5IBKB

Skp1-f-box in complex with a ubiquitin variant
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
46
structure length
46
Chain Sequence
QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
source organism Homo sapiens
publication title Inhibition of SCF ubiquitin ligases by engineered ubiquitin variants that target the Cul1 binding site on the Skp1-F-box interface.
pubmed doi rcsb
molecule keywords S-phase kinase-associated protein 1,S-phase kinase-associate
total genus 15
structure length 46
sequence length 46
chains with identical sequence E
ec nomenclature
pdb deposition date 2016-02-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 5ibkB00
3WSOA 1FS1A 2P1QB 2P1MB 3L2OB 4I6JB 2P1NB 2OVPB 1P22A 2P1PB 3MKSB 2OVQB 3V7DB 2OVRB 3C6PB 2E31A 2E32A 5IBKB 3C6NB 1LDKE 1NEXB 3C6OB 3OGKB 3OGMB 3OGLB 2P1OB
chains in the Genus database with same CATH superfamily
2P1QB 2P1MB 3QERA 1XU5E 4M3TA 3L2OB 2P1NB 3QEWA 4FK0A 3NDKA 4EP9A 1FYZE 1IG9A 4FJGA 1XVFE 4FJXA 4I9LA 3HL8A 3SUPA 4M3WA 2LF6A 3SVIA 4J2AA 1MMOG 2PFTA 4ADOA 4QNCA 3NHGA 2E32A 3TJYA 1XU3E 4EYWA 3SQ1A 3SNNA 3CFOA 1FZ8E 4KHQA 4M3XA 1WAFA 3NE6A 3L1NA 3TAEA 3C6NB 4KHSA 1FZHE 3SQ2A 4E4BA 4FJKA 4FJ7A 4FJNA 4M3YA 4DTNA 2ATQA 3BVOA 4GAMC 4QNDA 4E3SA 3TABA 3RWUA 1XVGE 2QXFA 2OZMA 2P1OB 4KHWA 1FS1A 2H4TA 1XMGE 2DY4A 4KI4A 3TL8B 3QETA 3SJJA 4JS4A 3QESA 2B8IA 2YB5A 2OVPB 2JHPA 4RG8A 3SQ0A 1FZ5E 4KHYA 3RMCA 3L0MA 1FZ4E 1FZIE 3SI6A 1Q9YA 1XVDE 2P1PB 3MKSB 2JHAA 4RNGA 4X5MA 3CFRA 1MTYG 3KD1E 4B08A 4FJJA 4DTOA 3C95A 5IBKB 1MHYG 4RL5A 4J2EA 1XMHE 2RCUA 3N1BA 4DU3A 1LDKE 3HGLA 3C6OB 2P5OA 2LF3A 4FK2A 1FZ6E 1CLQA 1WAJA 2PFVA 2JQTA 4AKHA 1FXXA 2JH8A 3LZIA 1XL3C 4I9QA 4EPHA 4M41A 1N1CA 3UO3A 3LDSA 1FPOA 3WSOA 3NAEA 4FVMA 3S9HA 4DU4A 2K5SA 3TAFA 3SUNA 4M42A 3J2PA 1FZ9E 4I6JB 4DTJA 3TAGA 4FK4A 2VIXA 3LZJA 3RMBA 3QEPA 2VJ4A 1IH7A 3CFPA 4ICGC 4IT5A 3L8BA 4DTXA 2MZWB 2MMBA 3V7DB 3NCIA 4DU1A 4DTRA 3E4WA 4DTUA 2FW3A 3UO2A 2B7MA 2E31A 3KD5E 3SQ4A 4AI6A 1Q9XA 3HGKE 4J2BA 1NEXB 4FJ5A 4HCBA 4AKIA 2DEBA 3E4YA 1XVEE 3OGKB 4JRQA 4JRPA 3SUOA 4M45A 4AKGA 3QEXA 3J27A 4FJHA 3OGLB 2RKHA 5IREA 4J2DA 4JS5A 4KI6A 4FJ9A 3QNOA 3QNNA 1FZ7E 2OZSA 2DTUA 4DTMA 3SUQA 2JH9A 4X5NA 1FZ3E 3LD8A 1JW2A 4FJLA 5H37A 3C94A 4M3RA 3RMDA 2P5GA 3LDBA 3NGIA 1P22A 1XMFE 4M3ZA 2HD0A 4DTPA 1FZ2E 2MW2A 2OVQB 3K2OA 3SPYA 2OVRB 3C6PB 3CQ8A 3SPZA 4FJIA 1MHZG 2B1EA 4FJMA 2OYQA 2JPNA 3SCXA 4KHUA 4KHNA 3RMAA 1XVBE 4ADNA 2JHCA 1FZ0E 4FJ8A 2VJ5A 3QEVA 4M3UA 2FYOA 4DTSA 3OGMB 3QEIA 5IZ7A 1FZ1E 3HP9A 3UIQA 4HCCA 3N1EA 1XVCE
chains in the Genus database with same CATH topology
2P1QB 2P1MB 3QERA 1XU5E 4M3TA 3L2OB 2P1NB 3QEWA 4FK0A 3NDKA 4EP9A 1FYZE 1IG9A 4FJGA 1XVFE 4FJXA 4I9LA 3HL8A 3SUPA 4M3WA 2LF6A 3SVIA 4J2AA 1MMOG 2PFTA 4ADOA 4QNCA 3NHGA 2E32A 3TJYA 1XU3E 4EYWA 3SQ1A 3SNNA 3CFOA 1FZ8E 4KHQA 4M3XA 1WAFA 3NE6A 3L1NA 3TAEA 3C6NB 4KHSA 1FZHE 3SQ2A 4E4BA 4FJKA 4FJNA 4M3YA 4DTNA 2ATQA 4GAMC 4QNDA 4E3SA 3RWUA 3TABA 1XVGE 2QXFA 2OZMA 2P1OB 4KHWA 1FS1A 2H4TA 1XMGE 2DY4A 4KI4A 3TL8B 3QETA 3SJJA 4JS4A 3QESA 2B8IA 2YB5A 2OVPB 2JHPA 4RG8A 3SQ0A 1FZ5E 4KHYA 3RMCA 3L0MA 1FZ4E 1FZIE 3SI6A 1Q9YA 1XVDE 2P1PB 3MKSB 2JHAA 4RNGA 4X5MA 3CFRA 1MTYG 3KD1E 4B08A 4FJJA 4DTOA 3C95A 5IBKB 1MHYG 4RL5A 4J2EA 1XMHE 2RCUA 3N1BA 4DU3A 1LDKE 3HGLA 3C6OB 2P5OA 2LF3A 4FK2A 1FZ6E 1CLQA 1WAJA 2PFVA 4AKHA 1FXXA 2JH8A 3LZIA 1XL3C 4I9QA 4EPHA 4M41A 3LDSA 3WSOA 3NAEA 4FVMA 3S9HA 4DU4A 3TAFA 3SUNA 4M42A 3J2PA 1FZ9E 4I6JB 4DTJA 3TAGA 4FK4A 2VIXA 3LZJA 3RMBA 3QEPA 2VJ4A 1IH7A 3CFPA 4DTRA 3L8BA 4DTXA 4FJMA 2MZWB 2MMBA 3V7DB 3NCIA 4DU1A 4FJ7A 3E4WA 4DTUA 2FW3A 3KD5E 2B7MA 2E31A 3SQ4A 4AI6A 1Q9XA 3HGKE 4J2BA 1NEXB 4FJ5A 4HCBA 4AKIA 2DEBA 3E4YA 1XVEE 3OGKB 4JRQA 4JRPA 3SUOA 4M45A 4AKGA 3QEXA 3J27A 4FJHA 3OGLB 5IREA 4J2DA 4JS5A 4KI6A 4FJ9A 3QNOA 3QNNA 1FZ7E 2OZSA 2DTUA 4DTMA 3SUQA 2JH9A 4X5NA 1FZ3E 3LD8A 4FJLA 5H37A 3C94A 4M3RA 3RMDA 2P5GA 3LDBA 3NGIA 1P22A 1XMFE 4M3ZA 2HD0A 4DTPA 1FZ2E 2OVQB 3SPZA 3K2OA 3SPYA 2OVRB 3C6PB 3CQ8A 4FJIA 1MHZG 2B1EA 2OYQA 2JPNA 3SCXA 4KHUA 4KHNA 3RMAA 1XVBE 4ADNA 2JHCA 1FZ0E 4FJ8A 2VJ5A 3QEVA 4M3UA 2FYOA 4DTSA 3OGMB 3QEIA 5IZ7A 1FZ1E 3HP9A 3UIQA 4HCCA 3N1EA 1XVCE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WSO A;  1FS1 A;  2P1Q B;  2P1M B;  3L2O B;  4I6J B;  2P1N B;  2OVP B;  1P22 A;  2P1P B;  3MKS B;  2OVQ B;  3V7D B;  2OVR B;  3C6P B;  2E31 A;  2E32 A;  5IBK B;  3C6N B;  1LDK E;  1NEX B;  3C6O B;  3OGK B;  3OGM B;  3OGL B;  2P1O B; 
#chains in the Genus database with same CATH topology
 2P1Q B;  2P1M B;  3QER A;  1XU5 E;  4M3T A;  3L2O B;  2P1N B;  3QEW A;  4FK0 A;  3NDK A;  4EP9 A;  1FYZ E;  1IG9 A;  4FJG A;  1XVF E;  4FJX A;  4I9L A;  3HL8 A;  3SUP A;  4M3W A;  2LF6 A;  3SVI A;  4J2A A;  1MMO G;  2PFT A;  4ADO A;  4QNC A;  3NHG A;  2E32 A;  3TJY A;  1XU3 E;  4EYW A;  3SQ1 A;  3SNN A;  3CFO A;  1FZ8 E;  4KHQ A;  4M3X A;  1WAF A;  3NE6 A;  3L1N A;  3TAE A;  3C6N B;  4KHS A;  1FZH E;  3SQ2 A;  4E4B A;  4FJK A;  4FJ7 A;  4FJN A;  4M3Y A;  4DTN A;  2ATQ A;  3BVO A;  4GAM C;  4QND A;  4E3S A;  3TAB A;  3RWU A;  1XVG E;  2QXF A;  2OZM A;  2P1O B;  4KHW A;  1FS1 A;  2H4T A;  1XMG E;  2DY4 A;  4KI4 A;  3TL8 B;  3QET A;  3SJJ A;  4JS4 A;  3QES A;  2B8I A;  2YB5 A;  2OVP B;  2JHP A;  4RG8 A;  3SQ0 A;  1FZ5 E;  4KHY A;  3RMC A;  3L0M A;  1FZ4 E;  1FZI E;  3SI6 A;  1Q9Y A;  1XVD E;  2P1P B;  3MKS B;  2JHA A;  4RNG A;  4X5M A;  3CFR A;  1MTY G;  3KD1 E;  4B08 A;  4FJJ A;  4DTO A;  3C95 A;  5IBK B;  1MHY G;  4RL5 A;  4J2E A;  1XMH E;  2RCU A;  3N1B A;  4DU3 A;  1LDK E;  3HGL A;  3C6O B;  2P5O A;  2LF3 A;  4FK2 A;  1FZ6 E;  1CLQ A;  1WAJ A;  2PFV A;  2JQT A;  4AKH A;  1FXX A;  2JH8 A;  3LZI A;  1XL3 C;  4I9Q A;  4EPH A;  4M41 A;  1N1C A;  3UO3 A;  3LDS A;  1FPO A;  3WSO A;  3NAE A;  4FVM A;  3S9H A;  4DU4 A;  2K5S A;  3TAF A;  3SUN A;  4M42 A;  3J2P A;  1FZ9 E;  4I6J B;  4DTJ A;  3TAG A;  4FK4 A;  2VIX A;  3LZJ A;  3RMB A;  3QEP A;  2VJ4 A;  1IH7 A;  3CFP A;  4ICG C;  4IT5 A;  3L8B A;  4DTX A;  2MZW B;  2MMB A;  3V7D B;  3NCI A;  4DU1 A;  4DTR A;  3E4W A;  4DTU A;  2FW3 A;  3UO2 A;  2B7M A;  2E31 A;  3KD5 E;  3SQ4 A;  4AI6 A;  1Q9X A;  3HGK E;  4J2B A;  1NEX B;  4FJ5 A;  4HCB A;  4AKI A;  2DEB A;  3E4Y A;  1XVE E;  3OGK B;  4JRQ A;  4JRP A;  3SUO A;  4M45 A;  4AKG A;  3QEX A;  3J27 A;  4FJH A;  3OGL B;  2RKH A;  5IRE A;  4J2D A;  4JS5 A;  4KI6 A;  4FJ9 A;  3QNO A;  3QNN A;  1FZ7 E;  2OZS A;  2DTU A;  4DTM A;  3SUQ A;  2JH9 A;  4X5N A;  1FZ3 E;  3LD8 A;  1JW2 A;  4FJL A;  5H37 A;  3C94 A;  4M3R A;  3RMD A;  2P5G A;  3LDB A;  3NGI A;  1P22 A;  1XMF E;  4M3Z A;  2HD0 A;  4DTP A;  1FZ2 E;  2MW2 A;  2OVQ B;  3K2O A;  3SPY A;  2OVR B;  3C6P B;  3CQ8 A;  3SPZ A;  4FJI A;  1MHZ G;  2B1E A;  4FJM A;  2OYQ A;  2JPN A;  3SCX A;  4KHU A;  4KHN A;  3RMA A;  1XVB E;  4ADN A;  2JHC A;  1FZ0 E;  4FJ8 A;  2VJ5 A;  3QEV A;  4M3U A;  2FYO A;  4DTS A;  3OGM B;  3QEI A;  5IZ7 A;  1FZ1 E;  3HP9 A;  3UIQ A;  4HCC A;  3N1E A;  1XVC E; 
#chains in the Genus database with same CATH homology
 2P1Q B;  2P1M B;  3QER A;  1XU5 E;  4M3T A;  3L2O B;  2P1N B;  3QEW A;  4FK0 A;  3NDK A;  4EP9 A;  1FYZ E;  1IG9 A;  4FJG A;  1XVF E;  4FJX A;  4I9L A;  3HL8 A;  3SUP A;  4M3W A;  2LF6 A;  3SVI A;  4J2A A;  1MMO G;  2PFT A;  4ADO A;  4QNC A;  3NHG A;  2E32 A;  3TJY A;  1XU3 E;  4EYW A;  3SQ1 A;  3SNN A;  3CFO A;  1FZ8 E;  4KHQ A;  4M3X A;  1WAF A;  3NE6 A;  3L1N A;  3TAE A;  3C6N B;  4KHS A;  1FZH E;  3SQ2 A;  4E4B A;  4FJK A;  4FJN A;  4M3Y A;  4DTN A;  2ATQ A;  4GAM C;  4QND A;  4E3S A;  3RWU A;  3TAB A;  1XVG E;  2QXF A;  2OZM A;  2P1O B;  4KHW A;  1FS1 A;  2H4T A;  1XMG E;  2DY4 A;  4KI4 A;  3TL8 B;  3QET A;  3SJJ A;  4JS4 A;  3QES A;  2B8I A;  2YB5 A;  2OVP B;  2JHP A;  4RG8 A;  3SQ0 A;  1FZ5 E;  4KHY A;  3RMC A;  3L0M A;  1FZ4 E;  1FZI E;  3SI6 A;  1Q9Y A;  1XVD E;  2P1P B;  3MKS B;  2JHA A;  4RNG A;  4X5M A;  3CFR A;  1MTY G;  3KD1 E;  4B08 A;  4FJJ A;  4DTO A;  3C95 A;  5IBK B;  1MHY G;  4RL5 A;  4J2E A;  1XMH E;  2RCU A;  3N1B A;  4DU3 A;  1LDK E;  3HGL A;  3C6O B;  2P5O A;  2LF3 A;  4FK2 A;  1FZ6 E;  1CLQ A;  1WAJ A;  2PFV A;  4AKH A;  1FXX A;  2JH8 A;  3LZI A;  1XL3 C;  4I9Q A;  4EPH A;  4M41 A;  3LDS A;  3WSO A;  3NAE A;  4FVM A;  3S9H A;  4DU4 A;  3TAF A;  3SUN A;  4M42 A;  3J2P A;  1FZ9 E;  4I6J B;  4DTJ A;  3TAG A;  4FK4 A;  2VIX A;  3LZJ A;  3RMB A;  3QEP A;  2VJ4 A;  1IH7 A;  3CFP A;  4DTR A;  3L8B A;  4DTX A;  4FJM A;  2MZW B;  2MMB A;  3V7D B;  3NCI A;  4DU1 A;  4FJ7 A;  3E4W A;  4DTU A;  2FW3 A;  3KD5 E;  2B7M A;  2E31 A;  3SQ4 A;  4AI6 A;  1Q9X A;  3HGK E;  4J2B A;  1NEX B;  4FJ5 A;  4HCB A;  4AKI A;  2DEB A;  3E4Y A;  1XVE E;  3OGK B;  4JRQ A;  4JRP A;  3SUO A;  4M45 A;  4AKG A;  3QEX A;  3J27 A;  4FJH A;  3OGL B;  5IRE A;  4J2D A;  4JS5 A;  4KI6 A;  4FJ9 A;  3QNO A;  3QNN A;  1FZ7 E;  2OZS A;  2DTU A;  4DTM A;  3SUQ A;  2JH9 A;  4X5N A;  1FZ3 E;  3LD8 A;  4FJL A;  5H37 A;  3C94 A;  4M3R A;  3RMD A;  2P5G A;  3LDB A;  3NGI A;  1P22 A;  1XMF E;  4M3Z A;  2HD0 A;  4DTP A;  1FZ2 E;  2OVQ B;  3SPZ A;  3K2O A;  3SPY A;  2OVR B;  3C6P B;  3CQ8 A;  4FJI A;  1MHZ G;  2B1E A;  2OYQ A;  2JPN A;  3SCX A;  4KHU A;  4KHN A;  3RMA A;  1XVB E;  4ADN A;  2JHC A;  1FZ0 E;  4FJ8 A;  2VJ5 A;  3QEV A;  4M3U A;  2FYO A;  4DTS A;  3OGM B;  3QEI A;  5IZ7 A;  1FZ1 E;  3HP9 A;  3UIQ A;  4HCC A;  3N1E A;  1XVC E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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