2LF3A

Solution nmr structure of hoppmal_281_385 from pseudomonas syringae pv. maculicola str. es4326, midwest center for structural genomics target apc40104.5 and northeast structural genomics consortium target pst2a
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
105
structure length
105
Chain Sequence
SQRPVDRNPPRINLMPTGANRVAMRNRGNNEADAALQALAQNGINMEDLRAALEAYIVWLRPIPLDIANALEGVGITPRFDNPEEAKVDNPLMNLSSALKRRLDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
source organism Pseudomonas syringae pv. maculicola
publication title Structural Analysis of HopPmaL Reveals the Presence of a Second Adaptor Domain Common to the HopAB Family of Pseudomonas syringae Type III Effectors.
pubmed doi rcsb
molecule keywords Effector protein hopAB3
total genus 25
structure length 105
sequence length 105
ec nomenclature
pdb deposition date 2011-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16847 AvrPtoB_bdg Avirulence AvrPtoB, BAK1-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.220 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 2lf3A00
3TL8B 2LF3A 2LF6A
chains in the Genus database with same CATH superfamily
4KHWA 4FJNA 4FJHA 3CFRA 4DTJA 1FZ2E 2VIXA 4GAMC 1IG9A 1XL3C 3RMAA 3L0MA 3SUPA 1FPOA 2K5SA 3RMCA 2DY4A 3RMBA 2RCUA 3NE6A 3TAGA 2P5GA 4EYWA 1FXXA 3OGMB 2OVRB 4J2BA 4FJ8A 4DU1A 1XVGE 2B1EA 3TAEA 2LF3A 4J2AA 3RWUA 2P1QB 3NGIA 4IT5A 3C6OB 5IZ7A 1XVBE 3TABA 4RG8A 3SVIA 1FZHE 4AKIA 3HL8A 2JH8A 4QNCA 3KD5E 2VJ5A 3UO2A 4FJIA 4M3WA 4AI6A 2JHCA 4M3YA 1JW2A 1WAFA 4FJJA 1MMOG 2H4TA 4EP9A 4JRPA 1Q9XA 4J2EA 4DTNA 4DTPA 2YB5A 4M3ZA 4FJ9A 4M42A 4ADNA 3SNNA 2QXFA 5IREA 4FJGA 4FJLA 2HD0A 3TL8B 3SPYA 3LDBA 3QERA 3NHGA 3CFPA 2JHPA 1XMFE 2OZMA 2FW3A 2DEBA 1FZ0E 4KI6A 4B08A 3CFOA 4FJKA 2MW2A 3LZJA 1FZ8E 3E4WA 3QEIA 3C94A 4HCBA 4FVMA 3NCIA 4DU3A 4M3UA 3L1NA 2MMBA 1FZ1E 3TAFA 1CLQA 2VJ4A 4KHSA 1FZ5E 5IBKB 3QEXA 4KHYA 3SCXA 4FK4A 4DU4A 1FZIE 3MKSB 2PFTA 4E4BA 4DTRA 3SQ0A 3SI6A 2B7MA 2JHAA 4JS4A 2OVPB 1XMGE 3WSOA 4FJXA 3LZIA 2FYOA 3QEWA 3SJJA 3RMDA 2JPNA 4FK2A 3NDKA 2E31A 3J27A 4E3SA 2DTUA 2P1MB 2OZSA 3E4YA 3CQ8A 4HCCA 5H37A 3QNNA 1XU5E 1MTYG 3NAEA 4DTMA 4DTUA 3SPZA 2ATQA 2JQTA 4JS5A 2JH9A 3LD8A 4ICGC 4RNGA 4KHUA 4X5MA 3N1BA 1XVDE 1FS1A 4AKGA 3BVOA 4KHQA 1XU3E 3LDSA 1XVCE 1FYZE 3SUNA 2OYQA 4FJ5A 1MHZG 1IH7A 4EPHA 3QEPA 3UIQA 3TJYA 3QEVA 3SQ1A 4FK0A 4RL5A 2P1NB 3HGLA 4I6JB 4DTOA 3QETA 2OVQB 3SUQA 4KI4A 4DTXA 3SQ2A 3V7DB 2B8IA 1Q9YA 3KD1E 2P1OB 4I9LA 4M3XA 3L2OB 1FZ9E 2E32A 1LDKE 1N1CA 2P5OA 4M41A 4FJMA 3C6PB 4QNDA 3QESA 1XVEE 4AKHA 3L8BA 1P22A 2RKHA 3C95A 1NEXB 1WAJA 1FZ4E 3K2OA 3N1EA 3UO3A 3SQ4A 2P1PB 2LF6A 1MHYG 4JRQA 1XMHE 3OGLB 4X5NA 4J2DA 3C6NB 4DTSA 4FJ7A 1XVFE 3J2PA 4KHNA 4M3TA 1FZ7E 4I9QA 4M3RA 4M45A 4ADOA 3SUOA 3S9HA 1FZ6E 1FZ3E 3OGKB 3QNOA 2PFVA 3HGKE 2MZWB 3HP9A
chains in the Genus database with same CATH topology
4KHWA 4FJNA 4FJHA 3CFRA 4DTJA 1FZ2E 2VIXA 4GAMC 1IG9A 1XL3C 3RMAA 3L0MA 3SUPA 3RMCA 2DY4A 3RMBA 2RCUA 3NE6A 3TAGA 2P5GA 4EYWA 1FXXA 3OGMB 2OVRB 4J2BA 4FJ8A 4DU1A 1XVGE 2B1EA 3TAEA 2LF3A 4J2AA 3RWUA 2P1QB 3NGIA 3C6OB 5IZ7A 1XVBE 3TABA 4RG8A 3SVIA 1FZHE 4AKIA 3HL8A 2JH8A 4QNCA 3KD5E 2VJ5A 4FJIA 4M3WA 4AI6A 2JHCA 4M3YA 1WAFA 4FJJA 1MMOG 2H4TA 4EP9A 4JRPA 1Q9XA 4J2EA 4DTNA 4DTPA 2YB5A 4M3ZA 4FJ9A 4M42A 4ADNA 3SNNA 2QXFA 5IREA 4FJGA 4FJLA 2HD0A 3TL8B 3SPYA 3LDBA 3QERA 3NHGA 3CFPA 2JHPA 1XMFE 2OZMA 2FW3A 2DEBA 1FZ0E 4KI6A 4B08A 3CFOA 4FJKA 3LZJA 1FZ8E 3E4WA 3QEIA 3C94A 4HCBA 4FVMA 3NCIA 4DU3A 4M3UA 3L1NA 2MMBA 1FZ1E 3TAFA 1CLQA 2VJ4A 4KHSA 1FZ5E 5IBKB 3QEXA 4KHYA 3SCXA 4FK4A 4DU4A 1FZIE 3MKSB 2PFTA 4E4BA 4DTRA 3SQ0A 3SI6A 2B7MA 2JHAA 4JS4A 2OVPB 1XMGE 3WSOA 4FJXA 3LZIA 2FYOA 3QEWA 3SJJA 3RMDA 2JPNA 4FK2A 3NDKA 2E31A 3J27A 4E3SA 2DTUA 2P1MB 2OZSA 3E4YA 3CQ8A 4HCCA 5H37A 3QNNA 1XU5E 1MTYG 3NAEA 4DTMA 4DTUA 3SPZA 2ATQA 4JS5A 2JH9A 3LD8A 4RNGA 4KHUA 4X5MA 3N1BA 1XVDE 1FS1A 4AKGA 4KHQA 1XU3E 3LDSA 1XVCE 1FYZE 3SUNA 2OYQA 4FJ5A 1MHZG 1IH7A 4EPHA 3QEPA 3UIQA 3TJYA 3QEVA 3SQ1A 4FK0A 4RL5A 2P1NB 3HGLA 4I6JB 4DTOA 3QETA 2OVQB 3SUQA 4KI4A 4DTXA 3SQ2A 3V7DB 2B8IA 1Q9YA 3KD1E 2P1OB 4I9LA 4M3XA 3L2OB 1FZ9E 2E32A 1LDKE 2P5OA 4M41A 4FJMA 3C6PB 4QNDA 3QESA 1XVEE 4AKHA 3L8BA 1P22A 3C95A 1NEXB 1WAJA 1FZ4E 3K2OA 3N1EA 3SQ4A 2P1PB 2LF6A 1MHYG 4JRQA 1XMHE 3OGLB 4X5NA 4J2DA 3C6NB 4DTSA 4FJ7A 1XVFE 3J2PA 4KHNA 4M3TA 1FZ7E 4I9QA 4M3RA 4M45A 4ADOA 3SUOA 3S9HA 1FZ6E 1FZ3E 3OGKB 3QNOA 2PFVA 3HGKE 2MZWB 3HP9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TL8 B;  2LF3 A;  2LF6 A; 
#chains in the Genus database with same CATH topology
 4KHW A;  4FJN A;  4FJH A;  3CFR A;  4DTJ A;  1FZ2 E;  2VIX A;  4GAM C;  1IG9 A;  1XL3 C;  3RMA A;  3L0M A;  3SUP A;  1FPO A;  2K5S A;  3RMC A;  2DY4 A;  3RMB A;  2RCU A;  3NE6 A;  3TAG A;  2P5G A;  4EYW A;  1FXX A;  3OGM B;  2OVR B;  4J2B A;  4FJ8 A;  4DU1 A;  1XVG E;  2B1E A;  3TAE A;  2LF3 A;  4J2A A;  3RWU A;  2P1Q B;  3NGI A;  4IT5 A;  3C6O B;  5IZ7 A;  1XVB E;  3TAB A;  4RG8 A;  3SVI A;  1FZH E;  4AKI A;  3HL8 A;  2JH8 A;  4QNC A;  3KD5 E;  2VJ5 A;  3UO2 A;  4FJI A;  4M3W A;  4AI6 A;  2JHC A;  4M3Y A;  1JW2 A;  1WAF A;  4FJJ A;  1MMO G;  2H4T A;  4EP9 A;  4JRP A;  1Q9X A;  4J2E A;  4DTN A;  4DTP A;  2YB5 A;  4M3Z A;  4FJ9 A;  4M42 A;  4ADN A;  3SNN A;  2QXF A;  5IRE A;  4FJG A;  4FJL A;  2HD0 A;  3TL8 B;  3SPY A;  3LDB A;  3QER A;  3NHG A;  3CFP A;  2JHP A;  1XMF E;  2OZM A;  2FW3 A;  2DEB A;  1FZ0 E;  4KI6 A;  4B08 A;  3CFO A;  4FJK A;  2MW2 A;  3LZJ A;  1FZ8 E;  3E4W A;  3QEI A;  3C94 A;  4HCB A;  4FVM A;  3NCI A;  4DU3 A;  4M3U A;  3L1N A;  2MMB A;  1FZ1 E;  3TAF A;  1CLQ A;  2VJ4 A;  4KHS A;  1FZ5 E;  5IBK B;  3QEX A;  4KHY A;  3SCX A;  4FK4 A;  4DU4 A;  1FZI E;  3MKS B;  2PFT A;  4E4B A;  4DTR A;  3SQ0 A;  3SI6 A;  2B7M A;  2JHA A;  4JS4 A;  2OVP B;  1XMG E;  3WSO A;  4FJX A;  3LZI A;  2FYO A;  3QEW A;  3SJJ A;  3RMD A;  2JPN A;  4FK2 A;  3NDK A;  2E31 A;  3J27 A;  4E3S A;  2DTU A;  2P1M B;  2OZS A;  3E4Y A;  3CQ8 A;  4HCC A;  5H37 A;  3QNN A;  1XU5 E;  1MTY G;  3NAE A;  4DTM A;  4DTU A;  3SPZ A;  2ATQ A;  2JQT A;  4JS5 A;  2JH9 A;  3LD8 A;  4ICG C;  4RNG A;  4KHU A;  4X5M A;  3N1B A;  1XVD E;  1FS1 A;  4AKG A;  3BVO A;  4KHQ A;  1XU3 E;  3LDS A;  1XVC E;  1FYZ E;  3SUN A;  2OYQ A;  4FJ5 A;  1MHZ G;  1IH7 A;  4EPH A;  3QEP A;  3UIQ A;  3TJY A;  3QEV A;  3SQ1 A;  4FK0 A;  4RL5 A;  2P1N B;  3HGL A;  4I6J B;  4DTO A;  3QET A;  2OVQ B;  3SUQ A;  4KI4 A;  4DTX A;  3SQ2 A;  3V7D B;  2B8I A;  1Q9Y A;  3KD1 E;  2P1O B;  4I9L A;  4M3X A;  3L2O B;  1FZ9 E;  2E32 A;  1LDK E;  1N1C A;  2P5O A;  4M41 A;  4FJM A;  3C6P B;  4QND A;  3QES A;  1XVE E;  4AKH A;  3L8B A;  1P22 A;  2RKH A;  3C95 A;  1NEX B;  1WAJ A;  1FZ4 E;  3K2O A;  3N1E A;  3UO3 A;  3SQ4 A;  2P1P B;  2LF6 A;  1MHY G;  4JRQ A;  1XMH E;  3OGL B;  4X5N A;  4J2D A;  3C6N B;  4DTS A;  4FJ7 A;  1XVF E;  3J2P A;  4KHN A;  4M3T A;  1FZ7 E;  4I9Q A;  4M3R A;  4M45 A;  4ADO A;  3SUO A;  3S9H A;  1FZ6 E;  1FZ3 E;  3OGK B;  3QNO A;  2PFV A;  3HGK E;  2MZW B;  3HP9 A; 
#chains in the Genus database with same CATH homology
 4KHW A;  4FJN A;  4FJH A;  3CFR A;  4DTJ A;  1FZ2 E;  2VIX A;  4GAM C;  1IG9 A;  1XL3 C;  3RMA A;  3L0M A;  3SUP A;  3RMC A;  2DY4 A;  3RMB A;  2RCU A;  3NE6 A;  3TAG A;  2P5G A;  4EYW A;  1FXX A;  3OGM B;  2OVR B;  4J2B A;  4FJ8 A;  4DU1 A;  1XVG E;  2B1E A;  3TAE A;  2LF3 A;  4J2A A;  3RWU A;  2P1Q B;  3NGI A;  3C6O B;  5IZ7 A;  1XVB E;  3TAB A;  4RG8 A;  3SVI A;  1FZH E;  4AKI A;  3HL8 A;  2JH8 A;  4QNC A;  3KD5 E;  2VJ5 A;  4FJI A;  4M3W A;  4AI6 A;  2JHC A;  4M3Y A;  1WAF A;  4FJJ A;  1MMO G;  2H4T A;  4EP9 A;  4JRP A;  1Q9X A;  4J2E A;  4DTN A;  4DTP A;  2YB5 A;  4M3Z A;  4FJ9 A;  4M42 A;  4ADN A;  3SNN A;  2QXF A;  5IRE A;  4FJG A;  4FJL A;  2HD0 A;  3TL8 B;  3SPY A;  3LDB A;  3QER A;  3NHG A;  3CFP A;  2JHP A;  1XMF E;  2OZM A;  2FW3 A;  2DEB A;  1FZ0 E;  4KI6 A;  4B08 A;  3CFO A;  4FJK A;  3LZJ A;  1FZ8 E;  3E4W A;  3QEI A;  3C94 A;  4HCB A;  4FVM A;  3NCI A;  4DU3 A;  4M3U A;  3L1N A;  2MMB A;  1FZ1 E;  3TAF A;  1CLQ A;  2VJ4 A;  4KHS A;  1FZ5 E;  5IBK B;  3QEX A;  4KHY A;  3SCX A;  4FK4 A;  4DU4 A;  1FZI E;  3MKS B;  2PFT A;  4E4B A;  4DTR A;  3SQ0 A;  3SI6 A;  2B7M A;  2JHA A;  4JS4 A;  2OVP B;  1XMG E;  3WSO A;  4FJX A;  3LZI A;  2FYO A;  3QEW A;  3SJJ A;  3RMD A;  2JPN A;  4FK2 A;  3NDK A;  2E31 A;  3J27 A;  4E3S A;  2DTU A;  2P1M B;  2OZS A;  3E4Y A;  3CQ8 A;  4HCC A;  5H37 A;  3QNN A;  1XU5 E;  1MTY G;  3NAE A;  4DTM A;  4DTU A;  3SPZ A;  2ATQ A;  4JS5 A;  2JH9 A;  3LD8 A;  4RNG A;  4KHU A;  4X5M A;  3N1B A;  1XVD E;  1FS1 A;  4AKG A;  4KHQ A;  1XU3 E;  3LDS A;  1XVC E;  1FYZ E;  3SUN A;  2OYQ A;  4FJ5 A;  1MHZ G;  1IH7 A;  4EPH A;  3QEP A;  3UIQ A;  3TJY A;  3QEV A;  3SQ1 A;  4FK0 A;  4RL5 A;  2P1N B;  3HGL A;  4I6J B;  4DTO A;  3QET A;  2OVQ B;  3SUQ A;  4KI4 A;  4DTX A;  3SQ2 A;  3V7D B;  2B8I A;  1Q9Y A;  3KD1 E;  2P1O B;  4I9L A;  4M3X A;  3L2O B;  1FZ9 E;  2E32 A;  1LDK E;  2P5O A;  4M41 A;  4FJM A;  3C6P B;  4QND A;  3QES A;  1XVE E;  4AKH A;  3L8B A;  1P22 A;  3C95 A;  1NEX B;  1WAJ A;  1FZ4 E;  3K2O A;  3N1E A;  3SQ4 A;  2P1P B;  2LF6 A;  1MHY G;  4JRQ A;  1XMH E;  3OGL B;  4X5N A;  4J2D A;  3C6N B;  4DTS A;  4FJ7 A;  1XVF E;  3J2P A;  4KHN A;  4M3T A;  1FZ7 E;  4I9Q A;  4M3R A;  4M45 A;  4ADO A;  3SUO A;  3S9H A;  1FZ6 E;  1FZ3 E;  3OGK B;  3QNO A;  2PFV A;  3HGK E;  2MZW B;  3HP9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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