG8A 2OVQB 3NGIA 4FK2A 4M42A 1FZ3E 1FZHE 3SQ0A 2P5OA 4KHWA 2B1EA 1XVGE 4E3SA 4DU1A 4FJHA 4ICGC 1FZ7E 4FK0A 3C95A 3RMAA 4FJJA 3NE6A 3SI6A 4M3UA 3KD5E 1XU3E 4DU4A 3RMDA 4KHQA 1NEXB 3NDKA 3OGKB 4JS5A 4FJIA 4AKGA 4J2EA 1WAFA 4JRPA 4X5MA 1MTYG 1XVCE 2LF6A 4M45A 3NAEA 2JHPA 4DTUA 3L2OB 2FW3A 2MMBA 3SQ4A 3SVIA 3QEPA 4X5NA 3SUOA 4FJNA 5IZ7A 4M3TA 3MKSB 3UIQA 1FZ9E 1MHZG 3HP9A 2P1MB 2JH9A 4FJXA 4KI4A 3KD1E 5IBKB 4FJ5A 4M3WA 3QEVA 2JH8A 4EPHA 2P1NB 3J27A 3L0MA 3QERA 2OZSA 4DTNA 1FZ6E 3E4WA 4EP9A 4DU3A 4QNCA 3SCXA 1XVFE 4QNDA 3QESA
chains in the Genus database with same CATH topology
2OVRB 3C94A 3SQ2A 3SNNA 3SPZA 2JPNA 1FZ4E 4I9LA 3RMCA 4AKIA 3OGMB 4M41A 1P22A 4B08A 4EYWA 4ADNA 3WSOA 3SUNA 1FZ0E 3OGLB 1XVBE 4M3RA 4FJGA 4KHYA 1FZ1E 3N1EA 2PFTA 3L1NA 1Q9YA 1CLQA 4FJ8A 3SUPA 3SQ1A 3L8BA 1MHYG 1FZ5E 4DTXA 1XU5E 4HCBA 4RL5A 4DTPA 3S9HA 4DTMA 3C6OB 3LDSA 2P1QB 3TAEA 2E31A 2P1PB 1IH7A 1XVEE 3SJJA 2H4TA 4GAMC 3NCIA 4KHNA 3N1BA 1FZ2E 3NHGA 3LD8A 1LDKE 4J2AA 2MZWB 1FZIE 4DTOA 2LF3A 1WAJA 3HL8A 4DTSA 4DTRA 1IG9A 4DTJA 4FJLA 4FK4A 4FJMA 3CQ8A 4HCCA 4RNGA 4J2DA 4FVMA 2P5GA 3SPYA 4I6JB 2PFVA 3TL8B 3QNOA 4M3XA 3CFPA 2OVPB 5IREA 2QXFA 3TAGA 3SUQA 3C6NB 3QETA 1MMOG 1XMFE 3CFRA 1XMHE 2B8IA 2JHAA 2VJ4A 2HD0A 3E4YA 3QEXA 2E32A 1FS1A 3LZJA 2RCUA 1XL3C 2JHCA 3RWUA 4FJ7A 3CFOA 3QNNA 3TAFA 4KI6A 3QEWA 3TABA 2OZMA 1XVDE 3V7DB 3HGKE 4JRQA 2DEBA 1FXXA 4JS4A 3LDBA 3J2PA 2FYOA 4ADOA 2DTUA 4J2BA 3C6PB 4FJ9A 1XMGE 3QEIA 3K2OA 4M3YA 4FJKA 4M3ZA 3HGLA 2P1OB 2VJ5A 2OYQA 4KHSA 4KHUA 3LZIA 1Q9XA 3RMBA 5H37A 4AI6A 1FZ8E 2B7MA 4E4BA 2VIXA 4I9QA 2YB5A 3TJYA 2DY4A 2ATQA 4AKHA 1FYZE 4RG8A 2OVQB 3NGIA 4FK2A 4M42A 1FZ3E 1FZHE 3SQ0A 2P5OA 4KHWA 2B1EA 1XVGE 4E3SA 4DU1A 4FJHA 1FZ7E 4FK0A 3C95A 3RMAA 4FJJA 3NE6A 3SI6A 4M3UA 3KD5E 1XU3E 4DU4A 3RMDA 4KHQA 1NEXB 3NDKA 3OGKB 4JS5A 4FJIA 4AKGA 4J2EA 1WAFA 4JRPA 4X5MA 1MTYG 1XVCE 2LF6A 4M45A 3NAEA 2JHPA 4DTUA 3L2OB 2FW3A 2MMBA 3SQ4A 3SVIA 3QEPA 4X5NA 3SUOA 4FJNA 5IZ7A 4M3TA 3MKSB 3UIQA 1FZ9E 1MHZG 3HP9A 2P1MB 2JH9A 4FJXA 4KI4A 3KD1E 5IBKB 4FJ5A 4M3WA 3QEVA 2JH8A 4EPHA 2P1NB 3J27A 3L0MA 3QERA 2OZSA 4DTNA 1FZ6E 3E4WA 4EP9A 4DU3A 4QNCA 3SCXA 1XVFE 4QNDA 3QESA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X5M A;  4RNG A;  4QNC A;  4X5N A;  4QND A; 
#chains in the Genus database with same CATH topology
 2OVR B;  3C94 A;  3SQ2 A;  3SNN A;  3SPZ A;  2JPN A;  1FZ4 E;  4I9L A;  3RMC A;  4AKI A;  3OGM B;  4M41 A;  1P22 A;  4B08 A;  4EYW A;  4ADN A;  3WSO A;  2JQT A;  1FZ0 E;  3OGL B;  1XVB E;  4M3R A;  3SUN A;  4FJG A;  4KHY A;  1FZ1 E;  3N1E A;  2PFT A;  3L1N A;  1Q9Y A;  1CLQ A;  4FJ8 A;  3SUP A;  3SQ1 A;  3L8B A;  1MHY G;  1FZ5 E;  4DTX A;  1XU5 E;  4HCB A;  4RL5 A;  4DTP A;  3S9H A;  4DTM A;  3UO3 A;  3C6O B;  3LDS A;  2P1Q B;  3TAE A;  2E31 A;  2P1P B;  1IH7 A;  1XVE E;  3SJJ A;  2H4T A;  4GAM C;  3NCI A;  4KHN A;  3N1B A;  1FZ2 E;  2K5S A;  3NHG A;  3LD8 A;  1LDK E;  4J2A A;  2MZW B;  1FZI E;  4DTO A;  2LF3 A;  1WAJ A;  3HL8 A;  4DTS A;  4DTR A;  1IG9 A;  4DTJ A;  1FPO A;  4FJL A;  4FK4 A;  4FJM A;  3CQ8 A;  4HCC A;  2RKH A;  4RNG A;  3UO2 A;  4FVM A;  2P5G A;  3SPY A;  4I6J B;  2PFV A;  3TL8 B;  3QNO A;  4J2D A;  3CFP A;  4M3X A;  2OVP B;  5IRE A;  2QXF A;  3TAG A;  3SUQ A;  1JW2 A;  3C6N B;  3QET A;  1MMO G;  1XMF E;  3CFR A;  1XMH E;  2B8I A;  2JHA A;  2VJ4 A;  2HD0 A;  3E4Y A;  3QEX A;  2E32 A;  1FS1 A;  3LZJ A;  2RCU A;  1XL3 C;  1N1C A;  2JHC A;  3RWU A;  4FJ7 A;  3CFO A;  3QNN A;  3BVO A;  3TAF A;  4KI6 A;  2MW2 A;  3QEW A;  3TAB A;  2OZM A;  1XVD E;  3V7D B;  3HGK E;  4JRQ A;  2DEB A;  1FXX A;  4JS4 A;  3LDB A;  3J2P A;  2FYO A;  4ADO A;  2DTU A;  4J2B A;  3C6P B;  4FJ9 A;  1XMG E;  3QEI A;  3K2O A;  4M3Y A;  4FJK A;  4M3Z A;  3HGL A;  2P1O B;  2VJ5 A;  2OYQ A;  4KHS A;  4KHU A;  3LZI A;  1Q9X A;  3RMB A;  5H37 A;  4AI6 A;  1FZ8 E;  2B7M A;  4E4B A;  2VIX A;  4I9Q A;  2YB5 A;  3TJY A;  2DY4 A;  2ATQ A;  4AKH A;  1FYZ E;  4IT5 A;  4RG8 A;  2OVQ B;  3NGI A;  4FK2 A;  4M42 A;  1FZ3 E;  1FZH E;  3SQ0 A;  2P5O A;  4KHW A;  2B1E A;  1XVG E;  4E3S A;  4DU1 A;  4FJH A;  4ICG C;  1FZ7 E;  4FK0 A;  3C95 A;  3RMA A;  4FJJ A;  3NE6 A;  3SI6 A;  4M3U A;  3KD5 E;  1XU3 E;  4DU4 A;  3RMD A;  4KHQ A;  1NEX B;  3NDK A;  3OGK B;  4JS5 A;  4FJI A;  4AKG A;  4J2E A;  1WAF A;  4JRP A;  4X5M A;  1MTY G;  1XVC E;  2LF6 A;  4M45 A;  3NAE A;  2JHP A;  4DTU A;  3L2O B;  2FW3 A;  2MMB A;  3SQ4 A;  3SVI A;  3QEP A;  4X5N A;  3SUO A;  4FJN A;  5IZ7 A;  4M3T A;  3MKS B;  3UIQ A;  1FZ9 E;  1MHZ G;  3HP9 A;  2P1M B;  2JH9 A;  4FJX A;  4KI4 A;  3KD1 E;  5IBK B;  4FJ5 A;  4M3W A;  3QEV A;  2JH8 A;  4EPH A;  2P1N B;  3J27 A;  3L0M A;  3QER A;  2OZS A;  4DTN A;  1FZ6 E;  3E4W A;  4EP9 A;  4DU3 A;  4QNC A;  3SCX A;  1XVF E;  4QND A;  3QES A; 
#chains in the Genus database with same CATH homology
 2OVR B;  3C94 A;  3SQ2 A;  3SNN A;  3SPZ A;  2JPN A;  1FZ4 E;  4I9L A;  3RMC A;  4AKI A;  3OGM B;  4M41 A;  1P22 A;  4B08 A;  4EYW A;  4ADN A;  3WSO A;  3SUN A;  1FZ0 E;  3OGL B;  1XVB E;  4M3R A;  4FJG A;  4KHY A;  1FZ1 E;  3N1E A;  2PFT A;  3L1N A;  1Q9Y A;  1CLQ A;  4FJ8 A;  3SUP A;  3SQ1 A;  3L8B A;  1MHY G;  1FZ5 E;  4DTX A;  1XU5 E;  4HCB A;  4RL5 A;  4DTP A;  3S9H A;  4DTM A;  3C6O B;  3LDS A;  2P1Q B;  3TAE A;  2E31 A;  2P1P B;  1IH7 A;  1XVE E;  3SJJ A;  2H4T A;  4GAM C;  3NCI A;  4KHN A;  3N1B A;  1FZ2 E;  3NHG A;  3LD8 A;  1LDK E;  4J2A A;  2MZW B;  1FZI E;  4DTO A;  2LF3 A;  1WAJ A;  3HL8 A;  4DTS A;  4DTR A;  1IG9 A;  4DTJ A;  4FJL A;  4FK4 A;  4FJM A;  3CQ8 A;  4HCC A;  4RNG A;  4J2D A;  4FVM A;  2P5G A;  3SPY A;  4I6J B;  2PFV A;  3TL8 B;  3QNO A;  4M3X A;  3CFP A;  2OVP B;  5IRE A;  2QXF A;  3TAG A;  3SUQ A;  3C6N B;  3QET A;  1MMO G;  1XMF E;  3CFR A;  1XMH E;  2B8I A;  2JHA A;  2VJ4 A;  2HD0 A;  3E4Y A;  3QEX A;  2E32 A;  1FS1 A;  3LZJ A;  2RCU A;  1XL3 C;  2JHC A;  3RWU A;  4FJ7 A;  3CFO A;  3QNN A;  3TAF A;  4KI6 A;  3QEW A;  3TAB A;  2OZM A;  1XVD E;  3V7D B;  3HGK E;  4JRQ A;  2DEB A;  1FXX A;  4JS4 A;  3LDB A;  3J2P A;  2FYO A;  4ADO A;  2DTU A;  4J2B A;  3C6P B;  4FJ9 A;  1XMG E;  3QEI A;  3K2O A;  4M3Y A;  4FJK A;  4M3Z A;  3HGL A;  2P1O B;  2VJ5 A;  2OYQ A;  4KHS A;  4KHU A;  3LZI A;  1Q9X A;  3RMB A;  5H37 A;  4AI6 A;  1FZ8 E;  2B7M A;  4E4B A;  2VIX A;  4I9Q A;  2YB5 A;  3TJY A;  2DY4 A;  2ATQ A;  4AKH A;  1FYZ E;  4RG8 A;  2OVQ B;  3NGI A;  4FK2 A;  4M42 A;  1FZ3 E;  1FZH E;  3SQ0 A;  2P5O A;  4KHW A;  2B1E A;  1XVG E;  4E3S A;  4DU1 A;  4FJH A;  1FZ7 E;  4FK0 A;  3C95 A;  3RMA A;  4FJJ A;  3NE6 A;  3SI6 A;  4M3U A;  3KD5 E;  1XU3 E;  4DU4 A;  3RMD A;  4KHQ A;  1NEX B;  3NDK A;  3OGK B;  4JS5 A;  4FJI A;  4AKG A;  4J2E A;  1WAF A;  4JRP A;  4X5M A;  1MTY G;  1XVC E;  2LF6 A;  4M45 A;  3NAE A;  2JHP A;  4DTU A;  3L2O B;  2FW3 A;  2MMB A;  3SQ4 A;  3SVI A;  3QEP A;  4X5N A;  3SUO A;  4FJN A;  5IZ7 A;  4M3T A;  3MKS B;  3UIQ A;  1FZ9 E;  1MHZ G;  3HP9 A;  2P1M B;  2JH9 A;  4FJX A;  4KI4 A;  3KD1 E;  5IBK B;  4FJ5 A;  4M3W A;  3QEV A;  2JH8 A;  4EPH A;  2P1N B;  3J27 A;  3L0M A;  3QER A;  2OZS A;  4DTN A;  1FZ6 E;  3E4W A;  4EP9 A;  4DU3 A;  4QNC A;  3SCX A;  1XVF E;  4QND A;  3QES A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...