1FZ9 | Genus

Total Genus 60

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	167
structure length	167
Chain Sequence	KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQSP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
publication title	Xenon and halogenated alkanes track putative substrate binding cavities in the soluble methane monooxygenase hydroxylase. pubmed doi rcsb
molecule keywords	METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN
total genus	60
structure length	167
sequence length	167
chains with identical sequence	F
ec nomenclature	ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date	2000-10-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
E	PF02964	MeMO_Hyd_G	Methane monooxygenase, hydrolase gamma chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1280.10	Mainly Alpha	Up-down Bundle	Monooxygenase	Monooxygenase	1fz9E01
1.20.1280.30	Mainly Alpha	Up-down Bundle	Monooxygenase	Monooxygenase	1fz9E02

1MHZG 1MTYG 1FZ5E 1XVDE 1FZHE 1FZ1E 1FZIE 1FZ9E 4GAMC 1FZ3E 1XMHE 1FZ0E 1FZ7E 1FZ6E 1XVFE 1FZ8E 1FYZE 1MMOG 1FZ2E 1XVEE 1XU3E 1MHYG 1XVBE 1XVGE 1FZ4E 1XMGE 1XU5E 1XVCE 1XMFE
chains in the Genus database with same CATH superfamily

2P5GA 2JH8A 2QXFA 1MTYG 1Q9YA 2P1OB 1IH7A 3RMCA 4FK0A 5IZ7A 1FZHE 5H37A 4EYWA 4FJHA 4EPHA 4DTPA 2OVRB 1FZIE 2RKHA 4QNCA 1FZ9E 2P1QB 3RMBA 3L8BA 3RWUA 4RNGA 3OGKB 3TAGA 1XMHE 4KHQA 1FZ7E 4M45A 3C6NB 1FZ8E 1FYZE 4JS4A 1CLQA 2OVQB 4X5NA 1XVEE 4M3TA 3NGIA 2DY4A 1XVGE 2B1EA 4FJIA 4DU4A 4J2EA 4M3WA 1WAJA 1FPOA 3C94A 4DTXA 3SUNA 3WSOA 4FK4A 3OGMB 2JHCA 2H4TA 4FJ8A 4DTRA 4M3UA 3QEPA 3TL8B 2JPNA 2JHPA 2MZWB 2ATQA 3J27A 3CFPA 1MHZG 2JQTA 4B08A 3SNNA 4I9QA 3SQ4A 2LF3A 1Q9XA 3C95A 3QNOA 3SVIA 3CFRA 2P1MB 1NEXB 2OVPB 1P22A 2FW3A 4I6JB 2E31A 3UO2A 4DU1A 3NE6A 3LZIA 3LZJA 3V7DB 2OYQA 4AKHA 2B7MA 2P1PB 1FZ0E 2VJ5A 2K5SA 3LD8A 4RG8A 3OGLB 3SUPA 3SPYA 3C6PB 4FJLA 4FJMA 3TABA 3QEXA 3QEIA 3KD5E 1XU3E 3NDKA 4KHSA 3S9HA 4FJJA 4FJ7A 4M3ZA 3HGLA 3SQ1A 4FJGA 4J2BA 3SJJA 4DTUA 1XMFE 4JRQA 3NHGA 3N1BA 2DEBA 3BVOA 4DTSA 2YB5A 4DTOA 4AKGA 2MMBA 3RMDA 5IBKB 3N1EA 2MW2A 1FZ5E 3HP9A 4ICGC 3RMAA 2B8IA 2JH9A 1WAFA 1XVDE 4FVMA 4M3RA 3SCXA 3SQ2A 3KD1E 4HCBA 3SPZA 4AKIA 3K2OA 3L1NA 3TJYA 3MKSB 4M42A 4EP9A 2RCUA 2FYOA 1FXXA 3E4YA 2P1NB 1FZ6E 1XVFE 4QNDA 3QNNA 4KHNA 3CFOA 3E4WA 3NAEA 3TAFA 3TAEA 2VJ4A 1MHYG 3LDBA 1FZ4E 4JRPA 3CQ8A 4J2DA 1XU5E 2VIXA 3HGKE 4ADNA 2HD0A 3J2PA 3SUOA 3SI6A 4DTJA 4HCCA 4KHUA 4M41A 4RL5A 4ADOA 4E3SA 3QERA 4J2AA 4FJXA 2OZMA 2E32A 3QETA 4FJ9A 2OZSA 1LDKE 4AI6A 2JHAA 1FZ1E 3C6OB 3HL8A 4FJ5A 1XL3C 4GAMC 4FJNA 4KHWA 4DU3A 4DTMA 1FZ3E 4E4BA 3QEVA 3SQ0A 3UO3A 3L2OB 1IG9A 1MMOG 4M3YA 1FZ2E 2PFVA 4FK2A 3LDSA 5IREA 3SUQA 1XVBE 2P5OA 4FJKA 3QEWA 4M3XA 1XMGE 4JS5A 4KHYA 2LF6A 1JW2A 3NCIA 3QESA 4KI6A 2DTUA 1FS1A 1XVCE 3L0MA 2PFTA 4I9LA 4X5MA 4DTNA 3UIQA 1N1CA 4IT5A 4KI4A
chains in the Genus database with same CATH topology

2P5GA 2JH8A 2QXFA 1MTYG 1Q9YA 2P1OB 1IH7A 3RMCA 4FK0A 5IZ7A 1FZHE 5H37A 4EYWA 4FJHA 4EPHA 4DTPA 2OVRB 1FZIE 4QNCA 1FZ9E 2P1QB 3RMBA 3L8BA 3RWUA 4RNGA 3OGKB 3TAGA 1XMHE 4KHQA 1FZ7E 4M45A 3C6NB 1FZ8E 1FYZE 4JS4A 1CLQA 2OVQB 4X5NA 1XVEE 3NGIA 2DY4A 1XVGE 2B1EA 4FJIA 4DU4A 4J2EA 4M3WA 1WAJA 3C94A 4DTXA 3SUNA 3WSOA 4FK4A 3OGMB 2JHCA 2H4TA 4FJ8A 4DTRA 4M3UA 3QEPA 3TL8B 2JPNA 2JHPA 2MZWB 2ATQA 3J27A 3CFPA 1MHZG 4B08A 3SNNA 4I9QA 3SQ4A 2LF3A 1Q9XA 3C95A 3QNOA 3SVIA 3CFRA 2P1MB 1NEXB 2OVPB 1P22A 2FW3A 4I6JB 2E31A 4DU1A 3NE6A 3LZIA 3LZJA 3V7DB 2OYQA 4AKHA 2B7MA 1FZ0E 2P1PB 2VJ5A 3LD8A 4RG8A 4FJLA 3OGLB 3SUPA 3SPYA 3C6PB 4FJMA 3TABA 3QEXA 3QEIA 3KD5E 1XU3E 3NDKA 4KHSA 3S9HA 4FJJA 4FJ7A 4M3ZA 3HGLA 3SQ1A 4FJGA 4J2BA 3SJJA 4DTUA 1XMFE 4JRQA 3NHGA 3N1BA 2DEBA 4DTOA 4DTSA 2YB5A 4AKGA 2MMBA 3RMDA 5IBKB 3N1EA 1FZ5E 3HP9A 3RMAA 2B8IA 2JH9A 1WAFA 1XVDE 4FVMA 4M3RA 3SCXA 3SQ2A 3KD1E 4HCBA 3SPZA 4AKIA 3K2OA 3L1NA 3TJYA 3MKSB 4M42A 4EP9A 2RCUA 2FYOA 1FXXA 3E4YA 2P1NB 1FZ6E 1XVFE 4QNDA 3QNNA 4KHNA 3CFOA 3E4WA 3NAEA 3TAFA 3TAEA 2VJ4A 1MHYG 3LDBA 1FZ4E 4JRPA 3CQ8A 4J2DA 1XU5E 2VIXA 3HGKE 4ADNA 2HD0A 3J2PA 3SUOA 3SI6A 4DTJA 4HCCA 4KHUA 4M41A 4RL5A 4ADOA 4E3SA 3QERA 4J2AA 4FJXA 2OZMA 2E32A 3QETA 4FJ9A 2OZSA 1LDKE 4AI6A 2JHAA 1FZ1E 3C6OB 3HL8A 4FJ5A 1XL3C 4GAMC 4FJNA 4KHWA 4DU3A 4DTMA 1FZ3E 4E4BA 3QEVA 3SQ0A 3L2OB 1IG9A 1MMOG 4M3YA 1FZ2E 2PFVA 4FK2A 3LDSA 5IREA 3SUQA 1XVBE 2P5OA 4FJKA 3QEWA 4M3XA 1XMGE 4JS5A 4KHYA 2LF6A 3NCIA 3QESA 4KI6A 2DTUA 1FS1A 1XVCE 3L0MA 2PFTA 4I9LA 4X5MA 4DTNA 3UIQA 4KI4A 4M3TA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1MHZ G;  1MTY G;  1FZ5 E;  1XVD E;  1FZH E;  1FZ1 E;  1FZI E;  1FZ9 E;  4GAM C;  1FZ3 E;  1XMH E;  1FZ0 E;  1FZ7 E;  1FZ6 E;  1XVF E;  1FZ8 E;  1FYZ E;  1MMO G;  1FZ2 E;  1XVE E;  1XU3 E;  1MHY G;  1XVB E;  1XVG E;  1FZ4 E;  1XMG E;  1XU5 E;  1XVC E;  1XMF E; 
#chains in the Genus database with same CATH topology
 2P5G A;  2JH8 A;  2QXF A;  1MTY G;  1Q9Y A;  2P1O B;  1IH7 A;  3RMC A;  4FK0 A;  5IZ7 A;  1FZH E;  5H37 A;  4EYW A;  4FJH A;  4EPH A;  4DTP A;  2OVR B;  1FZI E;  2RKH A;  4QNC A;  1FZ9 E;  2P1Q B;  3RMB A;  3L8B A;  3RWU A;  4RNG A;  3OGK B;  3TAG A;  1XMH E;  4KHQ A;  1FZ7 E;  4M45 A;  3C6N B;  1FZ8 E;  1FYZ E;  4JS4 A;  1CLQ A;  2OVQ B;  4X5N A;  1XVE E;  4M3T A;  3NGI A;  2DY4 A;  1XVG E;  2B1E A;  4FJI A;  4DU4 A;  4J2E A;  4M3W A;  1WAJ A;  1FPO A;  3C94 A;  4DTX A;  3SUN A;  3WSO A;  4FK4 A;  3OGM B;  2JHC A;  2H4T A;  4FJ8 A;  4DTR A;  4M3U A;  3QEP A;  3TL8 B;  2JPN A;  2JHP A;  2MZW B;  2ATQ A;  3J27 A;  3CFP A;  1MHZ G;  2JQT A;  4B08 A;  3SNN A;  4I9Q A;  3SQ4 A;  2LF3 A;  1Q9X A;  3C95 A;  3QNO A;  3SVI A;  3CFR A;  2P1M B;  1NEX B;  2OVP B;  1P22 A;  2FW3 A;  4I6J B;  2E31 A;  3UO2 A;  4DU1 A;  3NE6 A;  3LZI A;  3LZJ A;  3V7D B;  2OYQ A;  4AKH A;  2B7M A;  2P1P B;  1FZ0 E;  2VJ5 A;  2K5S A;  3LD8 A;  4RG8 A;  3OGL B;  3SUP A;  3SPY A;  3C6P B;  4FJL A;  4FJM A;  3TAB A;  3QEX A;  3QEI A;  3KD5 E;  1XU3 E;  3NDK A;  4KHS A;  3S9H A;  4FJJ A;  4FJ7 A;  4M3Z A;  3HGL A;  3SQ1 A;  4FJG A;  4J2B A;  3SJJ A;  4DTU A;  1XMF E;  4JRQ A;  3NHG A;  3N1B A;  2DEB A;  3BVO A;  4DTS A;  2YB5 A;  4DTO A;  4AKG A;  2MMB A;  3RMD A;  5IBK B;  3N1E A;  2MW2 A;  1FZ5 E;  3HP9 A;  4ICG C;  3RMA A;  2B8I A;  2JH9 A;  1WAF A;  1XVD E;  4FVM A;  4M3R A;  3SCX A;  3SQ2 A;  3KD1 E;  4HCB A;  3SPZ A;  4AKI A;  3K2O A;  3L1N A;  3TJY A;  3MKS B;  4M42 A;  4EP9 A;  2RCU A;  2FYO A;  1FXX A;  3E4Y A;  2P1N B;  1FZ6 E;  1XVF E;  4QND A;  3QNN A;  4KHN A;  3CFO A;  3E4W A;  3NAE A;  3TAF A;  3TAE A;  2VJ4 A;  1MHY G;  3LDB A;  1FZ4 E;  4JRP A;  3CQ8 A;  4J2D A;  1XU5 E;  2VIX A;  3HGK E;  4ADN A;  2HD0 A;  3J2P A;  3SUO A;  3SI6 A;  4DTJ A;  4HCC A;  4KHU A;  4M41 A;  4RL5 A;  4ADO A;  4E3S A;  3QER A;  4J2A A;  4FJX A;  2OZM A;  2E32 A;  3QET A;  4FJ9 A;  2OZS A;  1LDK E;  4AI6 A;  2JHA A;  1FZ1 E;  3C6O B;  3HL8 A;  4FJ5 A;  1XL3 C;  4GAM C;  4FJN A;  4KHW A;  4DU3 A;  4DTM A;  1FZ3 E;  4E4B A;  3QEV A;  3SQ0 A;  3UO3 A;  3L2O B;  1IG9 A;  1MMO G;  4M3Y A;  1FZ2 E;  2PFV A;  4FK2 A;  3LDS A;  5IRE A;  3SUQ A;  1XVB E;  2P5O A;  4FJK A;  3QEW A;  4M3X A;  1XMG E;  4JS5 A;  4KHY A;  2LF6 A;  1JW2 A;  3NCI A;  3QES A;  4KI6 A;  2DTU A;  1FS1 A;  1XVC E;  3L0M A;  2PFT A;  4I9L A;  4X5M A;  4DTN A;  3UIQ A;  1N1C A;  4IT5 A;  4KI4 A; 
#chains in the Genus database with same CATH homology
 2P5G A;  2JH8 A;  2QXF A;  1MTY G;  1Q9Y A;  2P1O B;  1IH7 A;  3RMC A;  4FK0 A;  5IZ7 A;  1FZH E;  5H37 A;  4EYW A;  4FJH A;  4EPH A;  4DTP A;  2OVR B;  1FZI E;  4QNC A;  1FZ9 E;  2P1Q B;  3RMB A;  3L8B A;  3RWU A;  4RNG A;  3OGK B;  3TAG A;  1XMH E;  4KHQ A;  1FZ7 E;  4M45 A;  3C6N B;  1FZ8 E;  1FYZ E;  4JS4 A;  1CLQ A;  2OVQ B;  4X5N A;  1XVE E;  3NGI A;  2DY4 A;  1XVG E;  2B1E A;  4FJI A;  4DU4 A;  4J2E A;  4M3W A;  1WAJ A;  3C94 A;  4DTX A;  3SUN A;  3WSO A;  4FK4 A;  3OGM B;  2JHC A;  2H4T A;  4FJ8 A;  4DTR A;  4M3U A;  3QEP A;  3TL8 B;  2JPN A;  2JHP A;  2MZW B;  2ATQ A;  3J27 A;  3CFP A;  1MHZ G;  4B08 A;  3SNN A;  4I9Q A;  3SQ4 A;  2LF3 A;  1Q9X A;  3C95 A;  3QNO A;  3SVI A;  3CFR A;  2P1M B;  1NEX B;  2OVP B;  1P22 A;  2FW3 A;  4I6J B;  2E31 A;  4DU1 A;  3NE6 A;  3LZI A;  3LZJ A;  3V7D B;  2OYQ A;  4AKH A;  2B7M A;  1FZ0 E;  2P1P B;  2VJ5 A;  3LD8 A;  4RG8 A;  4FJL A;  3OGL B;  3SUP A;  3SPY A;  3C6P B;  4FJM A;  3TAB A;  3QEX A;  3QEI A;  3KD5 E;  1XU3 E;  3NDK A;  4KHS A;  3S9H A;  4FJJ A;  4FJ7 A;  4M3Z A;  3HGL A;  3SQ1 A;  4FJG A;  4J2B A;  3SJJ A;  4DTU A;  1XMF E;  4JRQ A;  3NHG A;  3N1B A;  2DEB A;  4DTO A;  4DTS A;  2YB5 A;  4AKG A;  2MMB A;  3RMD A;  5IBK B;  3N1E A;  1FZ5 E;  3HP9 A;  3RMA A;  2B8I A;  2JH9 A;  1WAF A;  1XVD E;  4FVM A;  4M3R A;  3SCX A;  3SQ2 A;  3KD1 E;  4HCB A;  3SPZ A;  4AKI A;  3K2O A;  3L1N A;  3TJY A;  3MKS B;  4M42 A;  4EP9 A;  2RCU A;  2FYO A;  1FXX A;  3E4Y A;  2P1N B;  1FZ6 E;  1XVF E;  4QND A;  3QNN A;  4KHN A;  3CFO A;  3E4W A;  3NAE A;  3TAF A;  3TAE A;  2VJ4 A;  1MHY G;  3LDB A;  1FZ4 E;  4JRP A;  3CQ8 A;  4J2D A;  1XU5 E;  2VIX A;  3HGK E;  4ADN A;  2HD0 A;  3J2P A;  3SUO A;  3SI6 A;  4DTJ A;  4HCC A;  4KHU A;  4M41 A;  4RL5 A;  4ADO A;  4E3S A;  3QER A;  4J2A A;  4FJX A;  2OZM A;  2E32 A;  3QET A;  4FJ9 A;  2OZS A;  1LDK E;  4AI6 A;  2JHA A;  1FZ1 E;  3C6O B;  3HL8 A;  4FJ5 A;  1XL3 C;  4GAM C;  4FJN A;  4KHW A;  4DU3 A;  4DTM A;  1FZ3 E;  4E4B A;  3QEV A;  3SQ0 A;  3L2O B;  1IG9 A;  1MMO G;  4M3Y A;  1FZ2 E;  2PFV A;  4FK2 A;  3LDS A;  5IRE A;  3SUQ A;  1XVB E;  2P5O A;  4FJK A;  3QEW A;  4M3X A;  1XMG E;  4JS5 A;  4KHY A;  2LF6 A;  3NCI A;  3QES A;  4KI6 A;  2DTU A;  1FS1 A;  1XVC E;  3L0M A;  2PFT A;  4I9L A;  4X5M A;  4DTN A;  3UIQ A;  4KI4 A;  4M3T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1FZ9E

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations