1XL7A

Crystal structure of mouse carnitine octanoyltransferase
Total Genus 206
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
206
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
molecule tags Transferase
source organism Mus musculus
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 206
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl7A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl7A03
4G22A 1XMCA 1DPCA 1XL7A 3U9BA 2BGHA 2RKVA 1Q23A 4KECA 3U9FA 2VSQA 4JN5A 2II5A 3CLAA 4N72A 5KJTA 3B30A 4CLAA 2II4A 2JGPA 2XHGA 2E1VA 1NOCB 1L5AA 5KJWA 4KE4A 1EAEA 1Q9JA 2CLAA 1XL8A 2E1TA 3FP0A 5FALA 1DPBA 1E2OA 3B2SA 2IHWA 5DU9A 1DPDA 1SCZA 1EABA 2E1UA 3L60A 5KJVA 5KJUA 1C4TA 2XR7A 5FANA 5KJSA 4G2MA 2I9DA 2RKTA 1EADA 4HVMA 1QCAA 2ZBAA 1CLAA 5T3EA 1EACA 4G0BA 1XMDA 2II3A 3FOTA 1CIAA 1EAAA 3MAEA 4JN3A 1EAFA 5DUAA 1PD5A
chains in the Genus database with same CATH superfamily
4APAA 1DPCA 3R6VA 2VSQA 2II5A 1AUWA 1YISA 3U9BA 2RJRA 4EPHA 5EYVA 1GKJA 4KE4A 2VL7A 4EEIA 3FP0A 1DOFA 3CZOA 1TJWA 1FUPA 4NLEA 1DPBA 1E2OA 2DEBA 2E1UA 1EABA 3NO9A 2J91A 2XR7A 5FANA 1XMDA 2YIIA 1NDIA 2E9FA 2PTRA 3R6QA 2H3PA 1CIAA 1EAAA 3CRVA 3FOTA 2PTQA 3MAEA 4JN3A 3NZ4A 1Y2MA 4BAAA 3RD8A 4ADLA 1FUOA 1XMCA 2BGHA 1HY1A 1FUQA 1B8FA 4CLAA 4A15A 3OCEA 1U16A 4EP9A 1I0AA 1S5OA 1NOCB 2PFMA 1L5AA 4NSLA 4FFXA 1EAEA 2NYNA 4C5UA 2RCUA 1RE5A 1GKMA 1YFMA 1HY0A 1T1UA 2O78A 3KDYA 3OCFA 3L60A 3C8TA 3BHGA 2FY4A 2FW3A 1YFEA 4V2QA 2OHYA 1EADA 1DCNA 2ZBAA 1CLAA 1EACA 4MX2A 1Q5NA 2H3UA 2VD6A 2CLAA 5DUAA 1PD5A 2FY2A 1Q6XA 1XL7A 1K7WA 2RKVA 3U9FA 4JN5A 3R6YA 3CLAA 4N72A 5KJTA 1FURA 5H8WA 2XHGA 2PTSA 2E1VA 2FY3A 4EFCA 1T6PA 5F92A 2E1TA 5FALA 1GK3A 2O7EA 1U15A 2IHWA 4V2RA 4ADMA 1DPDA 1SCZA 5KJUA 5KJVA 1C4TA 2VSFA 1NDBA 1NM8A 4C6GA 1T7QA 1T7NA 4G2MA 2RKTA 2FY5A 4HVMA 1QCAA 1T6JA 5F91A 1JSWA 2O7BA 1EAFA 1W27A 5EYTA 5KJSA 4G22A 2O6YA 3GTDA 3E04A 1KQ7A 1TJUA 4HGVA 1TJ7A 2O7FA 3CRW1 3KDZA 4APBA 2RJSA 5HW2A 1Q23A 2O7DA 4C5RA 3B30A 4KECA 2NYFA 4C5SA 4BABA 3GZHA 2II4A 1GK2A 1C3CA 2X75A 2JGPA 1C3UA 5KJWA 4EYWA 1Q9JA 1K62A 1XL8A 4CQ5A 5D6BA 3RRPA 2H3WA 3B2SA 5DU9A 2FYOA 2QGAB 2QVEA 1EB4A 1TJVA 3QBPA 3TV2A 2I9DA 2HVGA 2FUSA 2H4TA 5T3EA 4G0BA 1NDFA 3UNVA 1J3UA 2II3A 1XWOA 1T7OA 4FLCA 1VDKA
chains in the Genus database with same CATH topology
1DPCA 2VSQA 2II5A 4KE4A 2VL7A 3FP0A 4NLEA 1DPBA 1E2OA 2E1UA 1EABA 2XR7A 5FANA 1XMDA 2E9FA 3FOTA 1CIAA 1EAAA 3CRVA 3MAEA 4JN3A 1XMCA 2BGHA 4CLAA 4A15A 1NOCB 1L5AA 1EAEA 3L60A 1EADA 2ZBAA 1CLAA 1EACA 2CLAA 5DUAA 1PD5A 1XL7A 2RKVA 3U9FA 4JN5A 3CLAA 4N72A 5KJTA 5H8WA 2XHGA 2E1VA 2E1TA 5FALA 2IHWA 1DPDA 1SCZA 5KJUA 5KJVA 1C4TA 2VSFA 4G2MA 2RKTA 4HVMA 1QCAA 1EAFA 5KJSA 4G22A 3U9BA 4KECA 1Q23A 3CRW1 3B30A 2II4A 2JGPA 5KJWA 1Q9JA 1XL8A 3B2SA 5DU9A 2I9DA 5T3EA 4G0BA 2II3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G22 A;  1XMC A;  1DPC A;  1XL7 A;  3U9B A;  2BGH A;  2RKV A;  1Q23 A;  4KEC A;  3U9F A;  2VSQ A;  4JN5 A;  2II5 A;  3CLA A;  4N72 A;  5KJT A;  3B30 A;  4CLA A;  2II4 A;  2JGP A;  2XHG A;  2E1V A;  1NOC B;  1L5A A;  5KJW A;  4KE4 A;  1EAE A;  1Q9J A;  2CLA A;  1XL8 A;  2E1T A;  3FP0 A;  5FAL A;  1DPB A;  1E2O A;  3B2S A;  2IHW A;  5DU9 A;  1DPD A;  1SCZ A;  1EAB A;  2E1U A;  3L60 A;  5KJV A;  5KJU A;  1C4T A;  2XR7 A;  5FAN A;  5KJS A;  4G2M A;  2I9D A;  2RKT A;  1EAD A;  4HVM A;  1QCA A;  2ZBA A;  1CLA A;  5T3E A;  1EAC A;  4G0B A;  1XMD A;  2II3 A;  3FOT A;  1CIA A;  1EAA A;  3MAE A;  4JN3 A;  1EAF A;  5DUA A;  1PD5 A; 
#chains in the Genus database with same CATH topology
 4APA A;  1DPC A;  3R6V A;  2VSQ A;  2II5 A;  1AUW A;  1YIS A;  3U9B A;  2RJR A;  4EPH A;  5EYV A;  1GKJ A;  4KE4 A;  2VL7 A;  4EEI A;  3FP0 A;  1DOF A;  3CZO A;  1TJW A;  1FUP A;  4NLE A;  1DPB A;  1E2O A;  2DEB A;  2E1U A;  1EAB A;  3NO9 A;  2J91 A;  2XR7 A;  5FAN A;  1XMD A;  2YII A;  1NDI A;  2E9F A;  2PTR A;  3R6Q A;  2H3P A;  1CIA A;  1EAA A;  3CRV A;  3FOT A;  2PTQ A;  3MAE A;  4JN3 A;  3NZ4 A;  1Y2M A;  4BAA A;  3RD8 A;  4ADL A;  1FUO A;  1XMC A;  2BGH A;  1HY1 A;  1FUQ A;  1B8F A;  4CLA A;  4A15 A;  3OCE A;  1U16 A;  4EP9 A;  1I0A A;  1S5O A;  1NOC B;  2PFM A;  1L5A A;  4NSL A;  4FFX A;  1EAE A;  2NYN A;  4C5U A;  2RCU A;  1RE5 A;  1GKM A;  1YFM A;  1HY0 A;  1T1U A;  2O78 A;  3KDY A;  3OCF A;  3L60 A;  3C8T A;  3BHG A;  2FY4 A;  2FW3 A;  1YFE A;  4V2Q A;  2OHY A;  1EAD A;  1DCN A;  2ZBA A;  1CLA A;  1EAC A;  4MX2 A;  1Q5N A;  2H3U A;  2VD6 A;  2CLA A;  5DUA A;  1PD5 A;  2FY2 A;  1Q6X A;  1XL7 A;  1K7W A;  2RKV A;  3U9F A;  4JN5 A;  3R6Y A;  3CLA A;  4N72 A;  5KJT A;  1FUR A;  5H8W A;  2XHG A;  2PTS A;  2E1V A;  2FY3 A;  4EFC A;  1T6P A;  5F92 A;  2E1T A;  5FAL A;  1GK3 A;  2O7E A;  1U15 A;  2IHW A;  4V2R A;  4ADM A;  1DPD A;  1SCZ A;  5KJU A;  5KJV A;  1C4T A;  2VSF A;  1NDB A;  1NM8 A;  4C6G A;  1T7Q A;  1T7N A;  4G2M A;  2RKT A;  2FY5 A;  4HVM A;  1QCA A;  1T6J A;  5F91 A;  1JSW A;  2O7B A;  1EAF A;  1W27 A;  5EYT A;  5KJS A;  4G22 A;  2O6Y A;  3GTD A;  3E04 A;  1KQ7 A;  1TJU A;  4HGV A;  1TJ7 A;  2O7F A;  3CRW 1;  3KDZ A;  4APB A;  2RJS A;  5HW2 A;  1Q23 A;  2O7D A;  4C5R A;  3B30 A;  4KEC A;  2NYF A;  4C5S A;  4BAB A;  3GZH A;  2II4 A;  1GK2 A;  1C3C A;  2X75 A;  2JGP A;  1C3U A;  5KJW A;  4EYW A;  1Q9J A;  1K62 A;  1XL8 A;  4CQ5 A;  5D6B A;  3RRP A;  2H3W A;  3B2S A;  5DU9 A;  2FYO A;  2QGA B;  2QVE A;  1EB4 A;  1TJV A;  3QBP A;  3TV2 A;  2I9D A;  2HVG A;  2FUS A;  2H4T A;  5T3E A;  4G0B A;  1NDF A;  3UNV A;  1J3U A;  2II3 A;  1XWO A;  1T7O A;  4FLC A;  1VDK A; 
#chains in the Genus database with same CATH homology
 1DPC A;  2VSQ A;  2II5 A;  4KE4 A;  2VL7 A;  3FP0 A;  4NLE A;  1DPB A;  1E2O A;  2E1U A;  1EAB A;  2XR7 A;  5FAN A;  1XMD A;  2E9F A;  3FOT A;  1CIA A;  1EAA A;  3CRV A;  3MAE A;  4JN3 A;  1XMC A;  2BGH A;  4CLA A;  4A15 A;  1NOC B;  1L5A A;  1EAE A;  3L60 A;  1EAD A;  2ZBA A;  1CLA A;  1EAC A;  2CLA A;  5DUA A;  1PD5 A;  1XL7 A;  2RKV A;  3U9F A;  4JN5 A;  3CLA A;  4N72 A;  5KJT A;  5H8W A;  2XHG A;  2E1V A;  2E1T A;  5FAL A;  2IHW A;  1DPD A;  1SCZ A;  5KJU A;  5KJV A;  1C4T A;  2VSF A;  4G2M A;  2RKT A;  4HVM A;  1QCA A;  1EAF A;  5KJS A;  4G22 A;  3U9B A;  4KEC A;  1Q23 A;  3CRW 1;  3B30 A;  2II4 A;  2JGP A;  5KJW A;  1Q9J A;  1XL8 A;  3B2S A;  5DU9 A;  2I9D A;  5T3E A;  4G0B A;  2II3 A; 
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