1XMGE

Crystal structure of apo methane monooxygenase hydroxylase from m. capsulatus (bath)
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Preparation and X-ray Structures of Metal-Free, Dicobalt and Dimanganese Forms of Soluble Methane Monooxygenase Hydroxylase from Methylococcus capsulatus (Bath)
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Methane monooxygenase component A alpha chain
total genus 62
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2004-10-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xmgE01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1xmgE02
1FYZE 1MMOG 1FZ3E 1XMGE 1MHZG 1FZ5E 1XVDE 1XU5E 1XVBE 1FZ0E 1FZHE 1FZ7E 1XU3E 1XVFE 1FZ8E 1XMHE 1FZ4E 1XVCE 1FZ9E 1FZ2E 4GAMC 1FZIE 1MHYG 1FZ1E 1FZ6E 1XVGE 1XMFE 1XVEE 1MTYG
chains in the Genus database with same CATH superfamily
4KHYA 4HCBA 3E4YA 3BVOA 3CFPA 3QEXA 4FK0A 1CLQA 1MMOG 3N1EA 4FJMA 3LDBA 1FXXA 3CFRA 3QERA 3HGKE 1FZ5E 1XU5E 4JS4A 4DTMA 3SQ2A 4FVMA 4ICGC 4RG8A 1FZ7E 3SQ1A 4M3TA 4M3ZA 3OGMB 3V7DB 4DTSA 3UIQA 2MMBA 2P1QB 2PFVA 1XVFE 2JH9A 4GAMC 4J2BA 3C94A 3SQ4A 3NGIA 4DU4A 2P5OA 4M3RA 2P5GA 1FZIE 2DTUA 4KI6A 1MHYG 4EP9A 4FJJA 3SUOA 1FZ6E 4M3YA 3QEWA 2HD0A 3TAEA 1XVGE 1Q9YA 3RMBA 2JH8A 1WAFA 1Q9XA 3KD5E 2ATQA 3C95A 4I9QA 1FYZE 4ADNA 4AKIA 4FJIA 4AKHA 2P1MB 4EYWA 3CQ8A 1FZ3E 1N1CA 2B1EA 3L8BA 1XMGE 2JHAA 4M3WA 3OGKB 4KI4A 2B7MA 4I6JB 3NE6A 4M45A 4E4BA 1IG9A 2JQTA 3SPYA 3RMDA 2OVRB 1IH7A 3L0MA 4DTPA 4X5NA 3QEIA 4FJKA 4RNGA 4JS5A 4I9LA 4FK4A 1XVCE 1FZ9E 4HCCA 3L2OB 3SNNA 3UO3A 3HP9A 4QNCA 4J2DA 1LDKE 5IBKB 4DTJA 2E32A 1XL3C 3SI6A 1FS1A 3KD1E 3SUNA 4FJ5A 1XVEE 3QNOA 4FJLA 3WSOA 3CFOA 4X5MA 3NHGA 4M42A 4DTNA 3C6OB 1JW2A 3E4WA 4AI6A 3UO2A 4QNDA 3LDSA 3TAFA 3NDKA 2E31A 3SCXA 3S9HA 4J2AA 2P1PB 1XU3E 3MKSB 4FJ8A 4JRQA 1P22A 4FJGA 2B8IA 3TAGA 3K2OA 3SUQA 4M41A 3SUPA 3RMAA 4FJ9A 4J2EA 3QETA 4FJHA 4B08A 4KHSA 1NEXB 1FZ4E 4M3UA 3LD8A 1FZ2E 4DTXA 2MW2A 4KHUA 4M3XA 3QNNA 3J27A 3SPZA 3N1BA 2K5SA 3TL8B 3QEVA 3SVIA 4ADOA 4FK2A 2OVQB 2LF6A 2DEBA 3QESA 4KHQA 2DY4A 1MTYG 3RWUA 2LF3A 2JHPA 2P1OB 2FYOA 4DU1A 4DTUA 2YB5A 5H37A 4AKGA 3HGLA 4FJXA 1MHZG 3L1NA 1XVDE 2JPNA 4EPHA 2JHCA 1XVBE 2RCUA 5IZ7A 3NAEA 3RMCA 1FZ0E 3J2PA 3TABA 3QEPA 1FZHE 4DU3A 3OGLB 3SQ0A 2OZMA 4KHNA 4IT5A 2FW3A 3LZIA 2OZSA 2VJ5A 3C6PB 2OYQA 1FPOA 3C6NB 4KHWA 2PFTA 4FJNA 1FZ8E 1XMHE 3HL8A 3SJJA 4DTRA 2QXFA 2H4TA 3TJYA 4E3SA 4FJ7A 1FZ1E 1WAJA 3NCIA 2VJ4A 2VIXA 3LZJA 2OVPB 4RL5A 2RKHA 2P1NB 1XMFE 4JRPA 4DTOA 5IREA 2MZWB
chains in the Genus database with same CATH topology
4KHYA 4HCBA 3E4YA 3CFPA 3QEXA 4FK0A 1CLQA 1MMOG 3N1EA 4FJMA 3LDBA 1FXXA 3CFRA 3QERA 3HGKE 1FZ5E 1XU5E 4JS4A 4DTMA 3SQ2A 4FVMA 4RG8A 1FZ7E 3SQ1A 4M3TA 4M3ZA 3OGMB 3V7DB 4DTSA 3UIQA 2MMBA 2P1QB 2PFVA 1XVFE 2JH9A 4GAMC 4J2BA 3C94A 3SQ4A 3NGIA 4DU4A 2P5OA 4M3RA 2P5GA 1FZIE 2DTUA 4KI6A 1MHYG 4EP9A 4FJJA 3SUOA 1FZ6E 4M3YA 3QEWA 2HD0A 3TAEA 1XVGE 1Q9YA 3RMBA 2JH8A 1WAFA 1Q9XA 3KD5E 2ATQA 3C95A 4I9QA 1FYZE 4ADNA 4AKIA 4FJIA 4AKHA 2P1MB 4EYWA 3CQ8A 1FZ3E 2B1EA 3L8BA 1XMGE 2JHAA 4M3WA 3OGKB 4KI4A 2B7MA 4I6JB 3NE6A 4M45A 4E4BA 1IG9A 3SPYA 3RMDA 2OVRB 1IH7A 3L0MA 4DTPA 4X5NA 3QEIA 4FJKA 4RNGA 4JS5A 4I9LA 4FK4A 1XVCE 1FZ9E 4HCCA 3L2OB 3SNNA 3HP9A 4QNCA 4J2DA 1LDKE 5IBKB 4DTJA 2E32A 1XL3C 3SI6A 1FS1A 3KD1E 3SUNA 4FJ5A 1XVEE 3QNOA 4FJLA 3WSOA 3CFOA 4X5MA 3NHGA 4M42A 4DTNA 3C6OB 3E4WA 4AI6A 4QNDA 3LDSA 3TAFA 3NDKA 2E31A 3SCXA 3S9HA 4J2AA 2P1PB 1XU3E 3MKSB 4FJ8A 4JRQA 1P22A 4FJGA 2B8IA 3TAGA 3K2OA 3SUQA 4M41A 3SUPA 3RMAA 4FJ9A 4J2EA 3QETA 4FJHA 4B08A 4KHSA 1NEXB 1FZ4E 4M3UA 3LD8A 1FZ2E 4DTXA 4KHUA 4M3XA 3QNNA 3J27A 3SPZA 3N1BA 3TL8B 3QEVA 3SVIA 4ADOA 4FK2A 2OVQB 2LF6A 2DEBA 3QESA 4KHQA 2DY4A 1MTYG 3RWUA 2LF3A 2JHPA 2P1OB 2FYOA 4DU1A 4DTUA 2YB5A 5H37A 4AKGA 3HGLA 4FJXA 1MHZG 3L1NA 1XVDE 2JPNA 4EPHA 2JHCA 1XVBE 2RCUA 5IZ7A 3NAEA 3RMCA 1FZ0E 3J2PA 3TABA 3QEPA 1FZHE 4DU3A 3OGLB 3SQ0A 2OZMA 4KHNA 2FW3A 3LZIA 2OZSA 2VJ5A 3C6PB 2OYQA 3C6NB 4KHWA 2PFTA 4FJNA 1FZ8E 1XMHE 3HL8A 3SJJA 4DTRA 2QXFA 2H4TA 3TJYA 4E3SA 4FJ7A 1FZ1E 1WAJA 3NCIA 2VJ4A 2VIXA 3LZJA 2OVPB 4RL5A 2P1NB 1XMFE 4JRPA 4DTOA 5IREA 2MZWB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FYZ E;  1MMO G;  1FZ3 E;  1XMG E;  1MHZ G;  1FZ5 E;  1XVD E;  1XU5 E;  1XVB E;  1FZ0 E;  1FZH E;  1FZ7 E;  1XU3 E;  1XVF E;  1FZ8 E;  1XMH E;  1FZ4 E;  1XVC E;  1FZ9 E;  1FZ2 E;  4GAM C;  1FZI E;  1MHY G;  1FZ1 E;  1FZ6 E;  1XVG E;  1XMF E;  1XVE E;  1MTY G; 
#chains in the Genus database with same CATH topology
 4KHY A;  4HCB A;  3E4Y A;  3BVO A;  3CFP A;  3QEX A;  4FK0 A;  1CLQ A;  1MMO G;  3N1E A;  4FJM A;  3LDB A;  1FXX A;  3CFR A;  3QER A;  3HGK E;  1FZ5 E;  1XU5 E;  4JS4 A;  4DTM A;  3SQ2 A;  4FVM A;  4ICG C;  4RG8 A;  1FZ7 E;  3SQ1 A;  4M3T A;  4M3Z A;  3OGM B;  3V7D B;  4DTS A;  3UIQ A;  2MMB A;  2P1Q B;  2PFV A;  1XVF E;  2JH9 A;  4GAM C;  4J2B A;  3C94 A;  3SQ4 A;  3NGI A;  4DU4 A;  2P5O A;  4M3R A;  2P5G A;  1FZI E;  2DTU A;  4KI6 A;  1MHY G;  4EP9 A;  4FJJ A;  3SUO A;  1FZ6 E;  4M3Y A;  3QEW A;  2HD0 A;  3TAE A;  1XVG E;  1Q9Y A;  3RMB A;  2JH8 A;  1WAF A;  1Q9X A;  3KD5 E;  2ATQ A;  3C95 A;  4I9Q A;  1FYZ E;  4ADN A;  4AKI A;  4FJI A;  4AKH A;  2P1M B;  4EYW A;  3CQ8 A;  1FZ3 E;  1N1C A;  2B1E A;  3L8B A;  1XMG E;  2JHA A;  4M3W A;  3OGK B;  4KI4 A;  2B7M A;  4I6J B;  3NE6 A;  4M45 A;  4E4B A;  1IG9 A;  2JQT A;  3SPY A;  3RMD A;  2OVR B;  1IH7 A;  3L0M A;  4DTP A;  4X5N A;  3QEI A;  4FJK A;  4RNG A;  4JS5 A;  4I9L A;  4FK4 A;  1XVC E;  1FZ9 E;  4HCC A;  3L2O B;  3SNN A;  3UO3 A;  3HP9 A;  4QNC A;  4J2D A;  1LDK E;  5IBK B;  4DTJ A;  2E32 A;  1XL3 C;  3SI6 A;  1FS1 A;  3KD1 E;  3SUN A;  4FJ5 A;  1XVE E;  3QNO A;  4FJL A;  3WSO A;  3CFO A;  4X5M A;  3NHG A;  4M42 A;  4DTN A;  3C6O B;  1JW2 A;  3E4W A;  4AI6 A;  3UO2 A;  4QND A;  3LDS A;  3TAF A;  3NDK A;  2E31 A;  3SCX A;  3S9H A;  4J2A A;  2P1P B;  1XU3 E;  3MKS B;  4FJ8 A;  4JRQ A;  1P22 A;  4FJG A;  2B8I A;  3TAG A;  3K2O A;  3SUQ A;  4M41 A;  3SUP A;  3RMA A;  4FJ9 A;  4J2E A;  3QET A;  4FJH A;  4B08 A;  4KHS A;  1NEX B;  1FZ4 E;  4M3U A;  3LD8 A;  1FZ2 E;  4DTX A;  2MW2 A;  4KHU A;  4M3X A;  3QNN A;  3J27 A;  3SPZ A;  3N1B A;  2K5S A;  3TL8 B;  3QEV A;  3SVI A;  4ADO A;  4FK2 A;  2OVQ B;  2LF6 A;  2DEB A;  3QES A;  4KHQ A;  2DY4 A;  1MTY G;  3RWU A;  2LF3 A;  2JHP A;  2P1O B;  2FYO A;  4DU1 A;  4DTU A;  2YB5 A;  5H37 A;  4AKG A;  3HGL A;  4FJX A;  1MHZ G;  3L1N A;  1XVD E;  2JPN A;  4EPH A;  2JHC A;  1XVB E;  2RCU A;  5IZ7 A;  3NAE A;  3RMC A;  1FZ0 E;  3J2P A;  3TAB A;  3QEP A;  1FZH E;  4DU3 A;  3OGL B;  3SQ0 A;  2OZM A;  4KHN A;  4IT5 A;  2FW3 A;  3LZI A;  2OZS A;  2VJ5 A;  3C6P B;  2OYQ A;  1FPO A;  3C6N B;  4KHW A;  2PFT A;  4FJN A;  1FZ8 E;  1XMH E;  3HL8 A;  3SJJ A;  4DTR A;  2QXF A;  2H4T A;  3TJY A;  4E3S A;  4FJ7 A;  1FZ1 E;  1WAJ A;  3NCI A;  2VJ4 A;  2VIX A;  3LZJ A;  2OVP B;  4RL5 A;  2RKH A;  2P1N B;  1XMF E;  4JRP A;  4DTO A;  5IRE A;  2MZW B; 
#chains in the Genus database with same CATH homology
 4KHY A;  4HCB A;  3E4Y A;  3CFP A;  3QEX A;  4FK0 A;  1CLQ A;  1MMO G;  3N1E A;  4FJM A;  3LDB A;  1FXX A;  3CFR A;  3QER A;  3HGK E;  1FZ5 E;  1XU5 E;  4JS4 A;  4DTM A;  3SQ2 A;  4FVM A;  4RG8 A;  1FZ7 E;  3SQ1 A;  4M3T A;  4M3Z A;  3OGM B;  3V7D B;  4DTS A;  3UIQ A;  2MMB A;  2P1Q B;  2PFV A;  1XVF E;  2JH9 A;  4GAM C;  4J2B A;  3C94 A;  3SQ4 A;  3NGI A;  4DU4 A;  2P5O A;  4M3R A;  2P5G A;  1FZI E;  2DTU A;  4KI6 A;  1MHY G;  4EP9 A;  4FJJ A;  3SUO A;  1FZ6 E;  4M3Y A;  3QEW A;  2HD0 A;  3TAE A;  1XVG E;  1Q9Y A;  3RMB A;  2JH8 A;  1WAF A;  1Q9X A;  3KD5 E;  2ATQ A;  3C95 A;  4I9Q A;  1FYZ E;  4ADN A;  4AKI A;  4FJI A;  4AKH A;  2P1M B;  4EYW A;  3CQ8 A;  1FZ3 E;  2B1E A;  3L8B A;  1XMG E;  2JHA A;  4M3W A;  3OGK B;  4KI4 A;  2B7M A;  4I6J B;  3NE6 A;  4M45 A;  4E4B A;  1IG9 A;  3SPY A;  3RMD A;  2OVR B;  1IH7 A;  3L0M A;  4DTP A;  4X5N A;  3QEI A;  4FJK A;  4RNG A;  4JS5 A;  4I9L A;  4FK4 A;  1XVC E;  1FZ9 E;  4HCC A;  3L2O B;  3SNN A;  3HP9 A;  4QNC A;  4J2D A;  1LDK E;  5IBK B;  4DTJ A;  2E32 A;  1XL3 C;  3SI6 A;  1FS1 A;  3KD1 E;  3SUN A;  4FJ5 A;  1XVE E;  3QNO A;  4FJL A;  3WSO A;  3CFO A;  4X5M A;  3NHG A;  4M42 A;  4DTN A;  3C6O B;  3E4W A;  4AI6 A;  4QND A;  3LDS A;  3TAF A;  3NDK A;  2E31 A;  3SCX A;  3S9H A;  4J2A A;  2P1P B;  1XU3 E;  3MKS B;  4FJ8 A;  4JRQ A;  1P22 A;  4FJG A;  2B8I A;  3TAG A;  3K2O A;  3SUQ A;  4M41 A;  3SUP A;  3RMA A;  4FJ9 A;  4J2E A;  3QET A;  4FJH A;  4B08 A;  4KHS A;  1NEX B;  1FZ4 E;  4M3U A;  3LD8 A;  1FZ2 E;  4DTX A;  4KHU A;  4M3X A;  3QNN A;  3J27 A;  3SPZ A;  3N1B A;  3TL8 B;  3QEV A;  3SVI A;  4ADO A;  4FK2 A;  2OVQ B;  2LF6 A;  2DEB A;  3QES A;  4KHQ A;  2DY4 A;  1MTY G;  3RWU A;  2LF3 A;  2JHP A;  2P1O B;  2FYO A;  4DU1 A;  4DTU A;  2YB5 A;  5H37 A;  4AKG A;  3HGL A;  4FJX A;  1MHZ G;  3L1N A;  1XVD E;  2JPN A;  4EPH A;  2JHC A;  1XVB E;  2RCU A;  5IZ7 A;  3NAE A;  3RMC A;  1FZ0 E;  3J2P A;  3TAB A;  3QEP A;  1FZH E;  4DU3 A;  3OGL B;  3SQ0 A;  2OZM A;  4KHN A;  2FW3 A;  3LZI A;  2OZS A;  2VJ5 A;  3C6P B;  2OYQ A;  3C6N B;  4KHW A;  2PFT A;  4FJN A;  1FZ8 E;  1XMH E;  3HL8 A;  3SJJ A;  4DTR A;  2QXF A;  2H4T A;  3TJY A;  4E3S A;  4FJ7 A;  1FZ1 E;  1WAJ A;  3NCI A;  2VJ4 A;  2VIX A;  3LZJ A;  2OVP B;  4RL5 A;  2P1N B;  1XMF E;  4JRP A;  4DTO A;  5IRE A;  2MZW B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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