2LF3A

Solution nmr structure of hoppmal_281_385 from pseudomonas syringae pv. maculicola str. es4326, midwest center for structural genomics target apc40104.5 and northeast structural genomics consortium target pst2a
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
105
structure length
105
Chain Sequence
SQRPVDRNPPRINLMPTGANRVAMRNRGNNEADAALQALAQNGINMEDLRAALEAYIVWLRPIPLDIANALEGVGITPRFDNPEEAKVDNPLMNLSSALKRRLDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Effector protein hopAB3
publication title Structural Analysis of HopPmaL Reveals the Presence of a Second Adaptor Domain Common to the HopAB Family of Pseudomonas syringae Type III Effectors.
pubmed doi rcsb
source organism Pseudomonas syringae pv. maculicola
total genus 25
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2011-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16847 AvrPtoB_bdg Avirulence AvrPtoB, BAK1-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.220 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 2lf3A00
3TL8B 2LF6A 2LF3A
chains in the Genus database with same CATH superfamily
2P5GA 4J2DA 4KHQA 2MW2A 3TL8B 4RNGA 2VIXA 1XU5E 3LD8A 4DTUA 3HP9A 4E4BA 2JHCA 3C6NB 2YB5A 4DTRA 3C94A 2PFTA 4J2EA 2DTUA 4M3UA 4AI6A 4FK4A 1FZ3E 1FZ4E 2MZWB 3HGLA 2DY4A 3CFPA 3TJYA 4JS4A 3QEPA 4M3XA 4KHSA 4KHUA 1MHZG 4J2AA 1Q9XA 4FJ7A 1FPOA 4DU4A 3SPZA 4EP9A 4QNDA 3QEVA 4JRQA 3SQ4A 2JH9A 3NCIA 1XMFE 1IG9A 2ATQA 5IBKB 4FK0A 3SQ0A 3RWUA 3OGLB 3NAEA 3QNNA 3OGKB 3E4WA 1MTYG 1XVEE 2JPNA 4RL5A 4M45A 1XVBE 3NE6A 3SQ1A 2LF3A 5IREA 4KI6A 4DTNA 1IH7A 4ADNA 4AKIA 4EPHA 4RG8A 3SUQA 4DU1A 3QEWA 2B8IA 3RMDA 4GAMC 4DTPA 3QEXA 4ADOA 1MMOG 2P1MB 3CFOA 3UIQA 4FJ5A 4M42A 3L0MA 4I6JB 4HCCA 3SI6A 3L2OB 2K5SA 4X5MA 4I9LA 5IZ7A 3RMBA 3TAGA 4FJXA 2DEBA 3L8BA 3N1EA 4DU3A 3QESA 3C6PB 3SJJA 2RCUA 4KHNA 2FYOA 1FZ5E 3MKSB 4DTSA 4DTXA 2RKHA 4FJIA 4EYWA 3SNNA 1CLQA 3S9HA 4DTMA 1LDKE 3KD1E 2OVPB 3NGIA 4X5NA 4DTOA 4FJNA 2E31A 1FS1A 3WSOA 3QEIA 1JW2A 3LZJA 2OYQA 2HD0A 3KD5E 2B1EA 3SPYA 4M3TA 4ICGC 2VJ4A 1WAFA 4IT5A 4FJ9A 1MHYG 2OZSA 4M3RA 2QXFA 3HGKE 1FXXA 3LZIA 4FJ8A 1P22A 2OVQB 3QETA 2VJ5A 3J2PA 4I9QA 1FZ1E 2E32A 3C6OB 4J2BA 4KHWA 2P1PB 2P1QB 1FZ7E 2PFVA 1FZ2E 1XVDE 4FJKA 1FZHE 3SQ2A 3SUNA 3C95A 2JHAA 3TAFA 3TAEA 3K2OA 2FW3A 3QNOA 1WAJA 2JHPA 5H37A 3CQ8A 1FZ0E 4FJMA 1FZ8E 1NEXB 2JQTA 3J27A 3NDKA 4FJLA 1XVFE 3QERA 3RMCA 4KI4A 4M3ZA 1XVGE 1FZ9E 3OGMB 4QNCA 1XMGE 2H4TA 1FZIE 3UO3A 3TABA 4M3YA 4FVMA 1XMHE 3L1NA 1XU3E 4M41A 1XL3C 4JRPA 3RMAA 3UO2A 3HL8A 4B08A 2B7MA 1N1CA 3BVOA 3V7DB 1Q9YA 2JH8A 4FJHA 4FK2A 3NHGA 3E4YA 3SVIA 1FZ6E 3CFRA 4AKHA 2MMBA 4AKGA 4FJGA 4JS5A 3SUPA 1XVCE 2P1OB 1FYZE 3LDSA 3SCXA 3N1BA 4HCBA 3LDBA 4FJJA 2OVRB 2P1NB 2P5OA 2OZMA 4KHYA 4E3SA 3SUOA 4DTJA 2LF6A 4M3WA
chains in the Genus database with same CATH topology
2P5GA 4J2DA 4KHQA 3TL8B 4RNGA 2VIXA 1XU5E 3LD8A 4DTUA 3HP9A 4E4BA 2JHCA 3C6NB 2YB5A 4DTRA 3C94A 2PFTA 4J2EA 2DTUA 4M3UA 4AI6A 4FK4A 1FZ3E 1FZ4E 2MZWB 3HGLA 2DY4A 3CFPA 3TJYA 4JS4A 3QEPA 4M3XA 4KHSA 4KHUA 1MHZG 4J2AA 1Q9XA 4FJ7A 4DU4A 3SPZA 4EP9A 4QNDA 3QEVA 4JRQA 3SQ4A 2JH9A 3NCIA 1XMFE 1IG9A 2ATQA 5IBKB 4FK0A 3SQ0A 3RWUA 3OGLB 3NAEA 3QNNA 3OGKB 3E4WA 1MTYG 1XVEE 2JPNA 4RL5A 4M45A 1XVBE 3NE6A 3SQ1A 2LF3A 5IREA 4KI6A 4DTNA 1IH7A 4ADNA 4AKIA 4EPHA 4RG8A 3SUQA 4DU1A 3QEWA 2B8IA 3RMDA 4GAMC 4DTPA 3QEXA 4ADOA 1MMOG 2P1MB 3CFOA 3UIQA 4FJ5A 4M42A 3L0MA 4I6JB 4HCCA 3SI6A 3L2OB 4X5MA 4I9LA 5IZ7A 3RMBA 3TAGA 4FJXA 2DEBA 3L8BA 3N1EA 4DU3A 3QESA 3C6PB 3SJJA 2RCUA 4KHNA 2FYOA 1FZ5E 3MKSB 4DTSA 4DTXA 4FJIA 4EYWA 3SNNA 1CLQA 3S9HA 4DTMA 1LDKE 3KD1E 2OVPB 3NGIA 4X5NA 4DTOA 4FJNA 2E31A 1FS1A 3WSOA 3QEIA 3LZJA 2OYQA 2HD0A 3KD5E 2B1EA 3SPYA 4M3TA 2VJ4A 1WAFA 4FJ9A 1MHYG 2OZSA 4M3RA 2QXFA 3HGKE 1FXXA 3LZIA 4FJ8A 1P22A 2OVQB 3QETA 2VJ5A 3J2PA 4I9QA 1FZ1E 2E32A 3C6OB 4J2BA 4KHWA 2P1PB 2P1QB 1FZ7E 2PFVA 1FZ2E 1XVDE 4FJKA 1FZHE 3SQ2A 3SUNA 3C95A 2JHAA 3TAFA 3TAEA 3K2OA 2FW3A 3QNOA 1WAJA 2JHPA 5H37A 3CQ8A 1FZ0E 4FJMA 1FZ8E 1NEXB 3J27A 3NDKA 4FJLA 1XVFE 3QERA 3RMCA 4KI4A 4M3ZA 1XVGE 1FZ9E 3OGMB 4QNCA 1XMGE 2H4TA 1FZIE 3TABA 4M3YA 4FVMA 1XMHE 3L1NA 1XU3E 4M41A 1XL3C 4JRPA 3RMAA 3HL8A 4B08A 2B7MA 3V7DB 1Q9YA 2JH8A 4FJHA 4FK2A 3NHGA 3E4YA 3SVIA 1FZ6E 3CFRA 4AKHA 2MMBA 4AKGA 4FJGA 4JS5A 3SUPA 1XVCE 2P1OB 1FYZE 3LDSA 3SCXA 3N1BA 4HCBA 3LDBA 4FJJA 2OVRB 2P1NB 2P5OA 2OZMA 4KHYA 4E3SA 3SUOA 4DTJA 2LF6A 4M3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TL8 B;  2LF6 A;  2LF3 A; 
#chains in the Genus database with same CATH topology
 2P5G A;  4J2D A;  4KHQ A;  2MW2 A;  3TL8 B;  4RNG A;  2VIX A;  1XU5 E;  3LD8 A;  4DTU A;  3HP9 A;  4E4B A;  2JHC A;  3C6N B;  2YB5 A;  4DTR A;  3C94 A;  2PFT A;  4J2E A;  2DTU A;  4M3U A;  4AI6 A;  4FK4 A;  1FZ3 E;  1FZ4 E;  2MZW B;  3HGL A;  2DY4 A;  3CFP A;  3TJY A;  4JS4 A;  3QEP A;  4M3X A;  4KHS A;  4KHU A;  1MHZ G;  4J2A A;  1Q9X A;  4FJ7 A;  1FPO A;  4DU4 A;  3SPZ A;  4EP9 A;  4QND A;  3QEV A;  4JRQ A;  3SQ4 A;  2JH9 A;  3NCI A;  1XMF E;  1IG9 A;  2ATQ A;  5IBK B;  4FK0 A;  3SQ0 A;  3RWU A;  3OGL B;  3NAE A;  3QNN A;  3OGK B;  3E4W A;  1MTY G;  1XVE E;  2JPN A;  4RL5 A;  4M45 A;  1XVB E;  3NE6 A;  3SQ1 A;  2LF3 A;  5IRE A;  4KI6 A;  4DTN A;  1IH7 A;  4ADN A;  4AKI A;  4EPH A;  4RG8 A;  3SUQ A;  4DU1 A;  3QEW A;  2B8I A;  3RMD A;  4GAM C;  4DTP A;  3QEX A;  4ADO A;  1MMO G;  2P1M B;  3CFO A;  3UIQ A;  4FJ5 A;  4M42 A;  3L0M A;  4I6J B;  4HCC A;  3SI6 A;  3L2O B;  2K5S A;  4X5M A;  4I9L A;  5IZ7 A;  3RMB A;  3TAG A;  4FJX A;  2DEB A;  3L8B A;  3N1E A;  4DU3 A;  3QES A;  3C6P B;  3SJJ A;  2RCU A;  4KHN A;  2FYO A;  1FZ5 E;  3MKS B;  4DTS A;  4DTX A;  2RKH A;  4FJI A;  4EYW A;  3SNN A;  1CLQ A;  3S9H A;  4DTM A;  1LDK E;  3KD1 E;  2OVP B;  3NGI A;  4X5N A;  4DTO A;  4FJN A;  2E31 A;  1FS1 A;  3WSO A;  3QEI A;  1JW2 A;  3LZJ A;  2OYQ A;  2HD0 A;  3KD5 E;  2B1E A;  3SPY A;  4M3T A;  4ICG C;  2VJ4 A;  1WAF A;  4IT5 A;  4FJ9 A;  1MHY G;  2OZS A;  4M3R A;  2QXF A;  3HGK E;  1FXX A;  3LZI A;  4FJ8 A;  1P22 A;  2OVQ B;  3QET A;  2VJ5 A;  3J2P A;  4I9Q A;  1FZ1 E;  2E32 A;  3C6O B;  4J2B A;  4KHW A;  2P1P B;  2P1Q B;  1FZ7 E;  2PFV A;  1FZ2 E;  1XVD E;  4FJK A;  1FZH E;  3SQ2 A;  3SUN A;  3C95 A;  2JHA A;  3TAF A;  3TAE A;  3K2O A;  2FW3 A;  3QNO A;  1WAJ A;  2JHP A;  5H37 A;  3CQ8 A;  1FZ0 E;  4FJM A;  1FZ8 E;  1NEX B;  2JQT A;  3J27 A;  3NDK A;  4FJL A;  1XVF E;  3QER A;  3RMC A;  4KI4 A;  4M3Z A;  1XVG E;  1FZ9 E;  3OGM B;  4QNC A;  1XMG E;  2H4T A;  1FZI E;  3UO3 A;  3TAB A;  4M3Y A;  4FVM A;  1XMH E;  3L1N A;  1XU3 E;  4M41 A;  1XL3 C;  4JRP A;  3RMA A;  3UO2 A;  3HL8 A;  4B08 A;  2B7M A;  1N1C A;  3BVO A;  3V7D B;  1Q9Y A;  2JH8 A;  4FJH A;  4FK2 A;  3NHG A;  3E4Y A;  3SVI A;  1FZ6 E;  3CFR A;  4AKH A;  2MMB A;  4AKG A;  4FJG A;  4JS5 A;  3SUP A;  1XVC E;  2P1O B;  1FYZ E;  3LDS A;  3SCX A;  3N1B A;  4HCB A;  3LDB A;  4FJJ A;  2OVR B;  2P1N B;  2P5O A;  2OZM A;  4KHY A;  4E3S A;  3SUO A;  4DTJ A;  2LF6 A;  4M3W A; 
#chains in the Genus database with same CATH homology
 2P5G A;  4J2D A;  4KHQ A;  3TL8 B;  4RNG A;  2VIX A;  1XU5 E;  3LD8 A;  4DTU A;  3HP9 A;  4E4B A;  2JHC A;  3C6N B;  2YB5 A;  4DTR A;  3C94 A;  2PFT A;  4J2E A;  2DTU A;  4M3U A;  4AI6 A;  4FK4 A;  1FZ3 E;  1FZ4 E;  2MZW B;  3HGL A;  2DY4 A;  3CFP A;  3TJY A;  4JS4 A;  3QEP A;  4M3X A;  4KHS A;  4KHU A;  1MHZ G;  4J2A A;  1Q9X A;  4FJ7 A;  4DU4 A;  3SPZ A;  4EP9 A;  4QND A;  3QEV A;  4JRQ A;  3SQ4 A;  2JH9 A;  3NCI A;  1XMF E;  1IG9 A;  2ATQ A;  5IBK B;  4FK0 A;  3SQ0 A;  3RWU A;  3OGL B;  3NAE A;  3QNN A;  3OGK B;  3E4W A;  1MTY G;  1XVE E;  2JPN A;  4RL5 A;  4M45 A;  1XVB E;  3NE6 A;  3SQ1 A;  2LF3 A;  5IRE A;  4KI6 A;  4DTN A;  1IH7 A;  4ADN A;  4AKI A;  4EPH A;  4RG8 A;  3SUQ A;  4DU1 A;  3QEW A;  2B8I A;  3RMD A;  4GAM C;  4DTP A;  3QEX A;  4ADO A;  1MMO G;  2P1M B;  3CFO A;  3UIQ A;  4FJ5 A;  4M42 A;  3L0M A;  4I6J B;  4HCC A;  3SI6 A;  3L2O B;  4X5M A;  4I9L A;  5IZ7 A;  3RMB A;  3TAG A;  4FJX A;  2DEB A;  3L8B A;  3N1E A;  4DU3 A;  3QES A;  3C6P B;  3SJJ A;  2RCU A;  4KHN A;  2FYO A;  1FZ5 E;  3MKS B;  4DTS A;  4DTX A;  4FJI A;  4EYW A;  3SNN A;  1CLQ A;  3S9H A;  4DTM A;  1LDK E;  3KD1 E;  2OVP B;  3NGI A;  4X5N A;  4DTO A;  4FJN A;  2E31 A;  1FS1 A;  3WSO A;  3QEI A;  3LZJ A;  2OYQ A;  2HD0 A;  3KD5 E;  2B1E A;  3SPY A;  4M3T A;  2VJ4 A;  1WAF A;  4FJ9 A;  1MHY G;  2OZS A;  4M3R A;  2QXF A;  3HGK E;  1FXX A;  3LZI A;  4FJ8 A;  1P22 A;  2OVQ B;  3QET A;  2VJ5 A;  3J2P A;  4I9Q A;  1FZ1 E;  2E32 A;  3C6O B;  4J2B A;  4KHW A;  2P1P B;  2P1Q B;  1FZ7 E;  2PFV A;  1FZ2 E;  1XVD E;  4FJK A;  1FZH E;  3SQ2 A;  3SUN A;  3C95 A;  2JHA A;  3TAF A;  3TAE A;  3K2O A;  2FW3 A;  3QNO A;  1WAJ A;  2JHP A;  5H37 A;  3CQ8 A;  1FZ0 E;  4FJM A;  1FZ8 E;  1NEX B;  3J27 A;  3NDK A;  4FJL A;  1XVF E;  3QER A;  3RMC A;  4KI4 A;  4M3Z A;  1XVG E;  1FZ9 E;  3OGM B;  4QNC A;  1XMG E;  2H4T A;  1FZI E;  3TAB A;  4M3Y A;  4FVM A;  1XMH E;  3L1N A;  1XU3 E;  4M41 A;  1XL3 C;  4JRP A;  3RMA A;  3HL8 A;  4B08 A;  2B7M A;  3V7D B;  1Q9Y A;  2JH8 A;  4FJH A;  4FK2 A;  3NHG A;  3E4Y A;  3SVI A;  1FZ6 E;  3CFR A;  4AKH A;  2MMB A;  4AKG A;  4FJG A;  4JS5 A;  3SUP A;  1XVC E;  2P1O B;  1FYZ E;  3LDS A;  3SCX A;  3N1B A;  4HCB A;  3LDB A;  4FJJ A;  2OVR B;  2P1N B;  2P5O A;  2OZM A;  4KHY A;  4E3S A;  3SUO A;  4DTJ A;  2LF6 A;  4M3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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