3HGKE

Crystal structure of effect protein avrptob complexed with kinase pto
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
77
structure length
77
Chain Sequence
GAVAHANSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of the Complex between Pseudomonas Effector AvrPtoB and the Tomato Pto Kinase Reveals Both a Shared and a Unique Interface Compared with AvrPto-Pto
pubmed doi rcsb
molecule tags Transferase
source organism Solanum pimpinellifolium
molecule keywords Protein kinase
total genus 22
structure length 77
sequence length 77
chains with identical sequence F, G, H
ec nomenclature ec 6.3.2.-:
pdb deposition date 2009-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.110 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3hgkE00
3TJYA 3SVIA 3HGLA 3HGKE
chains in the Genus database with same CATH superfamily
4FJHA 3N1EA 3OGKB 4DTPA 4HCCA 2P1MB 4KHNA 4E3SA 1FZ8E 4J2EA 3SUPA 1XMHE 4FJKA 2P1QB 3C6PB 3QEWA 3K2OA 3CFOA 2B1EA 3J27A 4JS5A 4FJMA 3TAGA 4FJNA 4KI6A 4DTRA 2JHAA 4EYWA 3HP9A 4RNGA 4JS4A 4DTSA 3QETA 2JPNA 3SQ0A 3SNNA 1LDKE 2H4TA 3C95A 3RMBA 2OVQB 4DU3A 3SPZA 2PFTA 4KHUA 3SCXA 4EP9A 3L0MA 2P1OB 5H37A 4I9LA 2FYOA 3QERA 2JH8A 1NEXB 2RKHA 3S9HA 2YB5A 3NCIA 4FJ7A 3QEIA 2JHCA 4M3YA 4DTJA 3TAFA 4J2AA 1JW2A 4EPHA 4QNCA 3RMCA 2DY4A 1MMOG 4M3TA 3LD8A 2PFVA 3QNOA 3HL8A 1FZ4E 4I6JB 4IT5A 5IBKB 2OZSA 4B08A 1XVCE 2E32A 4HCBA 2LF6A 4AKIA 1N1CA 2P1NB 2VIXA 4GAMC 4JRPA 1CLQA 1XVGE 1FZ6E 3TAEA 1XU3E 3HGLA 4FJLA 4M3RA 1Q9XA 1MHYG 3NAEA 2RCUA 1P22A 2JQTA 3QEXA 4KHYA 1XMGE 2OVRB 3RWUA 4DU1A 2LF3A 2DEBA 3L2OB 3SI6A 4I9QA 4ADNA 1FZ5E 3NDKA 2DTUA 3UO3A 1FPOA 4DTOA 4KHQA 3SPYA 1FS1A 2K5SA 3KD1E 3CFRA 4J2DA 1XU5E 3E4YA 3QESA 3SVIA 2FW3A 4FVMA 3RMAA 5IREA 3SUQA 4KHSA 1FZ7E 3RMDA 4FK4A 4M3XA 3LDSA 3WSOA 3SUNA 3N1BA 2OYQA 3HGKE 3SQ1A 1FYZE 4JRQA 3TL8B 1XMFE 2P1PB 2MW2A 3J2PA 4DTMA 2HD0A 4E4BA 4DTUA 2E31A 4AKHA 4M3WA 1XVEE 3C94A 3L1NA 3TJYA 2B8IA 4DU4A 4X5NA 4DTNA 1FZ1E 1XVFE 3UIQA 4FJ8A 3OGLB 1MTYG 1FXXA 2JH9A 2MZWB 1WAFA 4QNDA 4X5MA 3NGIA 4J2BA 4M3UA 1IH7A 2OVPB 4FJ5A 3QEVA 2VJ4A 3C6NB 1FZ0E 3C6OB 3LDBA 3LZJA 1Q9YA 4ADOA 3E4WA 4FJIA 4FK2A 4M3ZA 1XVBE 4RG8A 3QEPA 1IG9A 4DTXA 4M45A 3SQ2A 4FJXA 1XL3C 2QXFA 4ICGC 3NHGA 4M41A 3L8BA 2OZMA 1FZ3E 1FZHE 2B7MA 4RL5A 4KHWA 5IZ7A 1WAJA 3BVOA 1FZ2E 1XVDE 3SJJA 3TABA 4FJ9A 3CFPA 3SUOA 4FJJA 2P5GA 2JHPA 3MKSB 4KI4A 3CQ8A 1FZ9E 2VJ5A 3SQ4A 2ATQA 3UO2A 3V7DB 1MHZG 3LZIA 3QNNA 2P5OA 3KD5E 4FJGA 4FK0A 4AI6A 3NE6A 2MMBA 4M42A 3OGMB 4AKGA 1FZIE
chains in the Genus database with same CATH topology
4FJHA 3N1EA 3OGKB 4DTPA 4HCCA 2P1MB 4KHNA 4E3SA 1FZ8E 4J2EA 3SUPA 1XMHE 4FJKA 2P1QB 3C6PB 3QEWA 3K2OA 3CFOA 2B1EA 3J27A 4JS5A 4FJMA 3TAGA 4FJNA 4KI6A 4DTRA 2JHAA 4EYWA 3HP9A 4RNGA 4JS4A 4DTSA 3QETA 2JPNA 3SQ0A 3SNNA 1LDKE 2H4TA 3C95A 3RMBA 2OVQB 4DU3A 3SPZA 2PFTA 4KHUA 3SCXA 4EP9A 3L0MA 2P1OB 5H37A 4I9LA 2FYOA 3QERA 2JH8A 1NEXB 3S9HA 2YB5A 3NCIA 4FJ7A 3QEIA 2JHCA 4M3YA 4DTJA 3TAFA 4J2AA 4EPHA 4QNCA 3RMCA 2DY4A 1MMOG 4M3TA 3LD8A 2PFVA 3QNOA 3HL8A 1FZ4E 4I6JB 5IBKB 2OZSA 4B08A 1XVCE 2E32A 4HCBA 2LF6A 4AKIA 2VIXA 2P1NB 4GAMC 4JRPA 1CLQA 1XVGE 1FZ6E 3TAEA 1XU3E 3HGLA 4FJLA 4M3RA 1Q9XA 1MHYG 3NAEA 2RCUA 1P22A 3QEXA 4KHYA 1XMGE 2OVRB 3RWUA 4DU1A 2LF3A 2DEBA 3L2OB 3SI6A 4I9QA 4ADNA 1FZ5E 3NDKA 2DTUA 4DTOA 4KHQA 3SPYA 1FS1A 3KD1E 3CFRA 4J2DA 1XU5E 3E4YA 3QESA 3SVIA 2FW3A 4FVMA 3RMAA 5IREA 3SUQA 4KHSA 1FZ7E 3RMDA 4FK4A 4M3XA 3LDSA 3WSOA 3SUNA 3N1BA 2OYQA 3HGKE 3SQ1A 1FYZE 4JRQA 3TL8B 1XMFE 2P1PB 3J2PA 4DTMA 2HD0A 4E4BA 4DTUA 2E31A 4AKHA 4M3WA 1XVEE 3C94A 3L1NA 3TJYA 2B8IA 4DU4A 4X5NA 4DTNA 1FZ1E 1XVFE 3UIQA 4FJ8A 3OGLB 1MTYG 1FXXA 2JH9A 2MZWB 1WAFA 4QNDA 4X5MA 3NGIA 4J2BA 4M3UA 1IH7A 2OVPB 4FJ5A 3QEVA 2VJ4A 3C6NB 3C6OB 1FZ0E 3LDBA 3LZJA 1Q9YA 4ADOA 3E4WA 4FJIA 4FK2A 4M3ZA 1XVBE 4RG8A 3QEPA 1IG9A 4DTXA 4M45A 3SQ2A 4FJXA 1XL3C 2QXFA 3NHGA 4M41A 3L8BA 2OZMA 1FZ3E 1FZHE 2B7MA 4RL5A 4KHWA 5IZ7A 1WAJA 1FZ2E 1XVDE 3SJJA 3TABA 4FJ9A 3CFPA 3SUOA 4FJJA 2P5GA 2JHPA 3MKSB 4KI4A 3CQ8A 1FZ9E 2VJ5A 3SQ4A 2ATQA 3V7DB 3LZIA 1MHZG 3KD5E 3QNNA 2P5OA 4FJGA 4FK0A 4AI6A 3NE6A 2MMBA 4M42A 3OGMB 4AKGA 1FZIE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TJY A;  3SVI A;  3HGL A;  3HGK E; 
#chains in the Genus database with same CATH topology
 4FJH A;  3N1E A;  3OGK B;  4DTP A;  4HCC A;  2P1M B;  4KHN A;  4E3S A;  1FZ8 E;  4J2E A;  3SUP A;  1XMH E;  4FJK A;  2P1Q B;  3C6P B;  3QEW A;  3K2O A;  3CFO A;  2B1E A;  3J27 A;  4JS5 A;  4FJM A;  3TAG A;  4FJN A;  4KI6 A;  4DTR A;  2JHA A;  4EYW A;  3HP9 A;  4RNG A;  4JS4 A;  4DTS A;  3QET A;  2JPN A;  3SQ0 A;  3SNN A;  1LDK E;  2H4T A;  3C95 A;  3RMB A;  2OVQ B;  4DU3 A;  3SPZ A;  2PFT A;  4KHU A;  3SCX A;  4EP9 A;  3L0M A;  2P1O B;  5H37 A;  4I9L A;  2FYO A;  3QER A;  2JH8 A;  1NEX B;  2RKH A;  3S9H A;  2YB5 A;  3NCI A;  4FJ7 A;  3QEI A;  2JHC A;  4M3Y A;  4DTJ A;  3TAF A;  4J2A A;  1JW2 A;  4EPH A;  4QNC A;  3RMC A;  2DY4 A;  1MMO G;  4M3T A;  3LD8 A;  2PFV A;  3QNO A;  3HL8 A;  1FZ4 E;  4I6J B;  4IT5 A;  5IBK B;  2OZS A;  4B08 A;  1XVC E;  2E32 A;  4HCB A;  2LF6 A;  4AKI A;  1N1C A;  2P1N B;  2VIX A;  4GAM C;  4JRP A;  1CLQ A;  1XVG E;  1FZ6 E;  3TAE A;  1XU3 E;  3HGL A;  4FJL A;  4M3R A;  1Q9X A;  1MHY G;  3NAE A;  2RCU A;  1P22 A;  2JQT A;  3QEX A;  4KHY A;  1XMG E;  2OVR B;  3RWU A;  4DU1 A;  2LF3 A;  2DEB A;  3L2O B;  3SI6 A;  4I9Q A;  4ADN A;  1FZ5 E;  3NDK A;  2DTU A;  3UO3 A;  1FPO A;  4DTO A;  4KHQ A;  3SPY A;  1FS1 A;  2K5S A;  3KD1 E;  3CFR A;  4J2D A;  1XU5 E;  3E4Y A;  3QES A;  3SVI A;  2FW3 A;  4FVM A;  3RMA A;  5IRE A;  3SUQ A;  4KHS A;  1FZ7 E;  3RMD A;  4FK4 A;  4M3X A;  3LDS A;  3WSO A;  3SUN A;  3N1B A;  2OYQ A;  3HGK E;  3SQ1 A;  1FYZ E;  4JRQ A;  3TL8 B;  1XMF E;  2P1P B;  2MW2 A;  3J2P A;  4DTM A;  2HD0 A;  4E4B A;  4DTU A;  2E31 A;  4AKH A;  4M3W A;  1XVE E;  3C94 A;  3L1N A;  3TJY A;  2B8I A;  4DU4 A;  4X5N A;  4DTN A;  1FZ1 E;  1XVF E;  3UIQ A;  4FJ8 A;  3OGL B;  1MTY G;  1FXX A;  2JH9 A;  2MZW B;  1WAF A;  4QND A;  4X5M A;  3NGI A;  4J2B A;  4M3U A;  1IH7 A;  2OVP B;  4FJ5 A;  3QEV A;  2VJ4 A;  3C6N B;  1FZ0 E;  3C6O B;  3LDB A;  3LZJ A;  1Q9Y A;  4ADO A;  3E4W A;  4FJI A;  4FK2 A;  4M3Z A;  1XVB E;  4RG8 A;  3QEP A;  1IG9 A;  4DTX A;  4M45 A;  3SQ2 A;  4FJX A;  1XL3 C;  2QXF A;  4ICG C;  3NHG A;  4M41 A;  3L8B A;  2OZM A;  1FZ3 E;  1FZH E;  2B7M A;  4RL5 A;  4KHW A;  5IZ7 A;  1WAJ A;  3BVO A;  1FZ2 E;  1XVD E;  3SJJ A;  3TAB A;  4FJ9 A;  3CFP A;  3SUO A;  4FJJ A;  2P5G A;  2JHP A;  3MKS B;  4KI4 A;  3CQ8 A;  1FZ9 E;  2VJ5 A;  3SQ4 A;  2ATQ A;  3UO2 A;  3V7D B;  1MHZ G;  3LZI A;  3QNN A;  2P5O A;  3KD5 E;  4FJG A;  4FK0 A;  4AI6 A;  3NE6 A;  2MMB A;  4M42 A;  3OGM B;  4AKG A;  1FZI E; 
#chains in the Genus database with same CATH homology
 4FJH A;  3N1E A;  3OGK B;  4DTP A;  4HCC A;  2P1M B;  4KHN A;  4E3S A;  1FZ8 E;  4J2E A;  3SUP A;  1XMH E;  4FJK A;  2P1Q B;  3C6P B;  3QEW A;  3K2O A;  3CFO A;  2B1E A;  3J27 A;  4JS5 A;  4FJM A;  3TAG A;  4FJN A;  4KI6 A;  4DTR A;  2JHA A;  4EYW A;  3HP9 A;  4RNG A;  4JS4 A;  4DTS A;  3QET A;  2JPN A;  3SQ0 A;  3SNN A;  1LDK E;  2H4T A;  3C95 A;  3RMB A;  2OVQ B;  4DU3 A;  3SPZ A;  2PFT A;  4KHU A;  3SCX A;  4EP9 A;  3L0M A;  2P1O B;  5H37 A;  4I9L A;  2FYO A;  3QER A;  2JH8 A;  1NEX B;  3S9H A;  2YB5 A;  3NCI A;  4FJ7 A;  3QEI A;  2JHC A;  4M3Y A;  4DTJ A;  3TAF A;  4J2A A;  4EPH A;  4QNC A;  3RMC A;  2DY4 A;  1MMO G;  4M3T A;  3LD8 A;  2PFV A;  3QNO A;  3HL8 A;  1FZ4 E;  4I6J B;  5IBK B;  2OZS A;  4B08 A;  1XVC E;  2E32 A;  4HCB A;  2LF6 A;  4AKI A;  2VIX A;  2P1N B;  4GAM C;  4JRP A;  1CLQ A;  1XVG E;  1FZ6 E;  3TAE A;  1XU3 E;  3HGL A;  4FJL A;  4M3R A;  1Q9X A;  1MHY G;  3NAE A;  2RCU A;  1P22 A;  3QEX A;  4KHY A;  1XMG E;  2OVR B;  3RWU A;  4DU1 A;  2LF3 A;  2DEB A;  3L2O B;  3SI6 A;  4I9Q A;  4ADN A;  1FZ5 E;  3NDK A;  2DTU A;  4DTO A;  4KHQ A;  3SPY A;  1FS1 A;  3KD1 E;  3CFR A;  4J2D A;  1XU5 E;  3E4Y A;  3QES A;  3SVI A;  2FW3 A;  4FVM A;  3RMA A;  5IRE A;  3SUQ A;  4KHS A;  1FZ7 E;  3RMD A;  4FK4 A;  4M3X A;  3LDS A;  3WSO A;  3SUN A;  3N1B A;  2OYQ A;  3HGK E;  3SQ1 A;  1FYZ E;  4JRQ A;  3TL8 B;  1XMF E;  2P1P B;  3J2P A;  4DTM A;  2HD0 A;  4E4B A;  4DTU A;  2E31 A;  4AKH A;  4M3W A;  1XVE E;  3C94 A;  3L1N A;  3TJY A;  2B8I A;  4DU4 A;  4X5N A;  4DTN A;  1FZ1 E;  1XVF E;  3UIQ A;  4FJ8 A;  3OGL B;  1MTY G;  1FXX A;  2JH9 A;  2MZW B;  1WAF A;  4QND A;  4X5M A;  3NGI A;  4J2B A;  4M3U A;  1IH7 A;  2OVP B;  4FJ5 A;  3QEV A;  2VJ4 A;  3C6N B;  3C6O B;  1FZ0 E;  3LDB A;  3LZJ A;  1Q9Y A;  4ADO A;  3E4W A;  4FJI A;  4FK2 A;  4M3Z A;  1XVB E;  4RG8 A;  3QEP A;  1IG9 A;  4DTX A;  4M45 A;  3SQ2 A;  4FJX A;  1XL3 C;  2QXF A;  3NHG A;  4M41 A;  3L8B A;  2OZM A;  1FZ3 E;  1FZH E;  2B7M A;  4RL5 A;  4KHW A;  5IZ7 A;  1WAJ A;  1FZ2 E;  1XVD E;  3SJJ A;  3TAB A;  4FJ9 A;  3CFP A;  3SUO A;  4FJJ A;  2P5G A;  2JHP A;  3MKS B;  4KI4 A;  3CQ8 A;  1FZ9 E;  2VJ5 A;  3SQ4 A;  2ATQ A;  3V7D B;  3LZI A;  1MHZ G;  3KD5 E;  3QNN A;  2P5O A;  4FJG A;  4FK0 A;  4AI6 A;  3NE6 A;  2MMB A;  4M42 A;  3OGM B;  4AKG A;  1FZI E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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