4WXAA

Crystal structure of binary complex gon7-pcc1
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
84
structure length
84
Chain Sequence
KSLDHTLELKIPFETERQATIATKVLSPDPILKPQDFQVDYSSEKNVMLVQFRSIDDRVLRVGVSSIIDSIKTIVEAMDVLSHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords EKC/KEOPS complex subunit PCC1
publication title Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Transcription
total genus 23
structure length 84
sequence length 84
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09341 Pcc1 Transcription factor Pcc1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4wxaA00
4MRQA 1WQAA 1TUOA 3PMGA 1KFQA 4IL8A 5EPCA 2JPIA 2DKCA 1K2YX 4HJHA 5BMNA 5F9CA 2H4LX 2H5AX 3UW2A 1PCMX 4QG5A 5BMPA 5JMVD 4BJUA 4WXAA 1KFIA 1C47A 2DKDA 3RSMA 3ENOC 2FKMX 3NA5A 2Z0FA 2FUVA 1C4GA 1VKLA 3OLPA 2FKFA 5JN5A 3BKQX 1LXTA 3I3WA 2DKAA 4WX8A 1K35A 3C04A 3PDKA 5HSHA 1P5DX 1JDYA 3ENCA 5KL0A 1P5GX 1WJWA 2F7LA 1PCJX
chains in the Genus database with same CATH superfamily
1QN3A 2QR1A 3TDHA 2D0BA 2V9JA 4IL8A 4HJHA 1KY6A 4Q11A 2Y8QA 5F9CA 3HS8A 3DPUA 1KYDA 3TE5A 3UW2A 5BMPA 4D7QA 4BJUA 4EAKA 1C9BB 1T6AA 1QN8A 1KFIA 1LWVA 1C47A 1J3MA 3OH9A 3NA5A 2FUVA 1C4GA 2FKFA 1EUVA 3BKQX 1QN7A 2NVMA 2Z8UA 2QREA 3PDKA 1D3UA 1QNAA 1M5Q1 2MZ8A 2NOZA 5KL0A 1P5GX 2G30A 1Q9UA 4EAJA 2NOFA 2LAEA 3OH6A 1QN9A 3IH7A 1YQKA 1WQAA 2PWWA 2NOEA 1KFQA 5EPCA 1YTFA 2DKCA 2NLVA 2V8QA 3ULXA 3CWAA 1KYUA 1N3AA 1N39A 5JMVD 4QG5A 2MJ7A 5IYCP 1KYFA 5IYBP 1R4XA 1M3QA 1V5SA 4EJZA 1MP9A 1YQMA 2QLVA 2D0CA 4EAGA 2JHJA 3N89A 1FN7A 3T4NA 4D7RA 3ENOC 1QTSA 2FKMX 1RM1A 5AN4A 1LWWA 4DULA 1VOLB 2YH5A 1KY7A 1LXTA 3I3WA 3D7QA 1NVPA 3C04A 2FGTA 1LWYA 2ZFDB 2D0AA 1KO9A 1P5DX 1PZDA 1VOKA 2HKPA 1QN5A 3ENCA 1DIZA 3CVSA 4TPSA 2Y8LA 1WJWA 3CVTA 3D4VA 2EHBD 2H4LX 1PCJX 2QRDA 3SNSA 4MRQA 3I0WA 4I8OA 3OSMA 2I5WA 1QN4A 3OSEA 2NOIA 2JPIA 1K2YX 5BMNA 1EBMA 3H1ZA 2H5AX 1QNEA 1PCMX 1QTPA 2YA3A 1HU0A 3CWSA 1YTBA 1M3HA 4PY5A 3EIKA 3RPJA 2NOLA 2HZMA 2IV8A 1YQLA 2Z0FA 3VN5A 1VKLA 2JOIA 4C7PA 1JFIC 4RODB 4CFFA 1B9KA 2JHNA 1K35A 1UL7A 2O3OA 5HSHA 2NWVA 2XHIA 3CW7A 2HL9A 1W80A 2QRCA 2OOYA 1VTOA 2F7LA 4B0AA 4EALA 2NOBA 3F10A 3KTUA 1AISA 3OCIA 1TUOA 3CWUA 3PMGA 1YQRA 1E42A 3EAYA 1MPGA 3OSTA 1N3CA 4WXAA 1PVSA 2VJ0A 4ROEB 1QN6A 2DKDA 4EAIA 1NGMA 1TBAB 3RSMA 1CDWA 3ASMA 3F0ZA 1UT4A 1VTLE 2OOXA 1NH2A 1TGHA 3OLPA 4WZSD 4EJYA 2NOHA 2HL8A 2V92A 5JN5A 1TBPA 2DKAA 4WX8A 3OGDA 1UT7A 2IV9A 5IYDP 4ROCB 2R5XA 1JDYA 3HS9A 3I0XA 3OC3C 3DPTA 1PCZA 1QNBA 1XSZA 3CWTA 1QNCA 3KRMA 2HZSA
chains in the Genus database with same CATH topology
4MRQA 1WQAA 1TUOA 3PMGA 1KFQA 4IL8A 5EPCA 2JPIA 2DKCA 1K2YX 4HJHA 5BMNA 5F9CA 2H4LX 2H5AX 3UW2A 1PCMX 4QG5A 5BMPA 5JMVD 4BJUA 4WXAA 1KFIA 1C47A 2DKDA 3RSMA 3ENOC 2FKMX 3NA5A 2Z0FA 2FUVA 1C4GA 1VKLA 3OLPA 2FKFA 5JN5A 3BKQX 1LXTA 3I3WA 2DKAA 4WX8A 1K35A 3C04A 3PDKA 5HSHA 1P5DX 1JDYA 3ENCA 5KL0A 1P5GX 1WJWA 2F7LA 1PCJX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MRQ A;  1WQA A;  1TUO A;  3PMG A;  1KFQ A;  4IL8 A;  5EPC A;  2JPI A;  2DKC A;  1K2Y X;  4HJH A;  5BMN A;  5F9C A;  2H4L X;  2H5A X;  3UW2 A;  1PCM X;  4QG5 A;  5BMP A;  5JMV D;  4BJU A;  4WXA A;  1KFI A;  1C47 A;  2DKD A;  3RSM A;  3ENO C;  2FKM X;  3NA5 A;  2Z0F A;  2FUV A;  1C4G A;  1VKL A;  3OLP A;  2FKF A;  5JN5 A;  3BKQ X;  1LXT A;  3I3W A;  2DKA A;  4WX8 A;  1K35 A;  3C04 A;  3PDK A;  5HSH A;  1P5D X;  1JDY A;  3ENC A;  5KL0 A;  1P5G X;  1WJW A;  2F7L A;  1PCJ X; 
#chains in the Genus database with same CATH topology
 1QN3 A;  2QR1 A;  3TDH A;  2D0B A;  2V9J A;  4IL8 A;  4HJH A;  1KY6 A;  4Q11 A;  2Y8Q A;  5F9C A;  3HS8 A;  3DPU A;  1KYD A;  3TE5 A;  3UW2 A;  5BMP A;  4D7Q A;  4BJU A;  4EAK A;  1C9B B;  1T6A A;  1QN8 A;  1KFI A;  1LWV A;  1C47 A;  1J3M A;  3OH9 A;  3NA5 A;  2FUV A;  1C4G A;  2FKF A;  1EUV A;  3BKQ X;  1QN7 A;  2NVM A;  2Z8U A;  2QRE A;  3PDK A;  1D3U A;  1QNA A;  1M5Q 1;  2MZ8 A;  2NOZ A;  5KL0 A;  1P5G X;  2G30 A;  1Q9U A;  4EAJ A;  2NOF A;  2LAE A;  3OH6 A;  1QN9 A;  3IH7 A;  1YQK A;  1WQA A;  2PWW A;  2NOE A;  1KFQ A;  5EPC A;  1YTF A;  2DKC A;  2NLV A;  2V8Q A;  3ULX A;  3CWA A;  1KYU A;  1N3A A;  1N39 A;  5JMV D;  4QG5 A;  2MJ7 A;  5IYC P;  1KYF A;  5IYB P;  1R4X A;  1M3Q A;  1V5S A;  4EJZ A;  1MP9 A;  1YQM A;  2QLV A;  2D0C A;  4EAG A;  2JHJ A;  3N89 A;  1FN7 A;  3T4N A;  4D7R A;  3ENO C;  1QTS A;  2FKM X;  1RM1 A;  5AN4 A;  1LWW A;  4DUL A;  1VOL B;  2YH5 A;  1KY7 A;  1LXT A;  3I3W A;  3D7Q A;  1NVP A;  3C04 A;  2FGT A;  1LWY A;  2ZFD B;  2D0A A;  1KO9 A;  1P5D X;  1PZD A;  1VOK A;  2HKP A;  1QN5 A;  3ENC A;  1DIZ A;  3CVS A;  4TPS A;  2Y8L A;  1WJW A;  3CVT A;  3D4V A;  2EHB D;  2H4L X;  1PCJ X;  2QRD A;  3SNS A;  4MRQ A;  3I0W A;  4I8O A;  3OSM A;  2I5W A;  1QN4 A;  3OSE A;  2NOI A;  2JPI A;  1K2Y X;  5BMN A;  1EBM A;  3H1Z A;  2H5A X;  1QNE A;  1PCM X;  1QTP A;  2YA3 A;  1HU0 A;  3CWS A;  1YTB A;  1M3H A;  4PY5 A;  3EIK A;  3RPJ A;  2NOL A;  2HZM A;  2IV8 A;  1YQL A;  2Z0F A;  3VN5 A;  1VKL A;  2JOI A;  4C7P A;  1JFI C;  4ROD B;  4CFF A;  1B9K A;  2JHN A;  1K35 A;  1UL7 A;  2O3O A;  5HSH A;  2NWV A;  2XHI A;  3CW7 A;  2HL9 A;  1W80 A;  2QRC A;  2OOY A;  1VTO A;  2F7L A;  4B0A A;  4EAL A;  2NOB A;  3F10 A;  3KTU A;  1AIS A;  3OCI A;  1TUO A;  3CWU A;  3PMG A;  1YQR A;  1E42 A;  3EAY A;  1MPG A;  3OST A;  1N3C A;  4WXA A;  1PVS A;  2VJ0 A;  4ROE B;  1QN6 A;  2DKD A;  4EAI A;  1NGM A;  1TBA B;  3RSM A;  1CDW A;  3ASM A;  3F0Z A;  1UT4 A;  1VTL E;  2OOX A;  1NH2 A;  1TGH A;  3OLP A;  4WZS D;  4EJY A;  2NOH A;  2HL8 A;  2V92 A;  5JN5 A;  1TBP A;  2DKA A;  4WX8 A;  3OGD A;  1UT7 A;  2IV9 A;  5IYD P;  4ROC B;  2R5X A;  1JDY A;  3HS9 A;  3I0X A;  3OC3 C;  3DPT A;  1PCZ A;  1QNB A;  1XSZ A;  3CWT A;  1QNC A;  3KRM A;  2HZS A; 
#chains in the Genus database with same CATH homology
 4MRQ A;  1WQA A;  1TUO A;  3PMG A;  1KFQ A;  4IL8 A;  5EPC A;  2JPI A;  2DKC A;  1K2Y X;  4HJH A;  5BMN A;  5F9C A;  2H4L X;  2H5A X;  3UW2 A;  1PCM X;  4QG5 A;  5BMP A;  5JMV D;  4BJU A;  4WXA A;  1KFI A;  1C47 A;  2DKD A;  3RSM A;  3ENO C;  2FKM X;  3NA5 A;  2Z0F A;  2FUV A;  1C4G A;  1VKL A;  3OLP A;  2FKF A;  5JN5 A;  3BKQ X;  1LXT A;  3I3W A;  2DKA A;  4WX8 A;  1K35 A;  3C04 A;  3PDK A;  5HSH A;  1P5D X;  1JDY A;  3ENC A;  5KL0 A;  1P5G X;  1WJW A;  2F7L A;  1PCJ X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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