1AISA

Tata-binding protein/transcription factor (ii)b/tata-box complex from pyrococcus woesei
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
181
structure length
181
Chain Sequence
MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLRELDKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA (5'-D(*AP*AP*CP*TP*TP*AP*CP*TP*TP*TP*(5IU)P*(5IU)P*AP*AP
publication title The 2.1-A crystal structure of an archaeal preinitiation complex: TATA-box-binding protein/transcription factor (II)B core/TATA-box.
pubmed doi rcsb
source organism Pyrococcus woesei
total genus 44
structure length 181
sequence length 181
ec nomenclature
pdb deposition date 1997-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1aisA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1aisA02
4RODB 1TGHA 2VJ0A 3H1ZA 2IV9A 1QNAA 4B0AA 2D0AA 1VOLB 5IYDP 1QN6A 3OC3C 1QNBA 1PZDA 1NH2A 1QN5A 1QN8A 2MJ7A 1VOKA 4WZSD 1B9KA 2D0BA 3VN5A 1QNCA 3HS9A 3OCIA 1VTOA 1VTLE 4ROEB 1KY6A 1KYDA 4PY5A 1AISA 1KY7A 2IV8A 1YTFA 1E42A 1YTBA 1PCZA 1KYFA 1QN3A 3HS8A 1C9BB 1KYUA 2Z8UA 5IYBP 1QTPA 2G30A 1QTSA 3ASMA 1D3UA 1QN9A 1QN4A 1QN7A 1MP9A 1QNEA 1RM1A 3EIKA 1R4XA 1TBPA 1W80A 1TBAB 2D0CA 1CDWA 1NGMA 1NVPA 4ROCB 1JFIC 5IYCP
chains in the Genus database with same CATH superfamily
2Y8LA 3OH6A 2VJ0A 1LWYA 1EUVA 2PWWA 3H1ZA 3F10A 4B0AA 2O3OA 1UT7A 1V5SA 1T6AA 5HSHA 1VOKA 5KL0A 3KTUA 2F7LA 1FN7A 2NVMA 5AN4A 1EBMA 4EJYA 2NOLA 3OH9A 1VTLE 3DPTA 5EPCA 3ENCA 1AISA 2IV8A 2HZSA 3ULXA 2QREA 1P5GX 1N3CA 2NOFA 1PCJX 1KYUA 1J3MA 2Z8UA 1QTPA 3CWAA 2OOXA 4DULA 1RM1A 1DIZA 1R4XA 4EAGA 3NA5A 3UW2A 3OSMA 1WQAA 2NLVA 2YH5A 1WJWA 1TGHA 1KFQA 1JDYA 1YQLA 2H4LX 1YQMA 2NOIA 4D7RA 2V8QA 2EHBD 2I5WA 3OC3C 1QNBA 2DKDA 3C04A 4WZSD 2HL8A 1QNCA 1MPGA 4I8OA 2JHNA 3OCIA 3BKQX 3N89A 2LAEA 2HL9A 2H5AX 4WXAA 4PY5A 2OOYA 1KY7A 2FUVA 4Q11A 1YTBA 1K2YX 3OLPA 1KYFA 1YQKA 1YQRA 1KO9A 5JMVD 1C9BB 3I3WA 5IYBP 3CVTA 1QTSA 3I0WA 2NOZA 1M3QA 4IL8A 1UT4A 3EIKA 2FKMX 1W80A 2D0CA 4ROCB 1HU0A 1VKLA 3D7QA 3T4NA 1C4GA 5IYCP 2YA3A 2Y8QA 2QRCA 1XSZA 3CVSA 2MZ8A 1QNAA 2D0AA 1VOLB 3ENOC 4C7PA 3OSEA 2DKAA 5IYDP 3IH7A 1QN5A 1QN8A 4HJHA 1B9KA 3I0XA 2R5XA 2D0BA 1Q9UA 2FKFA 3HS9A 3RSMA 1VTOA 1LWVA 2HKPA 2V92A 1KYDA 1C47A 1TUOA 2QR1A 2XHIA 4QG5A 3RPJA 4EAJA 1YTFA 4EAIA 3KRMA 4BJUA 1QN3A 3HS8A 1QN9A 4D7QA 1K35A 3TE5A 1D3UA 3CWUA 2QLVA 3F0ZA 1QN4A 1MP9A 1QN7A 1M5Q1 1TBPA 1TBAB 3CWSA 4WX8A 5F9CA 3EAYA 4RODB 2JOIA 1P5DX 2V9JA 3PMGA 1LWWA 1UL7A 2IV9A 2FGTA 2QRDA 1QN6A 3CW7A 1PZDA 2NOBA 4CFFA 1NH2A 2NOHA 3OGDA 3SNSA 2MJ7A 2HZMA 2JHJA 1PVSA 3PDKA 2DKCA 2JPIA 3VN5A 3CWTA 2ZFDB 4ROEB 4MRQA 1PCMX 3OSTA 1KY6A 4TPSA 3D4VA 1N3AA 4EAKA 3DPUA 2NWVA 3TDHA 1E42A 1KFIA 1N39A 1PCZA 1LXTA 2G30A 3ASMA 5BMNA 1M3HA 1QNEA 4EALA 1CDWA 5JN5A 2NOEA 5BMPA 4EJZA 1NGMA 1NVPA 2Z0FA 1JFIC
chains in the Genus database with same CATH topology
2VJ0A 1LWYA 3H1ZA 3F10A 4B0AA 2O3OA 1UT7A 1FN7A 1VOKA 3KTUA 5AN4A 1EBMA 4EJYA 2NOLA 1VTLE 3DPTA 1AISA 2IV8A 2HZSA 3ULXA 1N3CA 2NOFA 1KYUA 2Z8UA 1QTPA 4DULA 1RM1A 1R4XA 3OSMA 2YH5A 1TGHA 1YQLA 1YQMA 2NOIA 2I5WA 3OC3C 1QNBA 4WZSD 1QNCA 4I8OA 3OCIA 3N89A 2LAEA 4PY5A 1KY7A 4Q11A 1YTBA 1KYFA 1YQKA 1YQRA 1KO9A 1C9BB 5IYBP 1QTSA 3I0WA 2NOZA 1M3QA 1UT4A 3EIKA 1W80A 2D0CA 4ROCB 1HU0A 5IYCP 2MZ8A 1QNAA 2D0AA 1VOLB 5IYDP 3IH7A 1QN5A 1QN8A 1B9KA 3I0XA 2D0BA 3HS9A 1VTOA 1LWVA 1KYDA 2XHIA 3RPJA 1YTFA 3KRMA 1QN3A 3HS8A 1QN9A 1D3UA 1QN4A 3F0ZA 1QN7A 1MP9A 1TBPA 1TBAB 4RODB 2JOIA 1LWWA 2IV9A 2FGTA 1QN6A 1PZDA 2NOBA 2NOHA 1NH2A 3SNSA 2MJ7A 2HZMA 3VN5A 4ROEB 1N3AA 4TPSA 3OSTA 1KY6A 3DPUA 1E42A 1N39A 1PCZA 2G30A 3ASMA 1M3HA 1QNEA 1CDWA 2NOEA 4EJZA 1NGMA 1NVPA 1JFIC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ROD B;  1TGH A;  2VJ0 A;  3H1Z A;  2IV9 A;  1QNA A;  4B0A A;  2D0A A;  1VOL B;  5IYD P;  1QN6 A;  3OC3 C;  1QNB A;  1PZD A;  1NH2 A;  1QN5 A;  1QN8 A;  2MJ7 A;  1VOK A;  4WZS D;  1B9K A;  2D0B A;  3VN5 A;  1QNC A;  3HS9 A;  3OCI A;  1VTO A;  1VTL E;  4ROE B;  1KY6 A;  1KYD A;  4PY5 A;  1AIS A;  1KY7 A;  2IV8 A;  1YTF A;  1E42 A;  1YTB A;  1PCZ A;  1KYF A;  1QN3 A;  3HS8 A;  1C9B B;  1KYU A;  2Z8U A;  5IYB P;  1QTP A;  2G30 A;  1QTS A;  3ASM A;  1D3U A;  1QN9 A;  1QN4 A;  1QN7 A;  1MP9 A;  1QNE A;  1RM1 A;  3EIK A;  1R4X A;  1TBP A;  1W80 A;  1TBA B;  2D0C A;  1CDW A;  1NGM A;  1NVP A;  4ROC B;  1JFI C;  5IYC P; 
#chains in the Genus database with same CATH topology
 2Y8L A;  3OH6 A;  2VJ0 A;  1LWY A;  1EUV A;  2PWW A;  3H1Z A;  3F10 A;  4B0A A;  2O3O A;  1UT7 A;  1V5S A;  1T6A A;  5HSH A;  1VOK A;  5KL0 A;  3KTU A;  2F7L A;  1FN7 A;  2NVM A;  5AN4 A;  1EBM A;  4EJY A;  2NOL A;  3OH9 A;  1VTL E;  3DPT A;  5EPC A;  3ENC A;  1AIS A;  2IV8 A;  2HZS A;  3ULX A;  2QRE A;  1P5G X;  1N3C A;  2NOF A;  1PCJ X;  1KYU A;  1J3M A;  2Z8U A;  1QTP A;  3CWA A;  2OOX A;  4DUL A;  1RM1 A;  1DIZ A;  1R4X A;  4EAG A;  3NA5 A;  3UW2 A;  3OSM A;  1WQA A;  2NLV A;  2YH5 A;  1WJW A;  1TGH A;  1KFQ A;  1JDY A;  1YQL A;  2H4L X;  1YQM A;  2NOI A;  4D7R A;  2V8Q A;  2EHB D;  2I5W A;  3OC3 C;  1QNB A;  2DKD A;  3C04 A;  4WZS D;  2HL8 A;  1QNC A;  1MPG A;  4I8O A;  2JHN A;  3OCI A;  3BKQ X;  3N89 A;  2LAE A;  2HL9 A;  2H5A X;  4WXA A;  4PY5 A;  2OOY A;  1KY7 A;  2FUV A;  4Q11 A;  1YTB A;  1K2Y X;  3OLP A;  1KYF A;  1YQK A;  1YQR A;  1KO9 A;  5JMV D;  1C9B B;  3I3W A;  5IYB P;  3CVT A;  1QTS A;  3I0W A;  2NOZ A;  1M3Q A;  4IL8 A;  1UT4 A;  3EIK A;  2FKM X;  1W80 A;  2D0C A;  4ROC B;  1HU0 A;  1VKL A;  3D7Q A;  3T4N A;  1C4G A;  5IYC P;  2YA3 A;  2Y8Q A;  2QRC A;  1XSZ A;  3CVS A;  2MZ8 A;  1QNA A;  2D0A A;  1VOL B;  3ENO C;  4C7P A;  3OSE A;  2DKA A;  5IYD P;  3IH7 A;  1QN5 A;  1QN8 A;  4HJH A;  1B9K A;  3I0X A;  2R5X A;  2D0B A;  1Q9U A;  2FKF A;  3HS9 A;  3RSM A;  1VTO A;  1LWV A;  2HKP A;  2V92 A;  1KYD A;  1C47 A;  1TUO A;  2QR1 A;  2XHI A;  4QG5 A;  3RPJ A;  4EAJ A;  1YTF A;  4EAI A;  3KRM A;  4BJU A;  1QN3 A;  3HS8 A;  1QN9 A;  4D7Q A;  1K35 A;  3TE5 A;  1D3U A;  3CWU A;  2QLV A;  3F0Z A;  1QN4 A;  1MP9 A;  1QN7 A;  1M5Q 1;  1TBP A;  1TBA B;  3CWS A;  4WX8 A;  5F9C A;  3EAY A;  4ROD B;  2JOI A;  1P5D X;  2V9J A;  3PMG A;  1LWW A;  1UL7 A;  2IV9 A;  2FGT A;  2QRD A;  1QN6 A;  3CW7 A;  1PZD A;  2NOB A;  4CFF A;  1NH2 A;  2NOH A;  3OGD A;  3SNS A;  2MJ7 A;  2HZM A;  2JHJ A;  1PVS A;  3PDK A;  2DKC A;  2JPI A;  3VN5 A;  3CWT A;  2ZFD B;  4ROE B;  4MRQ A;  1PCM X;  3OST A;  1KY6 A;  4TPS A;  3D4V A;  1N3A A;  4EAK A;  3DPU A;  2NWV A;  3TDH A;  1E42 A;  1KFI A;  1N39 A;  1PCZ A;  1LXT A;  2G30 A;  3ASM A;  5BMN A;  1M3H A;  1QNE A;  4EAL A;  1CDW A;  5JN5 A;  2NOE A;  5BMP A;  4EJZ A;  1NGM A;  1NVP A;  2Z0F A;  1JFI C; 
#chains in the Genus database with same CATH homology
 2VJ0 A;  1LWY A;  3H1Z A;  3F10 A;  4B0A A;  2O3O A;  1UT7 A;  1FN7 A;  1VOK A;  3KTU A;  5AN4 A;  1EBM A;  4EJY A;  2NOL A;  1VTL E;  3DPT A;  1AIS A;  2IV8 A;  2HZS A;  3ULX A;  1N3C A;  2NOF A;  1KYU A;  2Z8U A;  1QTP A;  4DUL A;  1RM1 A;  1R4X A;  3OSM A;  2YH5 A;  1TGH A;  1YQL A;  1YQM A;  2NOI A;  2I5W A;  3OC3 C;  1QNB A;  4WZS D;  1QNC A;  4I8O A;  3OCI A;  3N89 A;  2LAE A;  4PY5 A;  1KY7 A;  4Q11 A;  1YTB A;  1KYF A;  1YQK A;  1YQR A;  1KO9 A;  1C9B B;  5IYB P;  1QTS A;  3I0W A;  2NOZ A;  1M3Q A;  1UT4 A;  3EIK A;  1W80 A;  2D0C A;  4ROC B;  1HU0 A;  5IYC P;  2MZ8 A;  1QNA A;  2D0A A;  1VOL B;  5IYD P;  3IH7 A;  1QN5 A;  1QN8 A;  1B9K A;  3I0X A;  2D0B A;  3HS9 A;  1VTO A;  1LWV A;  1KYD A;  2XHI A;  3RPJ A;  1YTF A;  3KRM A;  1QN3 A;  3HS8 A;  1QN9 A;  1D3U A;  1QN4 A;  3F0Z A;  1QN7 A;  1MP9 A;  1TBP A;  1TBA B;  4ROD B;  2JOI A;  1LWW A;  2IV9 A;  2FGT A;  1QN6 A;  1PZD A;  2NOB A;  2NOH A;  1NH2 A;  3SNS A;  2MJ7 A;  2HZM A;  3VN5 A;  4ROE B;  1N3A A;  4TPS A;  3OST A;  1KY6 A;  3DPU A;  1E42 A;  1N39 A;  1PCZ A;  2G30 A;  3ASM A;  1M3H A;  1QNE A;  1CDW A;  2NOE A;  4EJZ A;  1NGM A;  1NVP A;  1JFI C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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