1XL3C

Complex structure of y.pestis virulence factors yopn and tyea
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
91
structure length
88
Chain Sequence
AYDLSEFMGDIVALVDRWAGIHDIEHLANAFSLPTPEIVRFYQDLRMFRLFPLGVFSDEEQRQNLLQMCQNAIDMAIESEEEELSELD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion
source organism Yersinia pestis
publication title Three-dimensional structure of a macromolecular assembly that regulates type III secretion in Yersinia pestis.
pubmed doi rcsb
molecule keywords Secretion control protein
total genus 28
structure length 88
sequence length 91
chains with identical sequence D
ec nomenclature
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF09059 TyeA TyeA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.80 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xl3C00
1XL3C
chains in the Genus database with same CATH superfamily
3RMCA 4E4BA 4KHWA 3TL8B 4FJKA 2RCUA 4ADNA 4B08A 2DEBA 2OYQA 3KD1E 4AKIA 3LD8A 3OGKB 3C6NB 4FJ5A 3NCIA 3L8BA 3TAEA 3C6OB 1FZ1E 2HD0A 3QETA 3QEVA 3SQ4A 4FJIA 2P5GA 3KD5E 2FYOA 2RKHA 3HP9A 1XL3C 2FW3A 2JHCA 4DTOA 4I6JB 3QEPA 1XMHE 1XU3E 3SUOA 3QNNA 3NE6A 3C6PB 3HGLA 3QNOA 2P1NB 4HCBA 5IBKB 2K5SA 4KHNA 4KHSA 1N1CA 1XMGE 3E4YA 3LZIA 4M3ZA 1CLQA 3CFPA 4FJLA 4KI4A 3SUQA 3HL8A 4AKGA 2JHPA 1XU5E 1P22A 3J2PA 5H37A 3UO2A 4DTXA 3QERA 1Q9YA 4DTJA 2OVRB 3RMAA 4M3WA 4IT5A 3CFRA 3QEXA 2P1MB 1LDKE 3LZJA 3SUNA 4M3TA 2VJ5A 3RMBA 3C95A 3L1NA 2OVQB 2DY4A 3CQ8A 4DU3A 3TAFA 2JHAA 4I9QA 1FZ7E 3BVOA 1FZ0E 2JPNA 4HCCA 4J2AA 2JH9A 4JRQA 3C94A 1XVCE 4M45A 3LDBA 3S9HA 4GAMC 1WAFA 3V7DB 3CFOA 2E31A 4X5NA 1XVGE 3N1EA 4FK2A 4FVMA 4DTPA 1FZ5E 1MHZG 3RWUA 4FJ7A 4FK0A 2ATQA 2VIXA 3OGLB 2LF6A 2JH8A 3QESA 3QEIA 3NGIA 3N1BA 4M3RA 1XVEE 4E3SA 1MTYG 4QNDA 4J2DA 4KHQA 4FJ8A 1IH7A 2MMBA 4FJMA 3L0MA 1FS1A 4I9LA 3RMDA 2OZMA 1XVBE 4JS4A 3J27A 2OZSA 3NDKA 1Q9XA 2H4TA 3QEWA 3HGKE 4DU4A 3WSOA 2B7MA 2LF3A 3TABA 3SVIA 4DTUA 3NHGA 4J2EA 5IZ7A 3SQ2A 1FZ8E 2B8IA 3SQ0A 3SPYA 4J2BA 1FYZE 4X5MA 1MHYG 4JRPA 1FZ3E 1FZ9E 4FK4A 3E4WA 4DTMA 2MW2A 1MMOG 3TAGA 4M3UA 2JQTA 4M3YA 2YB5A 4M41A 4ICGC 4EPHA 3UO3A 3SCXA 2PFTA 3K2OA 1FZ2E 2E32A 1FXXA 2B1EA 4DU1A 3SPZA 4AKHA 3SNNA 1FZ4E 3SUPA 4FJNA 3SI6A 2P1OB 3OGMB 4FJGA 4KHYA 1IG9A 3SQ1A 4RNGA 1XVFE 2MZWB 4M3XA 1FPOA 4EP9A 3SJJA 1NEXB 4FJ9A 1WAJA 3LDSA 3NAEA 4FJJA 2DTUA 3L2OB 4KHUA 4AI6A 2VJ4A 1XMFE 3MKSB 2P1QB 2P1PB 4DTRA 4FJHA 1JW2A 1FZHE 4QNCA 3UIQA 4DTSA 4M42A 4EYWA 4JS5A 4KI6A 2OVPB 4DTNA 4RG8A 2P5OA 4ADOA 4FJXA 3TJYA 4RL5A 1FZ6E 2PFVA 5IREA 1XVDE 1FZIE 2QXFA
chains in the Genus database with same CATH topology
3RMCA 4E4BA 4KHWA 3TL8B 4FJKA 2RCUA 4ADNA 4B08A 2DEBA 2OYQA 3KD1E 4AKIA 3LD8A 3OGKB 3C6NB 4FJ5A 3NCIA 3L8BA 3TAEA 3C6OB 1FZ1E 2HD0A 3QETA 3QEVA 3SQ4A 4FJIA 2P5GA 3KD5E 2FYOA 3HP9A 1XL3C 2FW3A 2JHCA 4DTOA 4I6JB 3QEPA 1XMHE 1XU3E 3SUOA 3QNNA 3NE6A 3C6PB 3HGLA 3QNOA 2P1NB 4HCBA 5IBKB 4KHSA 4KHNA 1CLQA 1XMGE 3E4YA 3LZIA 4M3ZA 3CFPA 4FJLA 4KI4A 3SUQA 3HL8A 4AKGA 2JHPA 1XU5E 1P22A 3J2PA 5H37A 4DTXA 3QERA 1Q9YA 4M3WA 4DTJA 2OVRB 3RMAA 3CFRA 3QEXA 2P1MB 1LDKE 3LZJA 3SUNA 4M3TA 2VJ5A 3RMBA 3C95A 3L1NA 2OVQB 2DY4A 3CQ8A 4DU3A 3TAFA 2JHAA 4I9QA 1FZ7E 1FZ0E 2JPNA 4HCCA 4J2AA 2JH9A 4JRQA 3C94A 1XVCE 4M45A 3LDBA 3S9HA 4GAMC 1WAFA 3V7DB 3CFOA 2E31A 4X5NA 1XVGE 3N1EA 4FK2A 4FVMA 4DTPA 1FZ5E 1MHZG 3RWUA 4FJ7A 4FK0A 2ATQA 2VIXA 3OGLB 2LF6A 2JH8A 3QESA 3QEIA 3NGIA 3N1BA 4M3RA 1XVEE 4E3SA 1MTYG 4QNDA 4J2DA 4KHQA 4FJ8A 1IH7A 2MMBA 4FJMA 3L0MA 1FS1A 4I9LA 3RMDA 2OZMA 1XVBE 4JS4A 3J27A 2OZSA 3NDKA 1Q9XA 2H4TA 3QEWA 3HGKE 4DU4A 3WSOA 2B7MA 2LF3A 3TABA 3SVIA 4DTUA 3NHGA 4J2EA 5IZ7A 3SQ2A 1FZ8E 2B8IA 3SQ0A 3SPYA 4J2BA 1FYZE 4X5MA 1MHYG 4JRPA 1FZ3E 1FZ9E 4FK4A 3E4WA 4DTMA 1MMOG 3TAGA 4M3UA 4M3YA 2YB5A 4M41A 4EPHA 3SCXA 2PFTA 3K2OA 1FZ2E 2E32A 1FXXA 2B1EA 4DU1A 3SPZA 4AKHA 3SNNA 1FZ4E 3SUPA 4FJNA 3SI6A 2P1OB 3OGMB 4FJGA 4KHYA 1IG9A 3SQ1A 4RNGA 1XVFE 2MZWB 4M3XA 4EP9A 3SJJA 1NEXB 4FJ9A 1WAJA 3LDSA 3NAEA 4FJJA 2DTUA 3L2OB 4KHUA 4AI6A 2VJ4A 1XMFE 3MKSB 2P1QB 2P1PB 4DTRA 4FJHA 1FZHE 4QNCA 3UIQA 4DTSA 4M42A 4EYWA 4JS5A 4KI6A 2OVPB 4DTNA 4RG8A 2P5OA 4ADOA 4FJXA 3TJYA 4RL5A 1FZ6E 2PFVA 5IREA 1XVDE 1FZIE 2QXFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XL3 C; 
#chains in the Genus database with same CATH topology
 3RMC A;  4E4B A;  4KHW A;  3TL8 B;  4FJK A;  2RCU A;  4ADN A;  4B08 A;  2DEB A;  2OYQ A;  3KD1 E;  4AKI A;  3LD8 A;  3OGK B;  3C6N B;  4FJ5 A;  3NCI A;  3L8B A;  3TAE A;  3C6O B;  1FZ1 E;  2HD0 A;  3QET A;  3QEV A;  3SQ4 A;  4FJI A;  2P5G A;  3KD5 E;  2FYO A;  2RKH A;  3HP9 A;  1XL3 C;  2FW3 A;  2JHC A;  4DTO A;  4I6J B;  3QEP A;  1XMH E;  1XU3 E;  3SUO A;  3QNN A;  3NE6 A;  3C6P B;  3HGL A;  3QNO A;  2P1N B;  4HCB A;  5IBK B;  2K5S A;  4KHN A;  4KHS A;  1N1C A;  1XMG E;  3E4Y A;  3LZI A;  4M3Z A;  1CLQ A;  3CFP A;  4FJL A;  4KI4 A;  3SUQ A;  3HL8 A;  4AKG A;  2JHP A;  1XU5 E;  1P22 A;  3J2P A;  5H37 A;  3UO2 A;  4DTX A;  3QER A;  1Q9Y A;  4DTJ A;  2OVR B;  3RMA A;  4M3W A;  4IT5 A;  3CFR A;  3QEX A;  2P1M B;  1LDK E;  3LZJ A;  3SUN A;  4M3T A;  2VJ5 A;  3RMB A;  3C95 A;  3L1N A;  2OVQ B;  2DY4 A;  3CQ8 A;  4DU3 A;  3TAF A;  2JHA A;  4I9Q A;  1FZ7 E;  3BVO A;  1FZ0 E;  2JPN A;  4HCC A;  4J2A A;  2JH9 A;  4JRQ A;  3C94 A;  1XVC E;  4M45 A;  3LDB A;  3S9H A;  4GAM C;  1WAF A;  3V7D B;  3CFO A;  2E31 A;  4X5N A;  1XVG E;  3N1E A;  4FK2 A;  4FVM A;  4DTP A;  1FZ5 E;  1MHZ G;  3RWU A;  4FJ7 A;  4FK0 A;  2ATQ A;  2VIX A;  3OGL B;  2LF6 A;  2JH8 A;  3QES A;  3QEI A;  3NGI A;  3N1B A;  4M3R A;  1XVE E;  4E3S A;  1MTY G;  4QND A;  4J2D A;  4KHQ A;  4FJ8 A;  1IH7 A;  2MMB A;  4FJM A;  3L0M A;  1FS1 A;  4I9L A;  3RMD A;  2OZM A;  1XVB E;  4JS4 A;  3J27 A;  2OZS A;  3NDK A;  1Q9X A;  2H4T A;  3QEW A;  3HGK E;  4DU4 A;  3WSO A;  2B7M A;  2LF3 A;  3TAB A;  3SVI A;  4DTU A;  3NHG A;  4J2E A;  5IZ7 A;  3SQ2 A;  1FZ8 E;  2B8I A;  3SQ0 A;  3SPY A;  4J2B A;  1FYZ E;  4X5M A;  1MHY G;  4JRP A;  1FZ3 E;  1FZ9 E;  4FK4 A;  3E4W A;  4DTM A;  2MW2 A;  1MMO G;  3TAG A;  4M3U A;  2JQT A;  4M3Y A;  2YB5 A;  4M41 A;  4ICG C;  4EPH A;  3UO3 A;  3SCX A;  2PFT A;  3K2O A;  1FZ2 E;  2E32 A;  1FXX A;  2B1E A;  4DU1 A;  3SPZ A;  4AKH A;  3SNN A;  1FZ4 E;  3SUP A;  4FJN A;  3SI6 A;  2P1O B;  3OGM B;  4FJG A;  4KHY A;  1IG9 A;  3SQ1 A;  4RNG A;  1XVF E;  2MZW B;  4M3X A;  1FPO A;  4EP9 A;  3SJJ A;  1NEX B;  4FJ9 A;  1WAJ A;  3LDS A;  3NAE A;  4FJJ A;  2DTU A;  3L2O B;  4KHU A;  4AI6 A;  2VJ4 A;  1XMF E;  3MKS B;  2P1Q B;  2P1P B;  4DTR A;  4FJH A;  1JW2 A;  1FZH E;  4QNC A;  3UIQ A;  4DTS A;  4M42 A;  4EYW A;  4JS5 A;  4KI6 A;  2OVP B;  4DTN A;  4RG8 A;  2P5O A;  4ADO A;  4FJX A;  3TJY A;  4RL5 A;  1FZ6 E;  2PFV A;  5IRE A;  1XVD E;  1FZI E;  2QXF A; 
#chains in the Genus database with same CATH homology
 3RMC A;  4E4B A;  4KHW A;  3TL8 B;  4FJK A;  2RCU A;  4ADN A;  4B08 A;  2DEB A;  2OYQ A;  3KD1 E;  4AKI A;  3LD8 A;  3OGK B;  3C6N B;  4FJ5 A;  3NCI A;  3L8B A;  3TAE A;  3C6O B;  1FZ1 E;  2HD0 A;  3QET A;  3QEV A;  3SQ4 A;  4FJI A;  2P5G A;  3KD5 E;  2FYO A;  3HP9 A;  1XL3 C;  2FW3 A;  2JHC A;  4DTO A;  4I6J B;  3QEP A;  1XMH E;  1XU3 E;  3SUO A;  3QNN A;  3NE6 A;  3C6P B;  3HGL A;  3QNO A;  2P1N B;  4HCB A;  5IBK B;  4KHS A;  4KHN A;  1CLQ A;  1XMG E;  3E4Y A;  3LZI A;  4M3Z A;  3CFP A;  4FJL A;  4KI4 A;  3SUQ A;  3HL8 A;  4AKG A;  2JHP A;  1XU5 E;  1P22 A;  3J2P A;  5H37 A;  4DTX A;  3QER A;  1Q9Y A;  4M3W A;  4DTJ A;  2OVR B;  3RMA A;  3CFR A;  3QEX A;  2P1M B;  1LDK E;  3LZJ A;  3SUN A;  4M3T A;  2VJ5 A;  3RMB A;  3C95 A;  3L1N A;  2OVQ B;  2DY4 A;  3CQ8 A;  4DU3 A;  3TAF A;  2JHA A;  4I9Q A;  1FZ7 E;  1FZ0 E;  2JPN A;  4HCC A;  4J2A A;  2JH9 A;  4JRQ A;  3C94 A;  1XVC E;  4M45 A;  3LDB A;  3S9H A;  4GAM C;  1WAF A;  3V7D B;  3CFO A;  2E31 A;  4X5N A;  1XVG E;  3N1E A;  4FK2 A;  4FVM A;  4DTP A;  1FZ5 E;  1MHZ G;  3RWU A;  4FJ7 A;  4FK0 A;  2ATQ A;  2VIX A;  3OGL B;  2LF6 A;  2JH8 A;  3QES A;  3QEI A;  3NGI A;  3N1B A;  4M3R A;  1XVE E;  4E3S A;  1MTY G;  4QND A;  4J2D A;  4KHQ A;  4FJ8 A;  1IH7 A;  2MMB A;  4FJM A;  3L0M A;  1FS1 A;  4I9L A;  3RMD A;  2OZM A;  1XVB E;  4JS4 A;  3J27 A;  2OZS A;  3NDK A;  1Q9X A;  2H4T A;  3QEW A;  3HGK E;  4DU4 A;  3WSO A;  2B7M A;  2LF3 A;  3TAB A;  3SVI A;  4DTU A;  3NHG A;  4J2E A;  5IZ7 A;  3SQ2 A;  1FZ8 E;  2B8I A;  3SQ0 A;  3SPY A;  4J2B A;  1FYZ E;  4X5M A;  1MHY G;  4JRP A;  1FZ3 E;  1FZ9 E;  4FK4 A;  3E4W A;  4DTM A;  1MMO G;  3TAG A;  4M3U A;  4M3Y A;  2YB5 A;  4M41 A;  4EPH A;  3SCX A;  2PFT A;  3K2O A;  1FZ2 E;  2E32 A;  1FXX A;  2B1E A;  4DU1 A;  3SPZ A;  4AKH A;  3SNN A;  1FZ4 E;  3SUP A;  4FJN A;  3SI6 A;  2P1O B;  3OGM B;  4FJG A;  4KHY A;  1IG9 A;  3SQ1 A;  4RNG A;  1XVF E;  2MZW B;  4M3X A;  4EP9 A;  3SJJ A;  1NEX B;  4FJ9 A;  1WAJ A;  3LDS A;  3NAE A;  4FJJ A;  2DTU A;  3L2O B;  4KHU A;  4AI6 A;  2VJ4 A;  1XMF E;  3MKS B;  2P1Q B;  2P1P B;  4DTR A;  4FJH A;  1FZH E;  4QNC A;  3UIQ A;  4DTS A;  4M42 A;  4EYW A;  4JS5 A;  4KI6 A;  2OVP B;  4DTN A;  4RG8 A;  2P5O A;  4ADO A;  4FJX A;  3TJY A;  4RL5 A;  1FZ6 E;  2PFV A;  5IRE A;  1XVD E;  1FZI E;  2QXF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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