2PFT | Genus

Total Genus 222

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	222
sequence length	568
structure length	519
Chain Sequence	DHVISYYHVASDTEKIIREGPTGRLEEYLGSMAKIQKAVEYFQDNSPDSPELNKVKLLFERGKESLESEFRSLMTRHSKVVSPVLLLDLISADDELEHLPESVLRDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLKEHFRKSLDVETDAYIHCVSAFVKLAQSEYRLLMEIIPEHHQKKTFDSLIQDALDGLMLEGENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVLQGTAASTKNKLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQESSEFSKRLLSTYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTYQRSWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRLFDTS

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Endocytosis/exocytosis
source organism	Mus musculus
publication title	The crystal structure of mouse Exo70 reveals unique features of the mammalian exocyst. pubmed doi rcsb
molecule keywords	Exocytosis Protein
total genus	222
structure length	519
sequence length	568
ec nomenclature
pdb deposition date	2007-04-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03081	Exo70	Exo70 exocyst complex subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1280.170	Mainly Alpha	Up-down Bundle	Monooxygenase	Monooxygenase	2pftA00

2PFTA 2B7MA 4RL5A 2PFVA 2B1EA
chains in the Genus database with same CATH superfamily

3QNOA 3QEPA 3C94A 1N1CA 2P1MB 3L0MA 3TAGA 3SQ4A 3CFRA 3NGIA 3TABA 5IZ7A 3RMBA 4FJJA 2QXFA 3QEWA 4DU3A 4FJKA 2OVQB 2YB5A 2OVRB 4KHQA 3HGKE 2OZMA 1XMFE 4M3ZA 4M42A 1XL3C 4I9LA 3SQ1A 4KHWA 2JHAA 1XU5E 3QETA 4JRQA 3L2OB 4DTUA 1MMOG 4EPHA 3QEVA 2JPNA 2OZSA 3SUOA 3NCIA 4JS4A 4HCCA 4DTPA 2FYOA 2P5GA 1IH7A 2HD0A 4DTMA 2PFVA 4DU4A 1WAFA 4M3WA 2RCUA 2H4TA 3CFPA 1NEXB 3LZJA 4ICGC 1FZ5E 3LDBA 1Q9YA 1FZ2E 2B1EA 4J2BA 4AI6A 3J2PA 4DU1A 2P1QB 2P1PB 3N1EA 4KI6A 3QERA 4RNGA 2P1OB 4FJ9A 4EP9A 1FZ8E 1XVCE 1XMGE 4DTOA 3QESA 1P22A 4X5NA 2VJ4A 4FK4A 1Q9XA 2E32A 1XMHE 3SPYA 3SVIA 2PFTA 3RWUA 4FJGA 3L8BA 2B7MA 3OGMB 2DEBA 4X5MA 2LF3A 2VJ5A 2RKHA 3WSOA 2JHCA 1FZ4E 3C6OB 4DTSA 3UO3A 1XVBE 5H37A 3V7DB 4HCBA 4IT5A 3RMAA 4B08A 2K5SA 4M3UA 2MW2A 1FZ1E 2ATQA 4DTNA 3TAEA 4EYWA 1XVEE 4DTJA 1FZHE 3LZIA 3SQ2A 1MTYG 3K2OA 1XVGE 4M3XA 3J27A 4FJXA 1FZ7E 2FW3A 3RMDA 1CLQA 1XU3E 3NDKA 3SQ0A 4FJMA 3CQ8A 1MHYG 2JQTA 1FS1A 4RG8A 4KHSA 4J2AA 1WAJA 3UO2A 4KHYA 1JW2A 4M3RA 3HL8A 4AKGA 3SUNA 4DTXA 3MKSB 1FYZE 2JHPA 3SUPA 3HGLA 4M41A 1FZIE 1FZ3E 3LD8A 3QEXA 4FJ7A 3UIQA 4E4BA 3QNNA 3TAFA 2MZWB 4KHNA 3HP9A 2E31A 2P5OA 2MMBA 4FJ5A 3OGLB 4I9QA 4FJ8A 1FZ9E 4FJLA 4JRPA 3CFOA 1FZ6E 3BVOA 1XVFE 4M3TA 4KHUA 4M3YA 3SNNA 3KD5E 4JS5A 3NAEA 3E4YA 3SCXA 1FPOA 3QEIA 4FJNA 2OVPB 4J2DA 4AKHA 3SI6A 2LF6A 3SJJA 3TJYA 4QNCA 2DY4A 4GAMC 4DTRA 4RL5A 3N1BA 1FZ0E 4QNDA 3LDSA 3L1NA 3RMCA 3S9HA 1IG9A 3KD1E 1FXXA 4J2EA 1LDKE 4FJHA 4ADNA 2B8IA 3C95A 4I6JB 2OYQA 3E4WA 5IBKB 1MHZG 2DTUA 3SPZA 4FK2A 3OGKB 2JH8A 3SUQA 4FVMA 2VIXA 2P1NB 3TL8B 4M45A 3C6PB 4E3SA 1XVDE 5IREA 4FJIA 4FK0A 2JH9A 3C6NB 4ADOA 3NHGA 3NE6A 4KI4A 4AKIA
chains in the Genus database with same CATH topology

3QNOA 3QEPA 3C94A 2P1MB 3L0MA 3TAGA 3SQ4A 3CFRA 3NGIA 3TABA 5IZ7A 3RMBA 4FJJA 2QXFA 3QEWA 4DU3A 4FJKA 2OVQB 2YB5A 2OVRB 4KHQA 3HGKE 2OZMA 1XMFE 4M3ZA 4M42A 1XL3C 4I9LA 3SQ1A 4KHWA 2JHAA 1XU5E 3QETA 4JRQA 3L2OB 4DTUA 1MMOG 4EPHA 3QEVA 2JPNA 2OZSA 3SUOA 3NCIA 4JS4A 4HCCA 4DTPA 2FYOA 2P5GA 1IH7A 2HD0A 4DTMA 2PFVA 4DU4A 1WAFA 4M3WA 2RCUA 2H4TA 3CFPA 1NEXB 3LZJA 1FZ5E 3LDBA 1Q9YA 1FZ2E 2B1EA 4J2BA 4AI6A 3J2PA 4DU1A 2P1QB 2P1PB 3N1EA 4KI6A 3QERA 4RNGA 2P1OB 4FJ9A 4EP9A 1FZ8E 1XVCE 1XMGE 4DTOA 3QESA 1P22A 4X5NA 2VJ4A 4FK4A 1Q9XA 2E32A 1XMHE 3SPYA 3SVIA 2PFTA 3RWUA 4FJGA 3L8BA 2B7MA 3OGMB 2DEBA 4X5MA 2LF3A 2VJ5A 3WSOA 2JHCA 1FZ4E 3C6OB 4DTSA 4HCBA 1XVBE 5H37A 3V7DB 3RMAA 4B08A 4M3UA 1FZ1E 2ATQA 4DTNA 3TAEA 4EYWA 1XVEE 4DTJA 1FZHE 3LZIA 3SQ2A 1MTYG 3K2OA 1XVGE 4M3XA 3J27A 4FJXA 1FZ7E 2FW3A 3RMDA 1CLQA 1XU3E 3NDKA 3SQ0A 4FJMA 3CQ8A 1MHYG 4KHSA 1FS1A 4RG8A 4J2AA 1WAJA 4KHYA 4M3RA 3HL8A 4AKGA 3SUNA 4DTXA 3MKSB 1FYZE 2JHPA 3SUPA 3HGLA 4M41A 1FZIE 1FZ3E 3LD8A 3QEXA 4FJ7A 3UIQA 4E4BA 3QNNA 3TAFA 2MZWB 4KHNA 3HP9A 2E31A 2P5OA 2MMBA 4FJ5A 3OGLB 4I9QA 4FJ8A 1FZ9E 4FJLA 4JRPA 3CFOA 1FZ6E 1XVFE 4M3TA 4KHUA 4M3YA 3SNNA 3KD5E 4JS5A 3NAEA 3E4YA 3SCXA 3QEIA 4AKHA 4FJNA 2OVPB 4J2DA 3SI6A 2LF6A 3SJJA 3TJYA 4QNCA 2DY4A 4GAMC 4DTRA 4RL5A 3N1BA 1FZ0E 4QNDA 3LDSA 3L1NA 3RMCA 3S9HA 1IG9A 3KD1E 1FXXA 4J2EA 1LDKE 4FJHA 4ADNA 2B8IA 3C95A 4I6JB 2OYQA 3E4WA 5IBKB 1MHZG 2DTUA 3SPZA 4FK2A 3OGKB 2JH8A 3SUQA 4FVMA 2VIXA 2P1NB 3TL8B 4M45A 3C6PB 4E3SA 1XVDE 5IREA 4FJIA 4FK0A 2JH9A 3C6NB 4ADOA 3NHGA 3NE6A 4KI4A 4AKIA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2PFT A;  2B7M A;  4RL5 A;  2PFV A;  2B1E A; 
#chains in the Genus database with same CATH topology
 3QNO A;  3QEP A;  3C94 A;  1N1C A;  2P1M B;  3L0M A;  3TAG A;  3SQ4 A;  3CFR A;  3NGI A;  3TAB A;  5IZ7 A;  3RMB A;  4FJJ A;  2QXF A;  3QEW A;  4DU3 A;  4FJK A;  2OVQ B;  2YB5 A;  2OVR B;  4KHQ A;  3HGK E;  2OZM A;  1XMF E;  4M3Z A;  4M42 A;  1XL3 C;  4I9L A;  3SQ1 A;  4KHW A;  2JHA A;  1XU5 E;  3QET A;  4JRQ A;  3L2O B;  4DTU A;  1MMO G;  4EPH A;  3QEV A;  2JPN A;  2OZS A;  3SUO A;  3NCI A;  4JS4 A;  4HCC A;  4DTP A;  2FYO A;  2P5G A;  1IH7 A;  2HD0 A;  4DTM A;  2PFV A;  4DU4 A;  1WAF A;  4M3W A;  2RCU A;  2H4T A;  3CFP A;  1NEX B;  3LZJ A;  4ICG C;  1FZ5 E;  3LDB A;  1Q9Y A;  1FZ2 E;  2B1E A;  4J2B A;  4AI6 A;  3J2P A;  4DU1 A;  2P1Q B;  2P1P B;  3N1E A;  4KI6 A;  3QER A;  4RNG A;  2P1O B;  4FJ9 A;  4EP9 A;  1FZ8 E;  1XVC E;  1XMG E;  4DTO A;  3QES A;  1P22 A;  4X5N A;  2VJ4 A;  4FK4 A;  1Q9X A;  2E32 A;  1XMH E;  3SPY A;  3SVI A;  2PFT A;  3RWU A;  4FJG A;  3L8B A;  2B7M A;  3OGM B;  2DEB A;  4X5M A;  2LF3 A;  2VJ5 A;  2RKH A;  3WSO A;  2JHC A;  1FZ4 E;  3C6O B;  4DTS A;  3UO3 A;  1XVB E;  5H37 A;  3V7D B;  4HCB A;  4IT5 A;  3RMA A;  4B08 A;  2K5S A;  4M3U A;  2MW2 A;  1FZ1 E;  2ATQ A;  4DTN A;  3TAE A;  4EYW A;  1XVE E;  4DTJ A;  1FZH E;  3LZI A;  3SQ2 A;  1MTY G;  3K2O A;  1XVG E;  4M3X A;  3J27 A;  4FJX A;  1FZ7 E;  2FW3 A;  3RMD A;  1CLQ A;  1XU3 E;  3NDK A;  3SQ0 A;  4FJM A;  3CQ8 A;  1MHY G;  2JQT A;  1FS1 A;  4RG8 A;  4KHS A;  4J2A A;  1WAJ A;  3UO2 A;  4KHY A;  1JW2 A;  4M3R A;  3HL8 A;  4AKG A;  3SUN A;  4DTX A;  3MKS B;  1FYZ E;  2JHP A;  3SUP A;  3HGL A;  4M41 A;  1FZI E;  1FZ3 E;  3LD8 A;  3QEX A;  4FJ7 A;  3UIQ A;  4E4B A;  3QNN A;  3TAF A;  2MZW B;  4KHN A;  3HP9 A;  2E31 A;  2P5O A;  2MMB A;  4FJ5 A;  3OGL B;  4I9Q A;  4FJ8 A;  1FZ9 E;  4FJL A;  4JRP A;  3CFO A;  1FZ6 E;  3BVO A;  1XVF E;  4M3T A;  4KHU A;  4M3Y A;  3SNN A;  3KD5 E;  4JS5 A;  3NAE A;  3E4Y A;  3SCX A;  1FPO A;  3QEI A;  4FJN A;  2OVP B;  4J2D A;  4AKH A;  3SI6 A;  2LF6 A;  3SJJ A;  3TJY A;  4QNC A;  2DY4 A;  4GAM C;  4DTR A;  4RL5 A;  3N1B A;  1FZ0 E;  4QND A;  3LDS A;  3L1N A;  3RMC A;  3S9H A;  1IG9 A;  3KD1 E;  1FXX A;  4J2E A;  1LDK E;  4FJH A;  4ADN A;  2B8I A;  3C95 A;  4I6J B;  2OYQ A;  3E4W A;  5IBK B;  1MHZ G;  2DTU A;  3SPZ A;  4FK2 A;  3OGK B;  2JH8 A;  3SUQ A;  4FVM A;  2VIX A;  2P1N B;  3TL8 B;  4M45 A;  3C6P B;  4E3S A;  1XVD E;  5IRE A;  4FJI A;  4FK0 A;  2JH9 A;  3C6N B;  4ADO A;  3NHG A;  3NE6 A;  4KI4 A;  4AKI A; 
#chains in the Genus database with same CATH homology
 3QNO A;  3QEP A;  3C94 A;  2P1M B;  3L0M A;  3TAG A;  3SQ4 A;  3CFR A;  3NGI A;  3TAB A;  5IZ7 A;  3RMB A;  4FJJ A;  2QXF A;  3QEW A;  4DU3 A;  4FJK A;  2OVQ B;  2YB5 A;  2OVR B;  4KHQ A;  3HGK E;  2OZM A;  1XMF E;  4M3Z A;  4M42 A;  1XL3 C;  4I9L A;  3SQ1 A;  4KHW A;  2JHA A;  1XU5 E;  3QET A;  4JRQ A;  3L2O B;  4DTU A;  1MMO G;  4EPH A;  3QEV A;  2JPN A;  2OZS A;  3SUO A;  3NCI A;  4JS4 A;  4HCC A;  4DTP A;  2FYO A;  2P5G A;  1IH7 A;  2HD0 A;  4DTM A;  2PFV A;  4DU4 A;  1WAF A;  4M3W A;  2RCU A;  2H4T A;  3CFP A;  1NEX B;  3LZJ A;  1FZ5 E;  3LDB A;  1Q9Y A;  1FZ2 E;  2B1E A;  4J2B A;  4AI6 A;  3J2P A;  4DU1 A;  2P1Q B;  2P1P B;  3N1E A;  4KI6 A;  3QER A;  4RNG A;  2P1O B;  4FJ9 A;  4EP9 A;  1FZ8 E;  1XVC E;  1XMG E;  4DTO A;  3QES A;  1P22 A;  4X5N A;  2VJ4 A;  4FK4 A;  1Q9X A;  2E32 A;  1XMH E;  3SPY A;  3SVI A;  2PFT A;  3RWU A;  4FJG A;  3L8B A;  2B7M A;  3OGM B;  2DEB A;  4X5M A;  2LF3 A;  2VJ5 A;  3WSO A;  2JHC A;  1FZ4 E;  3C6O B;  4DTS A;  4HCB A;  1XVB E;  5H37 A;  3V7D B;  3RMA A;  4B08 A;  4M3U A;  1FZ1 E;  2ATQ A;  4DTN A;  3TAE A;  4EYW A;  1XVE E;  4DTJ A;  1FZH E;  3LZI A;  3SQ2 A;  1MTY G;  3K2O A;  1XVG E;  4M3X A;  3J27 A;  4FJX A;  1FZ7 E;  2FW3 A;  3RMD A;  1CLQ A;  1XU3 E;  3NDK A;  3SQ0 A;  4FJM A;  3CQ8 A;  1MHY G;  4KHS A;  1FS1 A;  4RG8 A;  4J2A A;  1WAJ A;  4KHY A;  4M3R A;  3HL8 A;  4AKG A;  3SUN A;  4DTX A;  3MKS B;  1FYZ E;  2JHP A;  3SUP A;  3HGL A;  4M41 A;  1FZI E;  1FZ3 E;  3LD8 A;  3QEX A;  4FJ7 A;  3UIQ A;  4E4B A;  3QNN A;  3TAF A;  2MZW B;  4KHN A;  3HP9 A;  2E31 A;  2P5O A;  2MMB A;  4FJ5 A;  3OGL B;  4I9Q A;  4FJ8 A;  1FZ9 E;  4FJL A;  4JRP A;  3CFO A;  1FZ6 E;  1XVF E;  4M3T A;  4KHU A;  4M3Y A;  3SNN A;  3KD5 E;  4JS5 A;  3NAE A;  3E4Y A;  3SCX A;  3QEI A;  4AKH A;  4FJN A;  2OVP B;  4J2D A;  3SI6 A;  2LF6 A;  3SJJ A;  3TJY A;  4QNC A;  2DY4 A;  4GAM C;  4DTR A;  4RL5 A;  3N1B A;  1FZ0 E;  4QND A;  3LDS A;  3L1N A;  3RMC A;  3S9H A;  1IG9 A;  3KD1 E;  1FXX A;  4J2E A;  1LDK E;  4FJH A;  4ADN A;  2B8I A;  3C95 A;  4I6J B;  2OYQ A;  3E4W A;  5IBK B;  1MHZ G;  2DTU A;  3SPZ A;  4FK2 A;  3OGK B;  2JH8 A;  3SUQ A;  4FVM A;  2VIX A;  2P1N B;  3TL8 B;  4M45 A;  3C6P B;  4E3S A;  1XVD E;  5IRE A;  4FJI A;  4FK0 A;  2JH9 A;  3C6N B;  4ADO A;  3NHG A;  3NE6 A;  4KI4 A;  4AKI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2PFTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations