The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
15
|
sequence length |
57
|
structure length |
57
|
Chain Sequence |
MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the nucleoid-associated protein Cnu reveals common binding sites for H-NS in Cnu and Hha.
pubmed doi rcsb |
| molecule keywords |
H-NS/stpA-binding protein 2
|
| molecule tags |
Protein binding
|
| source organism |
Escherichia coli
|
| total genus |
15
|
| structure length |
57
|
| sequence length |
57
|
| ec nomenclature | |
| pdb deposition date | 2007-06-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05321 | HHA | Haemolysin expression modulating protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Monooxygenase | HHA |
#chains in the Genus database with same CATH superfamily 4ICG C; 2JQT A; 2MW2 A; 2K5S A; 1JW2 A; #chains in the Genus database with same CATH topology 3LD8 A; 3V7D B; 4KHW A; 4J2A A; 5IZ7 A; 3NAE A; 1FZ8 E; 4M3X A; 4FJ9 A; 2P1M B; 4FJL A; 3QER A; 3QES A; 3HL8 A; 3QNN A; 1FYZ E; 1WAJ A; 1XVE E; 2JH8 A; 3OGL B; 4I9Q A; 4KHS A; 4M3Z A; 1MHY G; 4HCC A; 4M42 A; 2MMB A; 4FK0 A; 3WSO A; 3HGK E; 3UO2 A; 4FJM A; 1XVD E; 4DTO A; 4DTJ A; 1P22 A; 2FYO A; 2RCU A; 3RMD A; 2JHP A; 4B08 A; 3TAF A; 2OZS A; 4DTS A; 5IRE A; 2OVQ B; 2ATQ A; 2JHC A; 3L2O B; 3L0M A; 2P1P B; 2PFV A; 3CFP A; 3LZI A; 3KD1 E; 1FZI E; 1FZ1 E; 1Q9Y A; 1MMO G; 3QEP A; 4E3S A; 3TAG A; 3TAE A; 2DY4 A; 4KHY A; 2QXF A; 3NHG A; 3SVI A; 4DTP A; 3LDB A; 3C6O B; 2MZW B; 4JRP A; 4FJ5 A; 4HCB A; 3MKS B; 4E4B A; 4EPH A; 4FJJ A; 4KI6 A; 4QNC A; 3RMA A; 4FK4 A; 2VIX A; 4M45 A; 2OVP B; 1XVG E; 2B8I A; 4JRQ A; 3L8B A; 3CFR A; 3QEV A; 4M3U A; 3CQ8 A; 3QET A; 3SQ0 A; 2LF3 A; 2P1N B; 4QND A; 2DTU A; 3CFO A; 4DU4 A; 3SPZ A; 1N1C A; 2JPN A; 3J2P A; 2P1O B; 1XU5 E; 2K5S A; 3OGM B; 3QEX A; 1LDK E; 3RMB A; 3SUO A; 1XMF E; 4KI4 A; 3HP9 A; 4FJG A; 2P5O A; 4J2E A; 1WAF A; 4RNG A; 4X5N A; 3UO3 A; 3QNO A; 3TJY A; 3BVO A; 3SI6 A; 2YB5 A; 4RG8 A; 4M3T A; 1JW2 A; 3C6N B; 2B7M A; 3NGI A; 4M3R A; 1XMG E; 3SPY A; 3QEI A; 4AI6 A; 1XMH E; 1FXX A; 2H4T A; 4FJI A; 3C95 A; 2OZM A; 2RKH A; 3SCX A; 2OVR B; 4KHN A; 3KD5 E; 4FK2 A; 4EP9 A; 2P1Q B; 2JQT A; 3QEW A; 2P5G A; 1FPO A; 4DTN A; 4FJX A; 4X5M A; 2JH9 A; 2OYQ A; 4KHU A; 4DU1 A; 2LF6 A; 2E31 A; 5H37 A; 3L1N A; 1XVF E; 4FVM A; 4AKH A; 3E4Y A; 3SQ1 A; 4M3Y A; 3HGL A; 2FW3 A; 3SUP A; 4ADN A; 4IT5 A; 1FZ2 E; 1XU3 E; 3SQ4 A; 1IG9 A; 3SQ2 A; 1XL3 C; 1FZ5 E; 2E32 A; 4FJK A; 3J27 A; 1IH7 A; 3C94 A; 3NE6 A; 5IBK B; 4DTX A; 4FJ8 A; 3SNN A; 3SUN A; 4KHQ A; 4FJH A; 1FZ4 E; 4DTR A; 3RWU A; 4M3W A; 2MW2 A; 4JS5 A; 1FZ6 E; 4J2D A; 1Q9X A; 4FJN A; 3NDK A; 1FZ0 E; 1FS1 A; 1FZ3 E; 4EYW A; 3TAB A; 4J2B A; 1FZ9 E; 2DEB A; 4JS4 A; 1MTY G; 3SUQ A; 1XVB E; 4FJ7 A; 4ICG C; 4AKI A; 2B1E A; 3E4W A; 3K2O A; 3N1B A; 2VJ4 A; 3UIQ A; 1CLQ A; 4GAM C; 4DU3 A; 3RMC A; 2HD0 A; 2VJ5 A; 3C6P B; 3LZJ A; 3N1E A; 3S9H A; 4DTM A; 1FZH E; 3TL8 B; 4ADO A; 1FZ7 E; 4I6J B; 3SJJ A; 4AKG A; 2PFT A; 3NCI A; 3LDS A; 4M41 A; 1NEX B; 4I9L A; 1XVC E; 4RL5 A; 2JHA A; 4DTU A; 1MHZ G; 3OGK B; #chains in the Genus database with same CATH homology 4ICG C; 2JQT A; 2MW2 A; 2K5S A; 1JW2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
