4RNGA

Crystal structure of a bacterial homologue of sweet transporters
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
82
structure length
82
Chain Sequence
DLNNLIGIIAGAITTSALIPQALKIYKTKSARDVSLAMFIFMAIGITLWFFYGVLIKEIPVILANLISLILIFLIIFMKIRY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
source organism Thermodesulfovibrio yellowstonii
publication title Crystal structure of a bacterial homologue of SWEET transporters.
pubmed doi rcsb
molecule keywords MtN3/saliva family
total genus 34
structure length 82
sequence length 82
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2014-10-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04193 PQ-loop PQ loop repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.290 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 4rngA00
4QNDA 4QNCA 4X5MA 4X5NA 4RNGA
chains in the Genus database with same CATH superfamily
4J2EA 3RMCA 4FK2A 2RCUA 3E4YA 3NDKA 2P5GA 4EYWA 3L1NA 3QEVA 3C94A 4HCCA 3SPZA 3RWUA 3SUPA 3SNNA 2B8IA 3N1BA 1XVEE 2P1PB 3CFOA 4JS5A 2P1NB 3TAGA 3J27A 3KD5E 4FJXA 2P5OA 2FYOA 4JRQA 4DTNA 1XVGE 1XU3E 3SCXA 1XL3C 4KHNA 4X5MA 1FS1A 3NGIA 3E4WA 1XVFE 3SQ4A 2RKHA 2PFTA 1FPOA 4J2DA 3BVOA 3HP9A 3HGLA 4B08A 3SPYA 3OGMB 4FJJA 1LDKE 4QNDA 3QEIA 3KD1E 5H37A 4AKGA 3NHGA 3HGKE 4ICGC 3UO3A 4AKHA 2OVQB 2JHAA 4DTRA 1FZ5E 2JHPA 4DTPA 4FK4A 4FJGA 3QNNA 3RMAA 2JH9A 3CFRA 5IZ7A 1Q9YA 4KHUA 4M42A 3SI6A 4JS4A 2K5SA 3OGKB 3S9HA 4FJLA 2VJ5A 4KHYA 4RNGA 2VJ4A 4KI6A 3N1EA 4ADNA 2LF6A 4FVMA 1FZ8E 2YB5A 1XMHE 3TL8B 4FJ5A 3NCIA 2MW2A 2LF3A 1P22A 1XVBE 4FJNA 2DTUA 1XVCE 1WAFA 3TABA 1FZ1E 4DTUA 2OZSA 4EPHA 3HL8A 4E4BA 3QESA 4GAMC 3RMBA 1FZ3E 4FJKA 4RG8A 1MHYG 1FZ4E 2DY4A 1IH7A 3LDBA 2DEBA 2MMBA 4M45A 4DU1A 3SQ1A 3QNOA 1FZ7E 4AI6A 2OYQA 5IREA 3QETA 1JW2A 1XMGE 3SQ2A 1MMOG 2JH8A 4ADOA 4JRPA 4I9LA 3SUOA 3CFPA 3LZJA 1FXXA 5IBKB 1IG9A 3LDSA 4AKIA 2FW3A 4M41A 3SUNA 1FZ0E 1N1CA 1NEXB 4M3ZA 1XU5E 1XVDE 3J2PA 3WSOA 3C6PB 3CQ8A 4FJHA 3LZIA 3C6OB 3UIQA 3L2OB 3V7DB 1MTYG 3L8BA 3QEPA 4J2BA 4M3TA 4DTXA 3K2OA 4X5NA 4FJIA 2B7MA 3L0MA 4FJ7A 2MZWB 3C6NB 3LD8A 4M3XA 4FK0A 3NAEA 4I6JB 4KHQA 1FZIE 4M3RA 3MKSB 3RMDA 4KHSA 3SQ0A 3C95A 1FYZE 2OZMA 2JQTA 2P1MB 2PFVA 3QEWA 3SUQA 2ATQA 2P1QB 1WAJA 2OVPB 2OVRB 4DU4A 2JPNA 4M3YA 3QEXA 4M3WA 4RL5A 1Q9XA 4KI4A 2H4TA 3SVIA 4M3UA 4HCBA 4J2AA 1CLQA 3TAFA 1FZ9E 4IT5A 3TAEA 1MHZG 1XMFE 4FJMA 2E32A 3UO2A 4DTSA 3QERA 4I9QA 4DTJA 3TJYA 4E3SA 1FZ6E 2P1OB 4FJ8A 4EP9A 2B1EA 2QXFA 2VIXA 4QNCA 3OGLB 4DU3A 4DTMA 4DTOA 4FJ9A 3SJJA 3NE6A 2E31A 4KHWA 1FZ2E 1FZHE 2JHCA 2HD0A
chains in the Genus database with same CATH topology
4J2EA 3RMCA 4FK2A 2RCUA 3E4YA 3NDKA 2P5GA 4EYWA 3L1NA 3QEVA 3C94A 4HCCA 3SPZA 3RWUA 3SUPA 3SNNA 2B8IA 3N1BA 1XVEE 2P1PB 3CFOA 4JS5A 2P1NB 3TAGA 3J27A 3KD5E 4FJXA 2P5OA 2FYOA 4JRQA 4DTNA 1XVGE 1XU3E 3SCXA 1XL3C 4KHNA 4X5MA 1FS1A 3NGIA 3E4WA 1XVFE 3SQ4A 2PFTA 4J2DA 3HP9A 3HGLA 4B08A 3SPYA 3OGMB 4FJJA 1LDKE 4QNDA 3QEIA 3KD1E 5H37A 4AKGA 3NHGA 3HGKE 4AKHA 2OVQB 2JHAA 4DTRA 1FZ5E 2JHPA 4DTPA 4FK4A 4FJGA 3QNNA 3RMAA 2JH9A 3CFRA 5IZ7A 1Q9YA 4KHUA 4M42A 3SI6A 4JS4A 3OGKB 3S9HA 4FJLA 2VJ5A 4KHYA 4RNGA 2VJ4A 4KI6A 3N1EA 4ADNA 2LF6A 4FVMA 1FZ8E 2YB5A 1XMHE 3TL8B 4FJ5A 3NCIA 2LF3A 1P22A 1XVBE 4FJNA 2DTUA 1XVCE 1WAFA 3TABA 1FZ1E 4DTUA 2OZSA 4EPHA 3HL8A 4E4BA 3QESA 4GAMC 3RMBA 1FZ3E 4FJKA 4RG8A 1MHYG 1FZ4E 2DY4A 1IH7A 3LDBA 2DEBA 2MMBA 4M45A 4DU1A 3SQ1A 3QNOA 1FZ7E 4AI6A 2OYQA 5IREA 3QETA 1XMGE 3SQ2A 1MMOG 2JH8A 4ADOA 4JRPA 4I9LA 3SUOA 3CFPA 3LZJA 1FXXA 5IBKB 1IG9A 3LDSA 4AKIA 2FW3A 4M41A 3SUNA 1FZ0E 1NEXB 4M3ZA 1XU5E 1XVDE 3J2PA 3WSOA 3C6PB 3CQ8A 4FJHA 3LZIA 3C6OB 3UIQA 3L2OB 3V7DB 1MTYG 3L8BA 3QEPA 4J2BA 4M3TA 4DTXA 3K2OA 4X5NA 4FJIA 2B7MA 3L0MA 4FJ7A 2MZWB 3C6NB 3LD8A 4M3XA 4FK0A 3NAEA 4I6JB 4KHQA 1FZIE 4M3RA 3MKSB 3RMDA 4KHSA 3SQ0A 3C95A 1FYZE 2OZMA 2P1MB 2PFVA 3QEWA 3SUQA 2ATQA 2P1QB 1WAJA 2OVPB 2OVRB 4DU4A 2JPNA 4M3YA 3QEXA 4M3WA 4RL5A 1Q9XA 4KI4A 2H4TA 3SVIA 4M3UA 4HCBA 4J2AA 1CLQA 3TAFA 1FZ9E 3TAEA 4FJMA 1MHZG 1XMFE 2E32A 3QERA 4DTSA 4I9QA 4DTJA 3TJYA 4E3SA 1FZ6E 2P1OB 4FJ8A 4EP9A 2B1EA 2QXFA 2VIXA 4QNCA 3OGLB 4DU3A 4DTMA 4DTOA 4FJ9A 3SJJA 3NE6A 2E31A 4KHWA 1FZ2E 1FZHE 2JHCA 2HD0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QND A;  4QNC A;  4X5M A;  4X5N A;  4RNG A; 
#chains in the Genus database with same CATH topology
 4J2E A;  3RMC A;  4FK2 A;  2RCU A;  3E4Y A;  3NDK A;  2P5G A;  4EYW A;  3L1N A;  3QEV A;  3C94 A;  4HCC A;  3SPZ A;  3RWU A;  3SUP A;  3SNN A;  2B8I A;  3N1B A;  1XVE E;  2P1P B;  3CFO A;  4JS5 A;  2P1N B;  3TAG A;  3J27 A;  3KD5 E;  4FJX A;  2P5O A;  2FYO A;  4JRQ A;  4DTN A;  1XVG E;  1XU3 E;  3SCX A;  1XL3 C;  4KHN A;  4X5M A;  1FS1 A;  3NGI A;  3E4W A;  1XVF E;  3SQ4 A;  2RKH A;  2PFT A;  1FPO A;  4J2D A;  3BVO A;  3HP9 A;  3HGL A;  4B08 A;  3SPY A;  3OGM B;  4FJJ A;  1LDK E;  4QND A;  3QEI A;  3KD1 E;  5H37 A;  4AKG A;  3NHG A;  3HGK E;  4ICG C;  3UO3 A;  4AKH A;  2OVQ B;  2JHA A;  4DTR A;  1FZ5 E;  2JHP A;  4DTP A;  4FK4 A;  4FJG A;  3QNN A;  3RMA A;  2JH9 A;  3CFR A;  5IZ7 A;  1Q9Y A;  4KHU A;  4M42 A;  3SI6 A;  4JS4 A;  2K5S A;  3OGK B;  3S9H A;  4FJL A;  2VJ5 A;  4KHY A;  4RNG A;  2VJ4 A;  4KI6 A;  3N1E A;  4ADN A;  2LF6 A;  4FVM A;  1FZ8 E;  2YB5 A;  1XMH E;  3TL8 B;  4FJ5 A;  3NCI A;  2MW2 A;  2LF3 A;  1P22 A;  1XVB E;  4FJN A;  2DTU A;  1XVC E;  1WAF A;  3TAB A;  1FZ1 E;  4DTU A;  2OZS A;  4EPH A;  3HL8 A;  4E4B A;  3QES A;  4GAM C;  3RMB A;  1FZ3 E;  4FJK A;  4RG8 A;  1MHY G;  1FZ4 E;  2DY4 A;  1IH7 A;  3LDB A;  2DEB A;  2MMB A;  4M45 A;  4DU1 A;  3SQ1 A;  3QNO A;  1FZ7 E;  4AI6 A;  2OYQ A;  5IRE A;  3QET A;  1JW2 A;  1XMG E;  3SQ2 A;  1MMO G;  2JH8 A;  4ADO A;  4JRP A;  4I9L A;  3SUO A;  3CFP A;  3LZJ A;  1FXX A;  5IBK B;  1IG9 A;  3LDS A;  4AKI A;  2FW3 A;  4M41 A;  3SUN A;  1FZ0 E;  1N1C A;  1NEX B;  4M3Z A;  1XU5 E;  1XVD E;  3J2P A;  3WSO A;  3C6P B;  3CQ8 A;  4FJH A;  3LZI A;  3C6O B;  3UIQ A;  3L2O B;  3V7D B;  1MTY G;  3L8B A;  3QEP A;  4J2B A;  4M3T A;  4DTX A;  3K2O A;  4X5N A;  4FJI A;  2B7M A;  3L0M A;  4FJ7 A;  2MZW B;  3C6N B;  3LD8 A;  4M3X A;  4FK0 A;  3NAE A;  4I6J B;  4KHQ A;  1FZI E;  4M3R A;  3MKS B;  3RMD A;  4KHS A;  3SQ0 A;  3C95 A;  1FYZ E;  2OZM A;  2JQT A;  2P1M B;  2PFV A;  3QEW A;  3SUQ A;  2ATQ A;  2P1Q B;  1WAJ A;  2OVP B;  2OVR B;  4DU4 A;  2JPN A;  4M3Y A;  3QEX A;  4M3W A;  4RL5 A;  1Q9X A;  4KI4 A;  2H4T A;  3SVI A;  4M3U A;  4HCB A;  4J2A A;  1CLQ A;  3TAF A;  1FZ9 E;  4IT5 A;  3TAE A;  1MHZ G;  1XMF E;  4FJM A;  2E32 A;  3UO2 A;  4DTS A;  3QER A;  4I9Q A;  4DTJ A;  3TJY A;  4E3S A;  1FZ6 E;  2P1O B;  4FJ8 A;  4EP9 A;  2B1E A;  2QXF A;  2VIX A;  4QNC A;  3OGL B;  4DU3 A;  4DTM A;  4DTO A;  4FJ9 A;  3SJJ A;  3NE6 A;  2E31 A;  4KHW A;  1FZ2 E;  1FZH E;  2JHC A;  2HD0 A; 
#chains in the Genus database with same CATH homology
 4J2E A;  3RMC A;  4FK2 A;  2RCU A;  3E4Y A;  3NDK A;  2P5G A;  4EYW A;  3L1N A;  3QEV A;  3C94 A;  4HCC A;  3SPZ A;  3RWU A;  3SUP A;  3SNN A;  2B8I A;  3N1B A;  1XVE E;  2P1P B;  3CFO A;  4JS5 A;  2P1N B;  3TAG A;  3J27 A;  3KD5 E;  4FJX A;  2P5O A;  2FYO A;  4JRQ A;  4DTN A;  1XVG E;  1XU3 E;  3SCX A;  1XL3 C;  4KHN A;  4X5M A;  1FS1 A;  3NGI A;  3E4W A;  1XVF E;  3SQ4 A;  2PFT A;  4J2D A;  3HP9 A;  3HGL A;  4B08 A;  3SPY A;  3OGM B;  4FJJ A;  1LDK E;  4QND A;  3QEI A;  3KD1 E;  5H37 A;  4AKG A;  3NHG A;  3HGK E;  4AKH A;  2OVQ B;  2JHA A;  4DTR A;  1FZ5 E;  2JHP A;  4DTP A;  4FK4 A;  4FJG A;  3QNN A;  3RMA A;  2JH9 A;  3CFR A;  5IZ7 A;  1Q9Y A;  4KHU A;  4M42 A;  3SI6 A;  4JS4 A;  3OGK B;  3S9H A;  4FJL A;  2VJ5 A;  4KHY A;  4RNG A;  2VJ4 A;  4KI6 A;  3N1E A;  4ADN A;  2LF6 A;  4FVM A;  1FZ8 E;  2YB5 A;  1XMH E;  3TL8 B;  4FJ5 A;  3NCI A;  2LF3 A;  1P22 A;  1XVB E;  4FJN A;  2DTU A;  1XVC E;  1WAF A;  3TAB A;  1FZ1 E;  4DTU A;  2OZS A;  4EPH A;  3HL8 A;  4E4B A;  3QES A;  4GAM C;  3RMB A;  1FZ3 E;  4FJK A;  4RG8 A;  1MHY G;  1FZ4 E;  2DY4 A;  1IH7 A;  3LDB A;  2DEB A;  2MMB A;  4M45 A;  4DU1 A;  3SQ1 A;  3QNO A;  1FZ7 E;  4AI6 A;  2OYQ A;  5IRE A;  3QET A;  1XMG E;  3SQ2 A;  1MMO G;  2JH8 A;  4ADO A;  4JRP A;  4I9L A;  3SUO A;  3CFP A;  3LZJ A;  1FXX A;  5IBK B;  1IG9 A;  3LDS A;  4AKI A;  2FW3 A;  4M41 A;  3SUN A;  1FZ0 E;  1NEX B;  4M3Z A;  1XU5 E;  1XVD E;  3J2P A;  3WSO A;  3C6P B;  3CQ8 A;  4FJH A;  3LZI A;  3C6O B;  3UIQ A;  3L2O B;  3V7D B;  1MTY G;  3L8B A;  3QEP A;  4J2B A;  4M3T A;  4DTX A;  3K2O A;  4X5N A;  4FJI A;  2B7M A;  3L0M A;  4FJ7 A;  2MZW B;  3C6N B;  3LD8 A;  4M3X A;  4FK0 A;  3NAE A;  4I6J B;  4KHQ A;  1FZI E;  4M3R A;  3MKS B;  3RMD A;  4KHS A;  3SQ0 A;  3C95 A;  1FYZ E;  2OZM A;  2P1M B;  2PFV A;  3QEW A;  3SUQ A;  2ATQ A;  2P1Q B;  1WAJ A;  2OVP B;  2OVR B;  4DU4 A;  2JPN A;  4M3Y A;  3QEX A;  4M3W A;  4RL5 A;  1Q9X A;  4KI4 A;  2H4T A;  3SVI A;  4M3U A;  4HCB A;  4J2A A;  1CLQ A;  3TAF A;  1FZ9 E;  3TAE A;  4FJM A;  1MHZ G;  1XMF E;  2E32 A;  3QER A;  4DTS A;  4I9Q A;  4DTJ A;  3TJY A;  4E3S A;  1FZ6 E;  2P1O B;  4FJ8 A;  4EP9 A;  2B1E A;  2QXF A;  2VIX A;  4QNC A;  3OGL B;  4DU3 A;  4DTM A;  4DTO A;  4FJ9 A;  3SJJ A;  3NE6 A;  2E31 A;  4KHW A;  1FZ2 E;  1FZH E;  2JHC A;  2HD0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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