2B8IA

Crystal structure and functional studies reveal that pas factor from vibrio vulnificus is a novel member of the saposin-fold family
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
77
structure length
77
Chain Sequence
IRPYMKALIYETLVNLANQDPEQHATIRQNLYEQLDLPFDKQLALYAGALGPASSGKLENHEAISNAVDSVVQLLEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid binding protein
molecule keywords PAS factor
publication title Crystal structure and functional studies reveal that PAS factor from Vibrio vulnificus is a novel member of the saposin-fold family
pubmed doi rcsb
source organism Vibrio vulnificus
total genus 27
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 2005-10-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.100 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 2b8iA00
2B8IA
chains in the Genus database with same CATH superfamily
3TAGA 4KHYA 5IREA 3SQ4A 3UIQA 5H37A 3N1EA 1MTYG 4JRPA 3LZJA 4JS5A 4M41A 2RKHA 2HD0A 4J2AA 4HCBA 2E31A 2P1QB 4M3XA 4RNGA 3C6NB 3KD5E 4FVMA 3LD8A 4RG8A 2PFTA 4FJ8A 2P5OA 1XU5E 2P1NB 2RCUA 1FZ0E 2LF6A 1MMOG 1IG9A 3TAFA 4X5MA 1WAJA 3L8BA 3KD1E 3S9HA 3SQ0A 2JHPA 3UO2A 4DTUA 4KI4A 3QNNA 4FJ9A 3BVOA 1MHYG 2B1EA 3RMAA 4GAMC 3SUQA 3L2OB 4JS4A 4M3WA 3HP9A 2FW3A 3NGIA 3CQ8A 1FZ2E 2B8IA 4AKGA 4EP9A 1P22A 3SPZA 3TJYA 3QEIA 2OZSA 4EYWA 1LDKE 1FZIE 4KI6A 3SVIA 1FPOA 4ICGC 4M3TA 4M3UA 3QEXA 1XL3C 1FZ6E 4DTMA 1XVDE 4FJLA 3J27A 4DU1A 4DU4A 2P1PB 3C94A 3OGLB 3LDSA 4FJGA 1XVBE 4FJHA 3LZIA 4DTOA 1FZHE 3NDKA 3NCIA 2LF3A 4M45A 3SPYA 3SJJA 4KHUA 1FXXA 4FK2A 3QEWA 4ADOA 2P5GA 3QETA 3RMDA 4DTPA 2OVQB 4AI6A 4DTRA 3SI6A 1FZ9E 3RWUA 2MMBA 1FZ8E 2PFVA 4M3YA 3NE6A 4DTSA 4E4BA 2VJ4A 4FJNA 3SNNA 4KHNA 3QNOA 3CFPA 4J2BA 3E4WA 3TAEA 4FK4A 2P1OB 3QEVA 1FZ5E 2DEBA 1XMGE 3HGKE 3SUPA 4FJJA 4KHWA 4B08A 4KHQA 1JW2A 3SUOA 4FJMA 3C95A 3C6OB 4IT5A 2JH8A 4I6JB 4HCCA 4FK0A 3OGMB 4M3RA 2OYQA 2QXFA 1IH7A 3C6PB 2ATQA 3N1BA 2JQTA 2K5SA 2P1MB 4FJ7A 4X5NA 1XVGE 3SQ2A 1XVCE 1WAFA 3K2OA 1CLQA 1Q9YA 4I9LA 2JPNA 3QERA 3E4YA 4AKHA 5IBKB 4J2EA 2OZMA 4DTJA 3LDBA 4DU3A 1FYZE 1FZ1E 4QNDA 3TL8B 3UO3A 4E3SA 1N1CA 2H4TA 3QESA 3QEPA 1Q9XA 4FJIA 2YB5A 3WSOA 4DTNA 2E32A 2B7MA 2OVPB 2MW2A 4ADNA 2VIXA 3HL8A 3L1NA 3TABA 3CFOA 4QNCA 4FJ5A 3SQ1A 1FS1A 1FZ4E 1XMHE 2JHAA 2JHCA 3NAEA 4J2DA 2DY4A 3OGKB 1XMFE 1XVFE 1XVEE 3J2PA 5IZ7A 3CFRA 4AKIA 2JH9A 1FZ7E 3V7DB 1MHZG 4JRQA 3RMCA 3MKSB 4M3ZA 3L0MA 3RMBA 4FJXA 1FZ3E 1NEXB 2OVRB 2DTUA 2VJ5A 3SCXA 4FJKA 2MZWB 4KHSA 3SUNA 4EPHA 4DTXA 2FYOA 4I9QA 4M42A 3HGLA 1XU3E 4RL5A 3NHGA
chains in the Genus database with same CATH topology
3TAGA 4KHYA 5IREA 3SQ4A 3UIQA 5H37A 3N1EA 1MTYG 4JRPA 3LZJA 4JS5A 4M41A 2HD0A 4J2AA 4HCBA 2E31A 2P1QB 4M3XA 4RNGA 3C6NB 3KD5E 4FVMA 3LD8A 4RG8A 2PFTA 4FJ8A 2P5OA 1XU5E 2P1NB 2RCUA 1FZ0E 2LF6A 1MMOG 1IG9A 3TAFA 4X5MA 1WAJA 3L8BA 3KD1E 3S9HA 3SQ0A 2JHPA 4DTUA 4KI4A 3QNNA 4FJ9A 1MHYG 2B1EA 3RMAA 4GAMC 3SUQA 3L2OB 4JS4A 4M3WA 3HP9A 2FW3A 3NGIA 3CQ8A 1FZ2E 2B8IA 4AKGA 4EP9A 1P22A 3SPZA 3TJYA 3QEIA 2OZSA 4EYWA 1LDKE 1FZIE 4KI6A 3SVIA 4M3TA 4M3UA 3QEXA 1XL3C 1FZ6E 4DTMA 1XVDE 4FJLA 3J27A 4DU1A 4DU4A 2P1PB 3C94A 3OGLB 3LDSA 4FJGA 1XVBE 4FJHA 3LZIA 4DTOA 1FZHE 3NDKA 3NCIA 2LF3A 4M45A 3SPYA 3SJJA 4KHUA 1FXXA 4FK2A 3QEWA 4ADOA 2P5GA 3QETA 3RMDA 4DTPA 2OVQB 4AI6A 4DTRA 3SI6A 1FZ9E 3RWUA 2MMBA 1FZ8E 2PFVA 4M3YA 3NE6A 4DTSA 4E4BA 2VJ4A 4FJNA 3SNNA 4KHNA 3QNOA 3CFPA 3E4WA 4FK4A 2P1OB 3QEVA 1FZ5E 2DEBA 1XMGE 3HGKE 3SUPA 4FJJA 4KHWA 4B08A 4KHQA 3SUOA 4FJMA 3C95A 3C6OB 2JH8A 4I6JB 4HCCA 4FK0A 3OGMB 4M3RA 2OYQA 2QXFA 1IH7A 3C6PB 2ATQA 3N1BA 2P1MB 4FJ7A 4X5NA 1XVGE 3SQ2A 1XVCE 1WAFA 3K2OA 1CLQA 1Q9YA 4I9LA 2JPNA 3QERA 3E4YA 4AKHA 5IBKB 4J2EA 2OZMA 4DTJA 3LDBA 4DU3A 1FYZE 1FZ1E 4QNDA 3TL8B 4E3SA 3QESA 3QEPA 2H4TA 1Q9XA 4FJIA 4J2BA 2YB5A 3WSOA 4DTNA 2E32A 2B7MA 2OVPB 4ADNA 3TAEA 2VIXA 3HL8A 3L1NA 3TABA 3CFOA 4QNCA 4FJ5A 3SQ1A 1FS1A 1FZ4E 1XMHE 2JHAA 2JHCA 3NAEA 4J2DA 2DY4A 3OGKB 1XMFE 1XVFE 1XVEE 3J2PA 5IZ7A 3CFRA 4AKIA 2JH9A 1FZ7E 3V7DB 1MHZG 4JRQA 3RMCA 3MKSB 4M3ZA 3L0MA 3RMBA 4FJXA 1FZ3E 1NEXB 2OVRB 2DTUA 2VJ5A 3SCXA 4FJKA 2MZWB 4KHSA 3SUNA 4EPHA 4DTXA 2FYOA 4I9QA 4M42A 3HGLA 1XU3E 4RL5A 3NHGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2B8I A; 
#chains in the Genus database with same CATH topology
 3TAG A;  4KHY A;  5IRE A;  3SQ4 A;  3UIQ A;  5H37 A;  3N1E A;  1MTY G;  4JRP A;  3LZJ A;  4JS5 A;  4M41 A;  2RKH A;  2HD0 A;  4J2A A;  4HCB A;  2E31 A;  2P1Q B;  4M3X A;  4RNG A;  3C6N B;  3KD5 E;  4FVM A;  3LD8 A;  4RG8 A;  2PFT A;  4FJ8 A;  2P5O A;  1XU5 E;  2P1N B;  2RCU A;  1FZ0 E;  2LF6 A;  1MMO G;  1IG9 A;  3TAF A;  4X5M A;  1WAJ A;  3L8B A;  3KD1 E;  3S9H A;  3SQ0 A;  2JHP A;  3UO2 A;  4DTU A;  4KI4 A;  3QNN A;  4FJ9 A;  3BVO A;  1MHY G;  2B1E A;  3RMA A;  4GAM C;  3SUQ A;  3L2O B;  4JS4 A;  4M3W A;  3HP9 A;  2FW3 A;  3NGI A;  3CQ8 A;  1FZ2 E;  2B8I A;  4AKG A;  4EP9 A;  1P22 A;  3SPZ A;  3TJY A;  3QEI A;  2OZS A;  4EYW A;  1LDK E;  1FZI E;  4KI6 A;  3SVI A;  1FPO A;  4ICG C;  4M3T A;  4M3U A;  3QEX A;  1XL3 C;  1FZ6 E;  4DTM A;  1XVD E;  4FJL A;  3J27 A;  4DU1 A;  4DU4 A;  2P1P B;  3C94 A;  3OGL B;  3LDS A;  4FJG A;  1XVB E;  4FJH A;  3LZI A;  4DTO A;  1FZH E;  3NDK A;  3NCI A;  2LF3 A;  4M45 A;  3SPY A;  3SJJ A;  4KHU A;  1FXX A;  4FK2 A;  3QEW A;  4ADO A;  2P5G A;  3QET A;  3RMD A;  4DTP A;  2OVQ B;  4AI6 A;  4DTR A;  3SI6 A;  1FZ9 E;  3RWU A;  2MMB A;  1FZ8 E;  2PFV A;  4M3Y A;  3NE6 A;  4DTS A;  4E4B A;  2VJ4 A;  4FJN A;  3SNN A;  4KHN A;  3QNO A;  3CFP A;  4J2B A;  3E4W A;  3TAE A;  4FK4 A;  2P1O B;  3QEV A;  1FZ5 E;  2DEB A;  1XMG E;  3HGK E;  3SUP A;  4FJJ A;  4KHW A;  4B08 A;  4KHQ A;  1JW2 A;  3SUO A;  4FJM A;  3C95 A;  3C6O B;  4IT5 A;  2JH8 A;  4I6J B;  4HCC A;  4FK0 A;  3OGM B;  4M3R A;  2OYQ A;  2QXF A;  1IH7 A;  3C6P B;  2ATQ A;  3N1B A;  2JQT A;  2K5S A;  2P1M B;  4FJ7 A;  4X5N A;  1XVG E;  3SQ2 A;  1XVC E;  1WAF A;  3K2O A;  1CLQ A;  1Q9Y A;  4I9L A;  2JPN A;  3QER A;  3E4Y A;  4AKH A;  5IBK B;  4J2E A;  2OZM A;  4DTJ A;  3LDB A;  4DU3 A;  1FYZ E;  1FZ1 E;  4QND A;  3TL8 B;  3UO3 A;  4E3S A;  1N1C A;  2H4T A;  3QES A;  3QEP A;  1Q9X A;  4FJI A;  2YB5 A;  3WSO A;  4DTN A;  2E32 A;  2B7M A;  2OVP B;  2MW2 A;  4ADN A;  2VIX A;  3HL8 A;  3L1N A;  3TAB A;  3CFO A;  4QNC A;  4FJ5 A;  3SQ1 A;  1FS1 A;  1FZ4 E;  1XMH E;  2JHA A;  2JHC A;  3NAE A;  4J2D A;  2DY4 A;  3OGK B;  1XMF E;  1XVF E;  1XVE E;  3J2P A;  5IZ7 A;  3CFR A;  4AKI A;  2JH9 A;  1FZ7 E;  3V7D B;  1MHZ G;  4JRQ A;  3RMC A;  3MKS B;  4M3Z A;  3L0M A;  3RMB A;  4FJX A;  1FZ3 E;  1NEX B;  2OVR B;  2DTU A;  2VJ5 A;  3SCX A;  4FJK A;  2MZW B;  4KHS A;  3SUN A;  4EPH A;  4DTX A;  2FYO A;  4I9Q A;  4M42 A;  3HGL A;  1XU3 E;  4RL5 A;  3NHG A; 
#chains in the Genus database with same CATH homology
 3TAG A;  4KHY A;  5IRE A;  3SQ4 A;  3UIQ A;  5H37 A;  3N1E A;  1MTY G;  4JRP A;  3LZJ A;  4JS5 A;  4M41 A;  2HD0 A;  4J2A A;  4HCB A;  2E31 A;  2P1Q B;  4M3X A;  4RNG A;  3C6N B;  3KD5 E;  4FVM A;  3LD8 A;  4RG8 A;  2PFT A;  4FJ8 A;  2P5O A;  1XU5 E;  2P1N B;  2RCU A;  1FZ0 E;  2LF6 A;  1MMO G;  1IG9 A;  3TAF A;  4X5M A;  1WAJ A;  3L8B A;  3KD1 E;  3S9H A;  3SQ0 A;  2JHP A;  4DTU A;  4KI4 A;  3QNN A;  4FJ9 A;  1MHY G;  2B1E A;  3RMA A;  4GAM C;  3SUQ A;  3L2O B;  4JS4 A;  4M3W A;  3HP9 A;  2FW3 A;  3NGI A;  3CQ8 A;  1FZ2 E;  2B8I A;  4AKG A;  4EP9 A;  1P22 A;  3SPZ A;  3TJY A;  3QEI A;  2OZS A;  4EYW A;  1LDK E;  1FZI E;  4KI6 A;  3SVI A;  4M3T A;  4M3U A;  3QEX A;  1XL3 C;  1FZ6 E;  4DTM A;  1XVD E;  4FJL A;  3J27 A;  4DU1 A;  4DU4 A;  2P1P B;  3C94 A;  3OGL B;  3LDS A;  4FJG A;  1XVB E;  4FJH A;  3LZI A;  4DTO A;  1FZH E;  3NDK A;  3NCI A;  2LF3 A;  4M45 A;  3SPY A;  3SJJ A;  4KHU A;  1FXX A;  4FK2 A;  3QEW A;  4ADO A;  2P5G A;  3QET A;  3RMD A;  4DTP A;  2OVQ B;  4AI6 A;  4DTR A;  3SI6 A;  1FZ9 E;  3RWU A;  2MMB A;  1FZ8 E;  2PFV A;  4M3Y A;  3NE6 A;  4DTS A;  4E4B A;  2VJ4 A;  4FJN A;  3SNN A;  4KHN A;  3QNO A;  3CFP A;  3E4W A;  4FK4 A;  2P1O B;  3QEV A;  1FZ5 E;  2DEB A;  1XMG E;  3HGK E;  3SUP A;  4FJJ A;  4KHW A;  4B08 A;  4KHQ A;  3SUO A;  4FJM A;  3C95 A;  3C6O B;  2JH8 A;  4I6J B;  4HCC A;  4FK0 A;  3OGM B;  4M3R A;  2OYQ A;  2QXF A;  1IH7 A;  3C6P B;  2ATQ A;  3N1B A;  2P1M B;  4FJ7 A;  4X5N A;  1XVG E;  3SQ2 A;  1XVC E;  1WAF A;  3K2O A;  1CLQ A;  1Q9Y A;  4I9L A;  2JPN A;  3QER A;  3E4Y A;  4AKH A;  5IBK B;  4J2E A;  2OZM A;  4DTJ A;  3LDB A;  4DU3 A;  1FYZ E;  1FZ1 E;  4QND A;  3TL8 B;  4E3S A;  3QES A;  3QEP A;  2H4T A;  1Q9X A;  4FJI A;  4J2B A;  2YB5 A;  3WSO A;  4DTN A;  2E32 A;  2B7M A;  2OVP B;  4ADN A;  3TAE A;  2VIX A;  3HL8 A;  3L1N A;  3TAB A;  3CFO A;  4QNC A;  4FJ5 A;  3SQ1 A;  1FS1 A;  1FZ4 E;  1XMH E;  2JHA A;  2JHC A;  3NAE A;  4J2D A;  2DY4 A;  3OGK B;  1XMF E;  1XVF E;  1XVE E;  3J2P A;  5IZ7 A;  3CFR A;  4AKI A;  2JH9 A;  1FZ7 E;  3V7D B;  1MHZ G;  4JRQ A;  3RMC A;  3MKS B;  4M3Z A;  3L0M A;  3RMB A;  4FJX A;  1FZ3 E;  1NEX B;  2OVR B;  2DTU A;  2VJ5 A;  3SCX A;  4FJK A;  2MZW B;  4KHS A;  3SUN A;  4EPH A;  4DTX A;  2FYO A;  4I9Q A;  4M42 A;  3HGL A;  1XU3 E;  4RL5 A;  3NHG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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