1XL7A

Crystal structure of mouse carnitine octanoyltransferase
Total Genus 206
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
206
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
molecule tags Transferase
source organism Mus musculus
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 206
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl7A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl7A03
1DPBA 1PD5A 3FP0A 1CIAA 5KJWA 1QCAA 4KE4A 1E2OA 2RKTA 3L60A 2IHWA 1DPCA 2JGPA 1EACA 1DPDA 1EAAA 1SCZA 1CLAA 3B30A 4JN5A 3B2SA 5KJSA 5DU9A 5KJUA 2ZBAA 3MAEA 2RKVA 1L5AA 5DUAA 1EABA 2BGHA 4JN3A 4HVMA 5KJVA 4CLAA 1NOCB 2VSQA 4G0BA 2E1TA 2II5A 2II4A 1Q9JA 2II3A 4G2MA 5KJTA 1XMDA 1EAEA 2E1VA 1XL8A 3FOTA 1XL7A 1EADA 2E1UA 5T3EA 3U9BA 1C4TA 2CLAA 1Q23A 2XR7A 4KECA 5FANA 2XHGA 1XMCA 4G22A 3U9FA 3CLAA 1EAFA 2I9DA 4N72A 5FALA
chains in the Genus database with same CATH superfamily
1PD5A 2H3PA 4V2QA 2OHYA 1CIAA 3R6YA 3OCEA 2IHWA 1DPCA 1DPDA 3UNVA 1GK2A 1EAAA 4EP9A 1YFEA 1CLAA 2FY4A 4JN5A 1VDKA 1J3UA 5KJSA 2VL7A 3R6VA 1DCNA 3GZHA 1T6PA 2QGAB 1YFMA 2E9FA 2O7EA 1KQ7A 3NZ4A 4NLEA 4JN3A 2O7BA 4HVMA 1FUPA 1Q9JA 1EAEA 2RCUA 1XL7A 3KDYA 2PTQA 4FLCA 1K62A 3CZOA 1GKMA 1Q23A 2DEBA 1FUOA 4G22A 1K7WA 4ADMA 3CLAA 4NSLA 1EAFA 1EB4A 4N72A 2NYFA 2O6YA 1DPBA 1T1UA 2H3UA 2FY3A 1QCAA 3FP0A 1HY0A 1NM8A 3L60A 5F92A 2J91A 1C3UA 1HY1A 5DU9A 4EYWA 5KJUA 3MAEA 1L5AA 5EYTA 5DUAA 2VD6A 2BGHA 2FY5A 1T7NA 5KJVA 4APAA 2PFMA 2PTSA 3KDZA 4MX2A 4C5RA 2FYOA 3GTDA 2FY2A 2II3A 4G2MA 3NO9A 1XMDA 2E1VA 2FW3A 3FOTA 5KJTA 3U9FA 1DOFA 2H4TA 1U15A 1T7OA 3TV2A 1TJVA 1GKJA 1B8FA 5FALA 2NYNA 1NDBA 1JSWA 2VSFA 4KE4A 1E2OA 5H8WA 2JGPA 2H3WA 1EACA 1SCZA 4APBA 3B2SA 1TJUA 5D6BA 3CRW1 4HGVA 1U16A 5HW2A 1XWOA 2RJRA 4EEIA 1I0AA 4C5SA 2RKVA 1C3CA 4CLAA 4G0BA 3QBPA 2II4A 2O78A 2X75A 1XL8A 3U9BA 2E1UA 4BABA 1S5OA 2CLAA 1TJWA 2XR7A 4KECA 5FANA 5EYVA 1XMCA 1W27A 2RJSA 1T7QA 2I9DA 3CRVA 4C5UA 1T6JA 2PTRA 1NDFA 5KJWA 1Q5NA 1TJ7A 3E04A 3OCFA 1FURA 1Q6XA 2RKTA 2O7FA 3R6QA 2O7DA 3RD8A 1YISA 3B30A 4V2RA 3BHGA 1AUWA 4EPHA 2ZBAA 4EFCA 2HVGA 1EABA 2QVEA 4BAAA 4C6GA 1FUQA 1GK3A 4FFXA 1NOCB 2VSQA 1RE5A 2E1TA 2II5A 4CQ5A 3C8TA 2FUSA 4ADLA 4A15A 5T3EA 1EADA 1Y2MA 1C4TA 2YIIA 1NDIA 2XHGA 5F91A 3RRPA
chains in the Genus database with same CATH topology
1PD5A 1CIAA 2IHWA 1DPCA 1DPDA 1EAAA 1CLAA 4JN5A 5KJSA 2VL7A 2E9FA 4NLEA 4JN3A 4HVMA 1Q9JA 1EAEA 1XL7A 1Q23A 4G22A 3CLAA 1EAFA 4N72A 1DPBA 3FP0A 1QCAA 3L60A 5DU9A 5KJUA 3MAEA 1L5AA 5DUAA 2BGHA 5KJVA 2II3A 4G2MA 5KJTA 1XMDA 2E1VA 3FOTA 3U9FA 5FALA 2VSFA 4KE4A 1E2OA 5H8WA 2JGPA 1EACA 1SCZA 3B2SA 3CRW1 2RKVA 4CLAA 4G0BA 2II4A 1XL8A 3U9BA 2E1UA 2CLAA 2XR7A 4KECA 5FANA 1XMCA 2I9DA 3CRVA 5KJWA 2RKTA 3B30A 2ZBAA 1EABA 1NOCB 2VSQA 2E1TA 2II5A 4A15A 5T3EA 1EADA 1C4TA 2XHGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DPB A;  1PD5 A;  3FP0 A;  1CIA A;  5KJW A;  1QCA A;  4KE4 A;  1E2O A;  2RKT A;  3L60 A;  2IHW A;  1DPC A;  2JGP A;  1EAC A;  1DPD A;  1EAA A;  1SCZ A;  1CLA A;  3B30 A;  4JN5 A;  3B2S A;  5KJS A;  5DU9 A;  5KJU A;  2ZBA A;  3MAE A;  2RKV A;  1L5A A;  5DUA A;  1EAB A;  2BGH A;  4JN3 A;  4HVM A;  5KJV A;  4CLA A;  1NOC B;  2VSQ A;  4G0B A;  2E1T A;  2II5 A;  2II4 A;  1Q9J A;  2II3 A;  4G2M A;  5KJT A;  1XMD A;  1EAE A;  2E1V A;  1XL8 A;  3FOT A;  1XL7 A;  1EAD A;  2E1U A;  5T3E A;  3U9B A;  1C4T A;  2CLA A;  1Q23 A;  2XR7 A;  4KEC A;  5FAN A;  2XHG A;  1XMC A;  4G22 A;  3U9F A;  3CLA A;  1EAF A;  2I9D A;  4N72 A;  5FAL A; 
#chains in the Genus database with same CATH topology
 1PD5 A;  2H3P A;  4V2Q A;  2OHY A;  1CIA A;  3R6Y A;  3OCE A;  2IHW A;  1DPC A;  1DPD A;  3UNV A;  1GK2 A;  1EAA A;  4EP9 A;  1YFE A;  1CLA A;  2FY4 A;  4JN5 A;  1VDK A;  1J3U A;  5KJS A;  2VL7 A;  3R6V A;  1DCN A;  3GZH A;  1T6P A;  2QGA B;  1YFM A;  2E9F A;  2O7E A;  1KQ7 A;  3NZ4 A;  4NLE A;  4JN3 A;  2O7B A;  4HVM A;  1FUP A;  1Q9J A;  1EAE A;  2RCU A;  1XL7 A;  3KDY A;  2PTQ A;  4FLC A;  1K62 A;  3CZO A;  1GKM A;  1Q23 A;  2DEB A;  1FUO A;  4G22 A;  1K7W A;  4ADM A;  3CLA A;  4NSL A;  1EAF A;  1EB4 A;  4N72 A;  2NYF A;  2O6Y A;  1DPB A;  1T1U A;  2H3U A;  2FY3 A;  1QCA A;  3FP0 A;  1HY0 A;  1NM8 A;  3L60 A;  5F92 A;  2J91 A;  1C3U A;  1HY1 A;  5DU9 A;  4EYW A;  5KJU A;  3MAE A;  1L5A A;  5EYT A;  5DUA A;  2VD6 A;  2BGH A;  2FY5 A;  1T7N A;  5KJV A;  4APA A;  2PFM A;  2PTS A;  3KDZ A;  4MX2 A;  4C5R A;  2FYO A;  3GTD A;  2FY2 A;  2II3 A;  4G2M A;  3NO9 A;  1XMD A;  2E1V A;  2FW3 A;  3FOT A;  5KJT A;  3U9F A;  1DOF A;  2H4T A;  1U15 A;  1T7O A;  3TV2 A;  1TJV A;  1GKJ A;  1B8F A;  5FAL A;  2NYN A;  1NDB A;  1JSW A;  2VSF A;  4KE4 A;  1E2O A;  5H8W A;  2JGP A;  2H3W A;  1EAC A;  1SCZ A;  4APB A;  3B2S A;  1TJU A;  5D6B A;  3CRW 1;  4HGV A;  1U16 A;  5HW2 A;  1XWO A;  2RJR A;  4EEI A;  1I0A A;  4C5S A;  2RKV A;  1C3C A;  4CLA A;  4G0B A;  3QBP A;  2II4 A;  2O78 A;  2X75 A;  1XL8 A;  3U9B A;  2E1U A;  4BAB A;  1S5O A;  2CLA A;  1TJW A;  2XR7 A;  4KEC A;  5FAN A;  5EYV A;  1XMC A;  1W27 A;  2RJS A;  1T7Q A;  2I9D A;  3CRV A;  4C5U A;  1T6J A;  2PTR A;  1NDF A;  5KJW A;  1Q5N A;  1TJ7 A;  3E04 A;  3OCF A;  1FUR A;  1Q6X A;  2RKT A;  2O7F A;  3R6Q A;  2O7D A;  3RD8 A;  1YIS A;  3B30 A;  4V2R A;  3BHG A;  1AUW A;  4EPH A;  2ZBA A;  4EFC A;  2HVG A;  1EAB A;  2QVE A;  4BAA A;  4C6G A;  1FUQ A;  1GK3 A;  4FFX A;  1NOC B;  2VSQ A;  1RE5 A;  2E1T A;  2II5 A;  4CQ5 A;  3C8T A;  2FUS A;  4ADL A;  4A15 A;  5T3E A;  1EAD A;  1Y2M A;  1C4T A;  2YII A;  1NDI A;  2XHG A;  5F91 A;  3RRP A; 
#chains in the Genus database with same CATH homology
 1PD5 A;  1CIA A;  2IHW A;  1DPC A;  1DPD A;  1EAA A;  1CLA A;  4JN5 A;  5KJS A;  2VL7 A;  2E9F A;  4NLE A;  4JN3 A;  4HVM A;  1Q9J A;  1EAE A;  1XL7 A;  1Q23 A;  4G22 A;  3CLA A;  1EAF A;  4N72 A;  1DPB A;  3FP0 A;  1QCA A;  3L60 A;  5DU9 A;  5KJU A;  3MAE A;  1L5A A;  5DUA A;  2BGH A;  5KJV A;  2II3 A;  4G2M A;  5KJT A;  1XMD A;  2E1V A;  3FOT A;  3U9F A;  5FAL A;  2VSF A;  4KE4 A;  1E2O A;  5H8W A;  2JGP A;  1EAC A;  1SCZ A;  3B2S A;  3CRW 1;  2RKV A;  4CLA A;  4G0B A;  2II4 A;  1XL8 A;  3U9B A;  2E1U A;  2CLA A;  2XR7 A;  4KEC A;  5FAN A;  1XMC A;  2I9D A;  3CRV A;  5KJW A;  2RKT A;  3B30 A;  2ZBA A;  1EAB A;  1NOC B;  2VSQ A;  2E1T A;  2II5 A;  4A15 A;  5T3E A;  1EAD A;  1C4T A;  2XHG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...