The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
105
|
structure length |
105
|
Chain Sequence |
SQRPVDRNPPRINLMPTGANRVAMRNRGNNEADAALQALAQNGINMEDLRAALEAYIVWLRPIPLDIANALEGVGITPRFDNPEEAKVDNPLMNLSSALKRRLDA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Analysis of HopPmaL Reveals the Presence of a Second Adaptor Domain Common to the HopAB Family of Pseudomonas syringae Type III Effectors.
pubmed doi rcsb |
| molecule keywords |
Effector protein hopAB3
|
| molecule tags |
Signaling protein
|
| source organism |
Pseudomonas syringae pv. maculicola
|
| total genus |
25
|
| structure length |
105
|
| sequence length |
105
|
| ec nomenclature | |
| pdb deposition date | 2011-06-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16847 | AvrPtoB_bdg | Avirulence AvrPtoB, BAK1-binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Monooxygenase | Monooxygenase |
#chains in the Genus database with same CATH superfamily 3TL8 B; 2LF3 A; 2LF6 A; #chains in the Genus database with same CATH topology 2JHA A; 1N1C A; 1XVC E; 4DTU A; 2RCU A; 3KD1 E; 4M3Y A; 3NDK A; 1XU3 E; 3LDS A; 4QNC A; 3NAE A; 3C6O B; 3TL8 B; 4FVM A; 2OYQ A; 4FJH A; 3TAE A; 4FJ9 A; 1NEX B; 4J2D A; 3SPZ A; 3RMA A; 3E4Y A; 3L1N A; 4E4B A; 4FJK A; 4E3S A; 1FZ9 E; 3QNO A; 4JRQ A; 4FJ5 A; 1XVD E; 4KHW A; 2JH8 A; 3QEI A; 3S9H A; 2MMB A; 1Q9Y A; 2P1O B; 1MHY G; 2FYO A; 1Q9X A; 3J2P A; 4I9Q A; 3NCI A; 3TAG A; 2H4T A; 1WAJ A; 4FJ7 A; 4KHN A; 3BVO A; 3QEP A; 3SVI A; 3NE6 A; 3C94 A; 4DTJ A; 2MZW B; 2OVQ B; 1WAF A; 4M41 A; 4M3R A; 3SNN A; 4FJL A; 4X5M A; 3SQ1 A; 4J2E A; 4KHU A; 4M42 A; 2DY4 A; 5IZ7 A; 3SQ4 A; 3OGL B; 2YB5 A; 4M3Z A; 3L0M A; 1FZ8 E; 4QND A; 2JPN A; 3N1B A; 3L2O B; 4EPH A; 3RMC A; 4DTX A; 3LDB A; 3C95 A; 4I6J B; 1FZ4 E; 2K5S A; 3MKS B; 1MHZ G; 3N1E A; 3HL8 A; 2MW2 A; 1LDK E; 2VIX A; 4DTO A; 4X5N A; 4FK4 A; 4ADN A; 2JHC A; 4ICG C; 3CQ8 A; 4HCC A; 4I9L A; 2B1E A; 4M3W A; 4RNG A; 3KD5 E; 3V7D B; 3NGI A; 1XMH E; 1FS1 A; 2QXF A; 1FZ2 E; 4B08 A; 4DTR A; 3QNN A; 3J27 A; 1FZ0 E; 2E32 A; 2FW3 A; 1XVE E; 3TJY A; 3QEX A; 1XVF E; 3SUP A; 3CFR A; 2P1N B; 3LD8 A; 4DU1 A; 4J2A A; 4KHS A; 4RG8 A; 3UIQ A; 3SPY A; 3SUN A; 3CFO A; 1XVG E; 3RWU A; 4ADO A; 2JH9 A; 3SUQ A; 3SI6 A; 1FZI E; 4FJX A; 2E31 A; 4M3U A; 4DTP A; 4FJI A; 3SCX A; 4JS4 A; 4DTS A; 3RMB A; 4M3T A; 4M45 A; 3QEW A; 4FJG A; 2OZM A; 4M3X A; 3TAB A; 4JRP A; 2P1M B; 4FK0 A; 1P22 A; 4DTM A; 2PFV A; 4FJJ A; 4AKI A; 2LF3 A; 4KI4 A; 1FPO A; 1MMO G; 1MTY G; 4DU4 A; 3C6P B; 2P1Q B; 3HP9 A; 2HD0 A; 2ATQ A; 3HGK E; 4GAM C; 1JW2 A; 4DU3 A; 1XMG E; 3C6N B; 4KHQ A; 2VJ4 A; 3LZI A; 1FZ6 E; 4IT5 A; 3L8B A; 3QEV A; 4KI6 A; 3UO3 A; 1FZ3 E; 5IRE A; 1FXX A; 3QER A; 1IH7 A; 3E4W A; 3OGK B; 3NHG A; 3SUO A; 3SJJ A; 4AI6 A; 2B7M A; 1FZ1 E; 3WSO A; 4FJN A; 1IG9 A; 2OVP B; 1XU5 E; 3OGM B; 1FZH E; 3UO2 A; 4JS5 A; 2VJ5 A; 5IBK B; 5H37 A; 1FZ7 E; 2P5O A; 1FZ5 E; 1XVB E; 2DEB A; 2JQT A; 3K2O A; 3SQ0 A; 4KHY A; 3QET A; 4J2B A; 4AKG A; 1FYZ E; 4RL5 A; 4EP9 A; 3SQ2 A; 2RKH A; 4AKH A; 2DTU A; 2PFT A; 4FJ8 A; 3TAF A; 1CLQ A; 1XL3 C; 2JHP A; 4EYW A; 4DTN A; 3RMD A; 4FJM A; 4HCB A; 2B8I A; 3LZJ A; 3CFP A; 4FK2 A; 2OVR B; 2OZS A; 1XMF E; 3HGL A; 3QES A; 2P5G A; 2LF6 A; 2P1P B; #chains in the Genus database with same CATH homology 2JHA A; 1XVC E; 4DTU A; 2RCU A; 3KD1 E; 4M3Y A; 3NDK A; 1XU3 E; 3LDS A; 4QNC A; 3NAE A; 3C6O B; 3TL8 B; 4FVM A; 2OYQ A; 4FJH A; 3TAE A; 4FJ9 A; 1NEX B; 4J2D A; 3SPZ A; 3RMA A; 3E4Y A; 3L1N A; 4E4B A; 4FJK A; 4E3S A; 1FZ9 E; 3QNO A; 4JRQ A; 4FJ5 A; 1XVD E; 4KHW A; 2JH8 A; 3QEI A; 3S9H A; 2MMB A; 1Q9Y A; 2P1O B; 1MHY G; 2FYO A; 1Q9X A; 3J2P A; 4I9Q A; 3NCI A; 3TAG A; 2H4T A; 1WAJ A; 4FJ7 A; 4KHN A; 3QEP A; 3SVI A; 3NE6 A; 3C94 A; 4DTJ A; 2MZW B; 2OVQ B; 1WAF A; 4M41 A; 4M3R A; 3SNN A; 4FJL A; 4X5M A; 3SQ1 A; 4J2E A; 4KHU A; 4M42 A; 2DY4 A; 5IZ7 A; 3SQ4 A; 3OGL B; 2YB5 A; 4M3Z A; 3L0M A; 1FZ8 E; 4QND A; 2JPN A; 3N1B A; 3L2O B; 4EPH A; 3RMC A; 4DTX A; 3LDB A; 3C95 A; 4I6J B; 1FZ4 E; 3MKS B; 1MHZ G; 3N1E A; 3HL8 A; 1LDK E; 2VIX A; 4DTO A; 4X5N A; 4FK4 A; 4ADN A; 2JHC A; 3CQ8 A; 4HCC A; 4I9L A; 2B1E A; 4M3W A; 4RNG A; 3KD5 E; 3V7D B; 3NGI A; 1XMH E; 1FS1 A; 2QXF A; 1FZ2 E; 4B08 A; 4DTR A; 3QNN A; 3J27 A; 1FZ0 E; 2E32 A; 2FW3 A; 1XVE E; 3TJY A; 3QEX A; 1XVF E; 3SUP A; 3CFR A; 2P1N B; 3LD8 A; 4DU1 A; 4J2A A; 4KHS A; 4RG8 A; 3UIQ A; 3SPY A; 3SUN A; 3CFO A; 1XVG E; 3RWU A; 4ADO A; 2JH9 A; 3SUQ A; 3SI6 A; 1FZI E; 4FJX A; 2E31 A; 4M3U A; 4DTP A; 4FJI A; 3SCX A; 4JS4 A; 4DTS A; 3RMB A; 4M3T A; 4M45 A; 3QEW A; 4FJG A; 2OZM A; 4M3X A; 3TAB A; 4JRP A; 2P1M B; 4FK0 A; 1P22 A; 4DTM A; 2PFV A; 4FJJ A; 4AKI A; 2LF3 A; 4KI4 A; 1MMO G; 1MTY G; 4DU4 A; 3C6P B; 2P1Q B; 3HP9 A; 2HD0 A; 2ATQ A; 3HGK E; 4GAM C; 4DU3 A; 1XMG E; 3C6N B; 4KHQ A; 2VJ4 A; 3LZI A; 1FZ6 E; 3L8B A; 3QEV A; 4KI6 A; 3QER A; 1FZ3 E; 5IRE A; 1FXX A; 1IH7 A; 3E4W A; 3OGK B; 3NHG A; 3SUO A; 3SJJ A; 4AI6 A; 2B7M A; 1FZ1 E; 3WSO A; 4FJN A; 1IG9 A; 2OVP B; 1XU5 E; 3OGM B; 1FZH E; 4JS5 A; 2VJ5 A; 5IBK B; 5H37 A; 1FZ7 E; 2P5O A; 1FZ5 E; 1XVB E; 2DEB A; 3K2O A; 3SQ0 A; 4KHY A; 3QET A; 4J2B A; 4AKG A; 1FYZ E; 4RL5 A; 4EP9 A; 3SQ2 A; 4AKH A; 2DTU A; 2PFT A; 4FJ8 A; 3TAF A; 1CLQ A; 1XL3 C; 2JHP A; 4EYW A; 4DTN A; 3RMD A; 4FJM A; 4HCB A; 2B8I A; 3LZJ A; 3CFP A; 4FK2 A; 2OVR B; 2OZS A; 1XMF E; 3HGL A; 3QES A; 2P5G A; 2LF6 A; 2P1P B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
