4RNGA

Crystal structure of a bacterial homologue of sweet transporters
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
82
structure length
82
Chain Sequence
DLNNLIGIIAGAITTSALIPQALKIYKTKSARDVSLAMFIFMAIGITLWFFYGVLIKEIPVILANLISLILIFLIIFMKIRY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords MtN3/saliva family
publication title Crystal structure of a bacterial homologue of SWEET transporters.
pubmed doi rcsb
source organism Thermodesulfovibrio yellowstonii
molecule tags Sugar binding protein
total genus 34
structure length 82
sequence length 82
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2014-10-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04193 PQ-loop PQ loop repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.290 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 4rngA00
4RNGA 4QNDA 4QNCA 4X5NA 4X5MA
chains in the Genus database with same CATH superfamily
2JHCA 4FK4A 2PFTA 1MHZG 1CLQA 2MZWB 1XMGE 1FZ5E 3RMAA 2P5OA 4AI6A 3SQ0A 3CFRA 3KD1E 4FJNA 2B7MA 3QEIA 2P1MB 2VJ4A 4M3TA 5IREA 1MTYG 4KHSA 3CFOA 1XL3C 4DTMA 3LDSA 4E3SA 5H37A 2K5SA 2FW3A 2E32A 3C6NB 4RG8A 4QNDA 3NHGA 1XVCE 3SUPA 2B8IA 3NGIA 4FJ5A 3C6OB 3J2PA 2OVQB 2RCUA 3SJJA 1IG9A 1FZ0E 1FZIE 3SVIA 2MW2A 3QESA 3N1BA 4FK2A 3SQ4A 2OZMA 3SQ1A 3RMCA 3LZJA 1Q9XA 4IT5A 4KI6A 4DTOA 4DTSA 4B08A 1XVGE 2OVPB 2DY4A 3SNNA 2RKHA 1XVDE 3SCXA 3OGKB 2P5GA 4DU1A 2OZSA 1FZ6E 3TAEA 4DU4A 2VIXA 3C6PB 1XU3E 2E31A 2OVRB 4DTXA 4HCCA 4FVMA 3TL8B 3SI6A 2FYOA 1MMOG 3HGKE 4EP9A 1LDKE 1N1CA 3E4YA 3CFPA 2VJ5A 1XMFE 3V7DB 1Q9YA 4KHYA 3QETA 4DTUA 3HP9A 4DTNA 3SUOA 1JW2A 2P1PB 4ADOA 1FZ3E 2JHPA 3SPZA 4FJJA 4M3WA 1FZHE 4M42A 1XVFE 3E4WA 3C94A 4KHWA 2P1QB 3HL8A 4FJ8A 3QNNA 5IZ7A 1FZ4E 4X5MA 3S9HA 4RNGA 3NAEA 3QEVA 3TAGA 3QEXA 2JH8A 3NCIA 5IBKB 4FJIA 1FXXA 1FZ7E 3J27A 1FZ2E 1XVBE 4AKGA 3RMBA 1FS1A 4JS4A 4HCBA 1FZ9E 4M3RA 1P22A 1WAJA 3L2OB 4X5NA 4FJ7A 4FK0A 4J2DA 3K2OA 3RWUA 1FYZE 2JQTA 4M45A 3LDBA 4I6JB 3N1EA 3LZIA 4I9QA 4J2BA 3TJYA 1FPOA 1IH7A 1XU5E 4FJXA 4M3XA 3HGLA 2LF3A 3NDKA 3NE6A 3QEWA 3SUQA 3QEPA 4E4BA 3L8BA 3C95A 2QXFA 1XVEE 4I9LA 3WSOA 4DTJA 4AKHA 2B1EA 4GAMC 3KD5E 4FJMA 3QERA 2HD0A 3SQ2A 4J2AA 3QNOA 4FJHA 1XMHE 4J2EA 4M3ZA 4FJKA 4ICGC 2PFVA 4JRPA 3SPYA 4KHUA 4DU3A 2MMBA 4M3UA 2H4TA 3UO3A 1FZ8E 3SUNA 4EPHA 3RMDA 2OYQA 3UO2A 4QNCA 3OGMB 2DTUA 2JH9A 2JHAA 4M41A 2P1OB 4FJGA 3TABA 3TAFA 4EYWA 4FJLA 4FJ9A 1NEXB 4KHNA 4KHQA 4AKIA 2DEBA 3CQ8A 3MKSB 4RL5A 4JRQA 2ATQA 1WAFA 4ADNA 4M3YA 3OGLB 4DTRA 2LF6A 4JS5A 3UIQA 3L1NA 2YB5A 3L0MA 3LD8A 2JPNA 2P1NB 4DTPA 1MHYG 4KI4A 3BVOA 1FZ1E
chains in the Genus database with same CATH topology
2JHCA 4FK4A 2PFTA 1MHZG 1CLQA 2MZWB 1XMGE 1FZ5E 3RMAA 2P5OA 4AI6A 3SQ0A 3CFRA 3KD1E 4FJNA 2B7MA 3QEIA 2P1MB 2VJ4A 4M3TA 5IREA 1MTYG 4KHSA 3CFOA 1XL3C 4DTMA 3LDSA 4E3SA 5H37A 2FW3A 2E32A 3C6NB 4RG8A 4QNDA 3NHGA 1XVCE 3SUPA 2B8IA 3NGIA 4FJ5A 3C6OB 3J2PA 2OVQB 2RCUA 3SJJA 1IG9A 1FZ0E 1FZIE 3SVIA 3QESA 3N1BA 4FK2A 3SQ4A 2OZMA 3SQ1A 3RMCA 3LZJA 1Q9XA 4KI6A 4DTOA 4DTSA 4B08A 1XVGE 2OVPB 2DY4A 3SNNA 1XVDE 3SCXA 3OGKB 2P5GA 4DU1A 2OZSA 1FZ6E 3TAEA 4DU4A 2VIXA 3C6PB 1XU3E 2E31A 2OVRB 4DTXA 4HCCA 4FVMA 3TL8B 3SI6A 2FYOA 1MMOG 3HGKE 4EP9A 1LDKE 3CFPA 3E4YA 2VJ5A 1XMFE 3V7DB 1Q9YA 4KHYA 3QETA 4DTUA 3HP9A 4DTNA 3SUOA 2P1PB 4ADOA 1FZ3E 2JHPA 3SPZA 4FJJA 4M3WA 1FZHE 4M42A 1XVFE 3E4WA 3C94A 4KHWA 2P1QB 3HL8A 4FJ8A 3QNNA 5IZ7A 1FZ4E 4X5MA 3S9HA 4RNGA 3NAEA 3QEVA 3TAGA 3QEXA 2JH8A 3NCIA 5IBKB 4FJIA 1FXXA 1FZ7E 3J27A 1FZ2E 1XVBE 4AKGA 3RMBA 1FS1A 4JS4A 4HCBA 1FZ9E 4M3RA 1P22A 1WAJA 3L2OB 4X5NA 4FJ7A 4FK0A 4J2DA 3K2OA 3RWUA 1FYZE 3LZIA 4M45A 3LDBA 4I6JB 3N1EA 4I9QA 4J2BA 3TJYA 1IH7A 4FJXA 1XU5E 4M3XA 3HGLA 2LF3A 3NDKA 3NE6A 3QEWA 3SUQA 3QEPA 4E4BA 3L8BA 3C95A 2QXFA 1XVEE 4I9LA 4DTJA 4AKHA 2B1EA 4GAMC 3KD5E 4FJMA 3QERA 2HD0A 3SQ2A 4J2AA 3QNOA 4FJHA 1XMHE 4J2EA 4M3ZA 4FJKA 3SPYA 2PFVA 4JRPA 4KHUA 4DU3A 2MMBA 4M3UA 2H4TA 1FZ8E 3SUNA 4EPHA 3RMDA 2OYQA 4QNCA 3OGMB 2DTUA 2JH9A 2JHAA 4M41A 2P1OB 4FJGA 3TABA 3TAFA 4EYWA 4FJLA 4FJ9A 1NEXB 4KHNA 4KHQA 4AKIA 2DEBA 3CQ8A 3MKSB 4RL5A 4JRQA 2ATQA 1WAFA 4ADNA 4M3YA 3OGLB 4DTRA 2LF6A 4JS5A 3UIQA 3L1NA 2YB5A 3L0MA 3LD8A 2JPNA 2P1NB 4DTPA 1MHYG 4KI4A 3WSOA 1FZ1E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RNG A;  4QND A;  4QNC A;  4X5N A;  4X5M A; 
#chains in the Genus database with same CATH topology
 2JHC A;  4FK4 A;  2PFT A;  1MHZ G;  1CLQ A;  2MZW B;  1XMG E;  1FZ5 E;  3RMA A;  2P5O A;  4AI6 A;  3SQ0 A;  3CFR A;  3KD1 E;  4FJN A;  2B7M A;  3QEI A;  2P1M B;  2VJ4 A;  4M3T A;  5IRE A;  1MTY G;  4KHS A;  3CFO A;  1XL3 C;  4DTM A;  3LDS A;  4E3S A;  5H37 A;  2K5S A;  2FW3 A;  2E32 A;  3C6N B;  4RG8 A;  4QND A;  3NHG A;  1XVC E;  3SUP A;  2B8I A;  3NGI A;  4FJ5 A;  3C6O B;  3J2P A;  2OVQ B;  2RCU A;  3SJJ A;  1IG9 A;  1FZ0 E;  1FZI E;  3SVI A;  2MW2 A;  3QES A;  3N1B A;  4FK2 A;  3SQ4 A;  2OZM A;  3SQ1 A;  3RMC A;  3LZJ A;  1Q9X A;  4IT5 A;  4KI6 A;  4DTO A;  4DTS A;  4B08 A;  1XVG E;  2OVP B;  2DY4 A;  3SNN A;  2RKH A;  1XVD E;  3SCX A;  3OGK B;  2P5G A;  4DU1 A;  2OZS A;  1FZ6 E;  3TAE A;  4DU4 A;  2VIX A;  3C6P B;  1XU3 E;  2E31 A;  2OVR B;  4DTX A;  4HCC A;  4FVM A;  3TL8 B;  3SI6 A;  2FYO A;  1MMO G;  3HGK E;  4EP9 A;  1LDK E;  1N1C A;  3E4Y A;  3CFP A;  2VJ5 A;  1XMF E;  3V7D B;  1Q9Y A;  4KHY A;  3QET A;  4DTU A;  3HP9 A;  4DTN A;  3SUO A;  1JW2 A;  2P1P B;  4ADO A;  1FZ3 E;  2JHP A;  3SPZ A;  4FJJ A;  4M3W A;  1FZH E;  4M42 A;  1XVF E;  3E4W A;  3C94 A;  4KHW A;  2P1Q B;  3HL8 A;  4FJ8 A;  3QNN A;  5IZ7 A;  1FZ4 E;  4X5M A;  3S9H A;  4RNG A;  3NAE A;  3QEV A;  3TAG A;  3QEX A;  2JH8 A;  3NCI A;  5IBK B;  4FJI A;  1FXX A;  1FZ7 E;  3J27 A;  1FZ2 E;  1XVB E;  4AKG A;  3RMB A;  1FS1 A;  4JS4 A;  4HCB A;  1FZ9 E;  4M3R A;  1P22 A;  1WAJ A;  3L2O B;  4X5N A;  4FJ7 A;  4FK0 A;  4J2D A;  3K2O A;  3RWU A;  1FYZ E;  2JQT A;  4M45 A;  3LDB A;  4I6J B;  3N1E A;  3LZI A;  4I9Q A;  4J2B A;  3TJY A;  1FPO A;  1IH7 A;  1XU5 E;  4FJX A;  4M3X A;  3HGL A;  2LF3 A;  3NDK A;  3NE6 A;  3QEW A;  3SUQ A;  3QEP A;  4E4B A;  3L8B A;  3C95 A;  2QXF A;  1XVE E;  4I9L A;  3WSO A;  4DTJ A;  4AKH A;  2B1E A;  4GAM C;  3KD5 E;  4FJM A;  3QER A;  2HD0 A;  3SQ2 A;  4J2A A;  3QNO A;  4FJH A;  1XMH E;  4J2E A;  4M3Z A;  4FJK A;  4ICG C;  2PFV A;  4JRP A;  3SPY A;  4KHU A;  4DU3 A;  2MMB A;  4M3U A;  2H4T A;  3UO3 A;  1FZ8 E;  3SUN A;  4EPH A;  3RMD A;  2OYQ A;  3UO2 A;  4QNC A;  3OGM B;  2DTU A;  2JH9 A;  2JHA A;  4M41 A;  2P1O B;  4FJG A;  3TAB A;  3TAF A;  4EYW A;  4FJL A;  4FJ9 A;  1NEX B;  4KHN A;  4KHQ A;  4AKI A;  2DEB A;  3CQ8 A;  3MKS B;  4RL5 A;  4JRQ A;  2ATQ A;  1WAF A;  4ADN A;  4M3Y A;  3OGL B;  4DTR A;  2LF6 A;  4JS5 A;  3UIQ A;  3L1N A;  2YB5 A;  3L0M A;  3LD8 A;  2JPN A;  2P1N B;  4DTP A;  1MHY G;  4KI4 A;  3BVO A;  1FZ1 E; 
#chains in the Genus database with same CATH homology
 2JHC A;  4FK4 A;  2PFT A;  1MHZ G;  1CLQ A;  2MZW B;  1XMG E;  1FZ5 E;  3RMA A;  2P5O A;  4AI6 A;  3SQ0 A;  3CFR A;  3KD1 E;  4FJN A;  2B7M A;  3QEI A;  2P1M B;  2VJ4 A;  4M3T A;  5IRE A;  1MTY G;  4KHS A;  3CFO A;  1XL3 C;  4DTM A;  3LDS A;  4E3S A;  5H37 A;  2FW3 A;  2E32 A;  3C6N B;  4RG8 A;  4QND A;  3NHG A;  1XVC E;  3SUP A;  2B8I A;  3NGI A;  4FJ5 A;  3C6O B;  3J2P A;  2OVQ B;  2RCU A;  3SJJ A;  1IG9 A;  1FZ0 E;  1FZI E;  3SVI A;  3QES A;  3N1B A;  4FK2 A;  3SQ4 A;  2OZM A;  3SQ1 A;  3RMC A;  3LZJ A;  1Q9X A;  4KI6 A;  4DTO A;  4DTS A;  4B08 A;  1XVG E;  2OVP B;  2DY4 A;  3SNN A;  1XVD E;  3SCX A;  3OGK B;  2P5G A;  4DU1 A;  2OZS A;  1FZ6 E;  3TAE A;  4DU4 A;  2VIX A;  3C6P B;  1XU3 E;  2E31 A;  2OVR B;  4DTX A;  4HCC A;  4FVM A;  3TL8 B;  3SI6 A;  2FYO A;  1MMO G;  3HGK E;  4EP9 A;  1LDK E;  3CFP A;  3E4Y A;  2VJ5 A;  1XMF E;  3V7D B;  1Q9Y A;  4KHY A;  3QET A;  4DTU A;  3HP9 A;  4DTN A;  3SUO A;  2P1P B;  4ADO A;  1FZ3 E;  2JHP A;  3SPZ A;  4FJJ A;  4M3W A;  1FZH E;  4M42 A;  1XVF E;  3E4W A;  3C94 A;  4KHW A;  2P1Q B;  3HL8 A;  4FJ8 A;  3QNN A;  5IZ7 A;  1FZ4 E;  4X5M A;  3S9H A;  4RNG A;  3NAE A;  3QEV A;  3TAG A;  3QEX A;  2JH8 A;  3NCI A;  5IBK B;  4FJI A;  1FXX A;  1FZ7 E;  3J27 A;  1FZ2 E;  1XVB E;  4AKG A;  3RMB A;  1FS1 A;  4JS4 A;  4HCB A;  1FZ9 E;  4M3R A;  1P22 A;  1WAJ A;  3L2O B;  4X5N A;  4FJ7 A;  4FK0 A;  4J2D A;  3K2O A;  3RWU A;  1FYZ E;  3LZI A;  4M45 A;  3LDB A;  4I6J B;  3N1E A;  4I9Q A;  4J2B A;  3TJY A;  1IH7 A;  4FJX A;  1XU5 E;  4M3X A;  3HGL A;  2LF3 A;  3NDK A;  3NE6 A;  3QEW A;  3SUQ A;  3QEP A;  4E4B A;  3L8B A;  3C95 A;  2QXF A;  1XVE E;  4I9L A;  4DTJ A;  4AKH A;  2B1E A;  4GAM C;  3KD5 E;  4FJM A;  3QER A;  2HD0 A;  3SQ2 A;  4J2A A;  3QNO A;  4FJH A;  1XMH E;  4J2E A;  4M3Z A;  4FJK A;  3SPY A;  2PFV A;  4JRP A;  4KHU A;  4DU3 A;  2MMB A;  4M3U A;  2H4T A;  1FZ8 E;  3SUN A;  4EPH A;  3RMD A;  2OYQ A;  4QNC A;  3OGM B;  2DTU A;  2JH9 A;  2JHA A;  4M41 A;  2P1O B;  4FJG A;  3TAB A;  3TAF A;  4EYW A;  4FJL A;  4FJ9 A;  1NEX B;  4KHN A;  4KHQ A;  4AKI A;  2DEB A;  3CQ8 A;  3MKS B;  4RL5 A;  4JRQ A;  2ATQ A;  1WAF A;  4ADN A;  4M3Y A;  3OGL B;  4DTR A;  2LF6 A;  4JS5 A;  3UIQ A;  3L1N A;  2YB5 A;  3L0M A;  3LD8 A;  2JPN A;  2P1N B;  4DTP A;  1MHY G;  4KI4 A;  3WSO A;  1FZ1 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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