2LF3A

Solution nmr structure of hoppmal_281_385 from pseudomonas syringae pv. maculicola str. es4326, midwest center for structural genomics target apc40104.5 and northeast structural genomics consortium target pst2a
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
105
structure length
105
Chain Sequence
SQRPVDRNPPRINLMPTGANRVAMRNRGNNEADAALQALAQNGINMEDLRAALEAYIVWLRPIPLDIANALEGVGITPRFDNPEEAKVDNPLMNLSSALKRRLDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
source organism Pseudomonas syringae pv. maculicola
publication title Structural Analysis of HopPmaL Reveals the Presence of a Second Adaptor Domain Common to the HopAB Family of Pseudomonas syringae Type III Effectors.
pubmed doi rcsb
molecule keywords Effector protein hopAB3
total genus 25
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2011-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16847 AvrPtoB_bdg Avirulence AvrPtoB, BAK1-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.220 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 2lf3A00
2LF3A 2LF6A 3TL8B
chains in the Genus database with same CATH superfamily
1WAFA 4JRQA 2QXFA 3LD8A 1Q9XA 3KD5E 4FJ5A 4KHNA 3UO2A 3QNNA 3LZJA 4FJ8A 3QETA 1XVGE 1FZ1E 2OVPB 4X5MA 4FJIA 1MTYG 4DU4A 1FZIE 2VIXA 3QNOA 3HGKE 2JHAA 3HP9A 1FZ4E 3SVIA 2JPNA 5IZ7A 2OVRB 3QESA 3SPZA 4FJXA 2OVQB 1XVCE 1JW2A 2DY4A 4FJHA 4GAMC 3CFPA 2JHCA 3NE6A 4DTSA 1FZ9E 4FK4A 3SPYA 2MMBA 2RKHA 3OGMB 3BVOA 2K5SA 3L8BA 1FZ8E 3TAFA 4FVMA 3J27A 4QNCA 5IREA 4E3SA 1FZ2E 4M3ZA 4FJGA 3C6OB 3NHGA 4JS5A 2JH8A 2OZSA 4HCCA 3RMAA 2JQTA 4DTRA 3V7DB 4KHSA 4KHUA 3E4YA 2RCUA 4RNGA 1XMFE 3OGLB 4DTJA 2DTUA 4M3RA 2VJ5A 1FZ6E 1NEXB 2E32A 3K2OA 3TL8B 4DTNA 3SUOA 1FZ3E 4DTUA 4KI6A 3N1EA 4AKHA 1XU3E 2VJ4A 2P5GA 4FJJA 4RG8A 3SNNA 2DEBA 4EP9A 4M41A 4DTMA 3TAGA 3L1NA 4I9QA 4FK0A 4FJ7A 4AI6A 5H37A 3UO3A 1FZ5E 3SCXA 3MKSB 4KHQA 2B8IA 3NCIA 3C94A 3NGIA 3L2OB 4QNDA 2P5OA 4J2EA 3SQ0A 4M3TA 1FS1A 4ADOA 4JRPA 3QERA 3C6NB 1IG9A 1XVBE 1XMGE 3HL8A 2P1NB 1Q9YA 3RMBA 3LZIA 3SQ4A 2JHPA 3CFOA 4M3XA 3NAEA 1FZHE 3CFRA 5IBKB 3C95A 1MMOG 4X5NA 3SI6A 2P1PB 1P22A 4FK2A 4IT5A 4J2BA 4DTPA 3LDBA 3TABA 4EYWA 4M42A 1XVDE 1XMHE 3KD1E 4B08A 2MW2A 4ADNA 4J2AA 2PFVA 2YB5A 3SJJA 3L0MA 1FZ7E 3RMCA 2FYOA 3SUPA 4KI4A 3NDKA 1XU5E 2P1OB 3C6PB 1LDKE 3HGLA 4DU3A 1WAJA 4KHWA 2HD0A 2P1QB 4AKIA 1FXXA 3QEIA 4EPHA 2LF3A 3QEVA 3TJYA 3QEXA 3SQ1A 4ICGC 2H4TA 4M3WA 4M3YA 3S9HA 2MZWB 4I9LA 3WSOA 4FJLA 2B7MA 3E4WA 3RMDA 3SUNA 4FJ9A 3CQ8A 4FJKA 4AKGA 2OZMA 1FZ0E 4RL5A 1IH7A 4DTOA 4M3UA 2P1MB 1FPOA 4DTXA 3LDSA 1MHZG 3UIQA 2JH9A 4M45A 2E31A 3SUQA 2ATQA 1N1CA 2PFTA 3QEPA 1MHYG 2B1EA 3OGKB 3TAEA 4FJMA 2FW3A 3RWUA 2OYQA 4I6JB 1CLQA 1XVFE 1FYZE 4JS4A 4J2DA 3N1BA 2LF6A 4DU1A 1XL3C 1XVEE 4HCBA 4E4BA 3QEWA 3J2PA 4FJNA 4KHYA 3SQ2A
chains in the Genus database with same CATH topology
1WAFA 4JRQA 2QXFA 3LD8A 1Q9XA 3KD5E 4FJ5A 4KHNA 4FJ8A 3QNNA 3LZJA 3QETA 1XVGE 1FZ1E 2OVPB 4X5MA 4FJIA 1MTYG 4DU4A 1FZIE 2VIXA 3QNOA 3HGKE 2JHAA 3HP9A 1FZ4E 3SVIA 2JPNA 5IZ7A 2OVRB 3QESA 3SPZA 4FJXA 2OVQB 1XVCE 2DY4A 4FJHA 4GAMC 3CFPA 2JHCA 3NE6A 4DTSA 1FZ9E 4FK4A 3SPYA 2MMBA 3OGMB 3L8BA 1FZ8E 3TAFA 4FVMA 3J27A 4QNCA 5IREA 4E3SA 1FZ2E 4M3ZA 4FJGA 3C6OB 3NHGA 4JS5A 2JH8A 2OZSA 4HCCA 3RMAA 4DTRA 3V7DB 4KHSA 4KHUA 3E4YA 2RCUA 4RNGA 1XMFE 3OGLB 4DTJA 2DTUA 4M3RA 2VJ5A 1FZ6E 1NEXB 2E32A 3K2OA 3TL8B 4DTNA 3SUOA 1FZ3E 4DTUA 4KI6A 3N1EA 4AKHA 1XU3E 2VJ4A 2P5GA 4FJJA 4RG8A 3SNNA 2DEBA 4EP9A 4M41A 4DTMA 3TAGA 3L1NA 4I9QA 4FK0A 4FJ7A 4AI6A 5H37A 1FZ5E 3SCXA 3MKSB 4KHQA 2B8IA 3NCIA 3C94A 3NGIA 3L2OB 4QNDA 2P5OA 4J2EA 3SQ0A 4M3TA 1FS1A 4ADOA 4JRPA 3QERA 3C6NB 1IG9A 1XVBE 1XMGE 3HL8A 2P1NB 1Q9YA 3RMBA 3LZIA 3SQ4A 2JHPA 3CFOA 4M3XA 3NAEA 1FZHE 3CFRA 5IBKB 3C95A 1MMOG 4X5NA 3SI6A 2P1PB 1P22A 4FK2A 4J2BA 4DTPA 3LDBA 3TABA 4EYWA 4M42A 1XVDE 1XMHE 3KD1E 4B08A 4ADNA 4J2AA 2PFVA 2YB5A 3SJJA 3L0MA 1FZ7E 3RMCA 2FYOA 3SUPA 4KI4A 3NDKA 1XU5E 2P1OB 3C6PB 1LDKE 3HGLA 4DU3A 1WAJA 4KHWA 2HD0A 2P1QB 4AKIA 1FXXA 3QEIA 4EPHA 2LF3A 3QEVA 3TJYA 3QEXA 3SQ1A 2H4TA 4M3WA 4M3YA 3S9HA 2MZWB 4I9LA 3WSOA 4FJLA 2B7MA 3E4WA 3RMDA 3SUNA 4FJ9A 3CQ8A 4FJKA 4AKGA 2OZMA 1FZ0E 4RL5A 1IH7A 4DTOA 4M3UA 2P1MB 4DTXA 3LDSA 1MHZG 3UIQA 2JH9A 4M45A 2E31A 3SUQA 2ATQA 2PFTA 3QEPA 1MHYG 2B1EA 3OGKB 3TAEA 4FJMA 2FW3A 3RWUA 2OYQA 4I6JB 1CLQA 1XVFE 1FYZE 4JS4A 4J2DA 3N1BA 2LF6A 4DU1A 1XL3C 1XVEE 4HCBA 4E4BA 3QEWA 3J2PA 4FJNA 4KHYA 3SQ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LF3 A;  2LF6 A;  3TL8 B; 
#chains in the Genus database with same CATH topology
 1WAF A;  4JRQ A;  2QXF A;  3LD8 A;  1Q9X A;  3KD5 E;  4FJ5 A;  4KHN A;  3UO2 A;  3QNN A;  3LZJ A;  4FJ8 A;  3QET A;  1XVG E;  1FZ1 E;  2OVP B;  4X5M A;  4FJI A;  1MTY G;  4DU4 A;  1FZI E;  2VIX A;  3QNO A;  3HGK E;  2JHA A;  3HP9 A;  1FZ4 E;  3SVI A;  2JPN A;  5IZ7 A;  2OVR B;  3QES A;  3SPZ A;  4FJX A;  2OVQ B;  1XVC E;  1JW2 A;  2DY4 A;  4FJH A;  4GAM C;  3CFP A;  2JHC A;  3NE6 A;  4DTS A;  1FZ9 E;  4FK4 A;  3SPY A;  2MMB A;  2RKH A;  3OGM B;  3BVO A;  2K5S A;  3L8B A;  1FZ8 E;  3TAF A;  4FVM A;  3J27 A;  4QNC A;  5IRE A;  4E3S A;  1FZ2 E;  4M3Z A;  4FJG A;  3C6O B;  3NHG A;  4JS5 A;  2JH8 A;  2OZS A;  4HCC A;  3RMA A;  2JQT A;  4DTR A;  3V7D B;  4KHS A;  4KHU A;  3E4Y A;  2RCU A;  4RNG A;  1XMF E;  3OGL B;  4DTJ A;  2DTU A;  4M3R A;  2VJ5 A;  1FZ6 E;  1NEX B;  2E32 A;  3K2O A;  3TL8 B;  4DTN A;  3SUO A;  1FZ3 E;  4DTU A;  4KI6 A;  3N1E A;  4AKH A;  1XU3 E;  2VJ4 A;  2P5G A;  4FJJ A;  4RG8 A;  3SNN A;  2DEB A;  4EP9 A;  4M41 A;  4DTM A;  3TAG A;  3L1N A;  4I9Q A;  4FK0 A;  4FJ7 A;  4AI6 A;  5H37 A;  3UO3 A;  1FZ5 E;  3SCX A;  3MKS B;  4KHQ A;  2B8I A;  3NCI A;  3C94 A;  3NGI A;  3L2O B;  4QND A;  2P5O A;  4J2E A;  3SQ0 A;  4M3T A;  1FS1 A;  4ADO A;  4JRP A;  3QER A;  3C6N B;  1IG9 A;  1XVB E;  1XMG E;  3HL8 A;  2P1N B;  1Q9Y A;  3RMB A;  3LZI A;  3SQ4 A;  2JHP A;  3CFO A;  4M3X A;  3NAE A;  1FZH E;  3CFR A;  5IBK B;  3C95 A;  1MMO G;  4X5N A;  3SI6 A;  2P1P B;  1P22 A;  4FK2 A;  4IT5 A;  4J2B A;  4DTP A;  3LDB A;  3TAB A;  4EYW A;  4M42 A;  1XVD E;  1XMH E;  3KD1 E;  4B08 A;  2MW2 A;  4ADN A;  4J2A A;  2PFV A;  2YB5 A;  3SJJ A;  3L0M A;  1FZ7 E;  3RMC A;  2FYO A;  3SUP A;  4KI4 A;  3NDK A;  1XU5 E;  2P1O B;  3C6P B;  1LDK E;  3HGL A;  4DU3 A;  1WAJ A;  4KHW A;  2HD0 A;  2P1Q B;  4AKI A;  1FXX A;  3QEI A;  4EPH A;  2LF3 A;  3QEV A;  3TJY A;  3QEX A;  3SQ1 A;  4ICG C;  2H4T A;  4M3W A;  4M3Y A;  3S9H A;  2MZW B;  4I9L A;  3WSO A;  4FJL A;  2B7M A;  3E4W A;  3RMD A;  3SUN A;  4FJ9 A;  3CQ8 A;  4FJK A;  4AKG A;  2OZM A;  1FZ0 E;  4RL5 A;  1IH7 A;  4DTO A;  4M3U A;  2P1M B;  1FPO A;  4DTX A;  3LDS A;  1MHZ G;  3UIQ A;  2JH9 A;  4M45 A;  2E31 A;  3SUQ A;  2ATQ A;  1N1C A;  2PFT A;  3QEP A;  1MHY G;  2B1E A;  3OGK B;  3TAE A;  4FJM A;  2FW3 A;  3RWU A;  2OYQ A;  4I6J B;  1CLQ A;  1XVF E;  1FYZ E;  4JS4 A;  4J2D A;  3N1B A;  2LF6 A;  4DU1 A;  1XL3 C;  1XVE E;  4HCB A;  4E4B A;  3QEW A;  3J2P A;  4FJN A;  4KHY A;  3SQ2 A; 
#chains in the Genus database with same CATH homology
 1WAF A;  4JRQ A;  2QXF A;  3LD8 A;  1Q9X A;  3KD5 E;  4FJ5 A;  4KHN A;  4FJ8 A;  3QNN A;  3LZJ A;  3QET A;  1XVG E;  1FZ1 E;  2OVP B;  4X5M A;  4FJI A;  1MTY G;  4DU4 A;  1FZI E;  2VIX A;  3QNO A;  3HGK E;  2JHA A;  3HP9 A;  1FZ4 E;  3SVI A;  2JPN A;  5IZ7 A;  2OVR B;  3QES A;  3SPZ A;  4FJX A;  2OVQ B;  1XVC E;  2DY4 A;  4FJH A;  4GAM C;  3CFP A;  2JHC A;  3NE6 A;  4DTS A;  1FZ9 E;  4FK4 A;  3SPY A;  2MMB A;  3OGM B;  3L8B A;  1FZ8 E;  3TAF A;  4FVM A;  3J27 A;  4QNC A;  5IRE A;  4E3S A;  1FZ2 E;  4M3Z A;  4FJG A;  3C6O B;  3NHG A;  4JS5 A;  2JH8 A;  2OZS A;  4HCC A;  3RMA A;  4DTR A;  3V7D B;  4KHS A;  4KHU A;  3E4Y A;  2RCU A;  4RNG A;  1XMF E;  3OGL B;  4DTJ A;  2DTU A;  4M3R A;  2VJ5 A;  1FZ6 E;  1NEX B;  2E32 A;  3K2O A;  3TL8 B;  4DTN A;  3SUO A;  1FZ3 E;  4DTU A;  4KI6 A;  3N1E A;  4AKH A;  1XU3 E;  2VJ4 A;  2P5G A;  4FJJ A;  4RG8 A;  3SNN A;  2DEB A;  4EP9 A;  4M41 A;  4DTM A;  3TAG A;  3L1N A;  4I9Q A;  4FK0 A;  4FJ7 A;  4AI6 A;  5H37 A;  1FZ5 E;  3SCX A;  3MKS B;  4KHQ A;  2B8I A;  3NCI A;  3C94 A;  3NGI A;  3L2O B;  4QND A;  2P5O A;  4J2E A;  3SQ0 A;  4M3T A;  1FS1 A;  4ADO A;  4JRP A;  3QER A;  3C6N B;  1IG9 A;  1XVB E;  1XMG E;  3HL8 A;  2P1N B;  1Q9Y A;  3RMB A;  3LZI A;  3SQ4 A;  2JHP A;  3CFO A;  4M3X A;  3NAE A;  1FZH E;  3CFR A;  5IBK B;  3C95 A;  1MMO G;  4X5N A;  3SI6 A;  2P1P B;  1P22 A;  4FK2 A;  4J2B A;  4DTP A;  3LDB A;  3TAB A;  4EYW A;  4M42 A;  1XVD E;  1XMH E;  3KD1 E;  4B08 A;  4ADN A;  4J2A A;  2PFV A;  2YB5 A;  3SJJ A;  3L0M A;  1FZ7 E;  3RMC A;  2FYO A;  3SUP A;  4KI4 A;  3NDK A;  1XU5 E;  2P1O B;  3C6P B;  1LDK E;  3HGL A;  4DU3 A;  1WAJ A;  4KHW A;  2HD0 A;  2P1Q B;  4AKI A;  1FXX A;  3QEI A;  4EPH A;  2LF3 A;  3QEV A;  3TJY A;  3QEX A;  3SQ1 A;  2H4T A;  4M3W A;  4M3Y A;  3S9H A;  2MZW B;  4I9L A;  3WSO A;  4FJL A;  2B7M A;  3E4W A;  3RMD A;  3SUN A;  4FJ9 A;  3CQ8 A;  4FJK A;  4AKG A;  2OZM A;  1FZ0 E;  4RL5 A;  1IH7 A;  4DTO A;  4M3U A;  2P1M B;  4DTX A;  3LDS A;  1MHZ G;  3UIQ A;  2JH9 A;  4M45 A;  2E31 A;  3SUQ A;  2ATQ A;  2PFT A;  3QEP A;  1MHY G;  2B1E A;  3OGK B;  3TAE A;  4FJM A;  2FW3 A;  3RWU A;  2OYQ A;  4I6J B;  1CLQ A;  1XVF E;  1FYZ E;  4JS4 A;  4J2D A;  3N1B A;  2LF6 A;  4DU1 A;  1XL3 C;  1XVE E;  4HCB A;  4E4B A;  3QEW A;  3J2P A;  4FJN A;  4KHY A;  3SQ2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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