4WXAA

Crystal structure of binary complex gon7-pcc1
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
84
structure length
84
Chain Sequence
KSLDHTLELKIPFETERQATIATKVLSPDPILKPQDFQVDYSSEKNVMLVQFRSIDDRVLRVGVSSIIDSIKTIVEAMDVLSHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords EKC/KEOPS complex subunit PCC1
publication title Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 23
structure length 84
sequence length 84
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09341 Pcc1 Transcription factor Pcc1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 4wxaA00
2H4LX 1TUOA 1C47A 1PCJX 3UW2A 1PCMX 4IL8A 3PDKA 3PMGA 1K2YX 3NA5A 1WJWA 2H5AX 1WQAA 4MRQA 1VKLA 5JN5A 5BMNA 2JPIA 1KFIA 1LXTA 2DKCA 5F9CA 1C4GA 3ENOC 5BMPA 2FUVA 3I3WA 2F7LA 2DKDA 5EPCA 3ENCA 2FKMX 1P5GX 2Z0FA 1KFQA 3RSMA 3BKQX 4HJHA 5JMVD 1K35A 3OLPA 5HSHA 1P5DX 1JDYA 2FKFA 4QG5A 4BJUA 2DKAA 3C04A 4WXAA 4WX8A 5KL0A
chains in the Genus database with same CATH superfamily
1KYFA 1TBAB 2D0CA 2OOYA 2IV9A 1QN5A 1PCMX 2NOZA 1KY6A 3PMGA 3OSEA 3CW7A 1QN9A 2QLVA 5BMNA 3DPTA 4EAJA 1LXTA 1M3HA 1C9BB 1J3MA 4EJZA 1YQMA 1KYUA 2V8QA 2F7LA 4EAKA 3OGDA 3OH9A 2G30A 3ENCA 1LWYA 2NOLA 4EAIA 1M3QA 2QREA 1JFIC 2MZ8A 1PCZA 3BKQX 3OSTA 4HJHA 1AISA 1N39A 1N3CA 2V9JA 1EBMA 4Q11A 2NOIA 4D7QA 5AN4A 1Q9UA 1R4XA 4BJUA 2JHNA 4B0AA 1M5Q1 3H1ZA 2LAEA 1DIZA 2H4LX 1C47A 3UW2A 1E42A 1PZDA 1UT7A 2OOXA 2NWVA 4I8OA 4IL8A 4TPSA 2HZSA 1RM1A 3SNSA 2HKPA 4MRQA 1VKLA 3HS9A 3EAYA 4D7RA 2R5XA 2HL8A 3I0XA 1QNBA 1KY7A 1KFIA 2QRDA 2NOEA 2HL9A 3ENOC 3OC3C 3CWUA 5BMPA 2FUVA 4DULA 3EIKA 4EJYA 2DKDA 2YA3A 1CDWA 1XSZA 4ROEB 3HS8A 3CWAA 1P5GX 3KRMA 2XHIA 3OCIA 2O3OA 3CWTA 2NLVA 1PVSA 1HU0A 1T6AA 3OLPA 1KO9A 1P5DX 2FKFA 4C7PA 1MPGA 5IYBP 2DKAA 1VOKA 3RPJA 4WX8A 1D3UA 1QN8A 1PCJX 1YTBA 3PDKA 1WJWA 2H5AX 1EUVA 1WQAA 1MP9A 4EALA 2VJ0A 3CVSA 1QNEA 2JPIA 2JOIA 2DKCA 2NOFA 1QN4A 1W80A 2NOHA 2Z8UA 2NOBA 4CFFA 2D0AA 5EPCA 1FN7A 3F10A 2FKMX 1KYDA 1N3AA 1TGHA 3D7QA 2Z0FA 1KFQA 2NVMA 3RSMA 3CVTA 4RODB 2V92A 3ASMA 3ULXA 2MJ7A 1K35A 3TE5A 1YQKA 1JDYA 4ROCB 4QG5A 1UT4A 1NH2A 1TBPA 1QTPA 1YQLA 3F0ZA 5KL0A 2FGTA 1LWVA 1QNAA 2I5WA 1TUOA 2YH5A 4WZSD 3D4VA 1YQRA 3CWSA 3OSMA 1V5SA 1K2YX 3NA5A 1LWWA 1NGMA 3TDHA 5JN5A 1B9KA 1QN6A 3IH7A 2JHJA 3N89A 2EHBD 5F9CA 2PWWA 1C4GA 3OH6A 1QNCA 3I3WA 3KTUA 3I0WA 1VOLB 2QRCA 2QR1A 5IYCP 2HZMA 2Y8LA 1UL7A 4EAGA 1VTOA 1YTFA 3DPUA 1QN3A 5JMVD 1NVPA 2IV8A 2Y8QA 3VN5A 5HSHA 3T4NA 1QTSA 5IYDP 1QN7A 3C04A 2ZFDB 4WXAA 1VTLE 4PY5A 2D0BA
chains in the Genus database with same CATH topology
2H4LX 1TUOA 1C47A 1PCJX 3UW2A 1PCMX 4IL8A 3PDKA 3PMGA 1K2YX 3NA5A 1WJWA 2H5AX 1WQAA 4MRQA 1VKLA 5JN5A 5BMNA 2JPIA 1KFIA 1LXTA 2DKCA 5F9CA 1C4GA 3ENOC 5BMPA 2FUVA 3I3WA 2F7LA 2DKDA 5EPCA 3ENCA 2FKMX 1P5GX 2Z0FA 1KFQA 3RSMA 3BKQX 4HJHA 5JMVD 1K35A 3OLPA 5HSHA 1P5DX 1JDYA 2FKFA 4QG5A 4BJUA 2DKAA 3C04A 4WXAA 4WX8A 5KL0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H4L X;  1TUO A;  1C47 A;  1PCJ X;  3UW2 A;  1PCM X;  4IL8 A;  3PDK A;  3PMG A;  1K2Y X;  3NA5 A;  1WJW A;  2H5A X;  1WQA A;  4MRQ A;  1VKL A;  5JN5 A;  5BMN A;  2JPI A;  1KFI A;  1LXT A;  2DKC A;  5F9C A;  1C4G A;  3ENO C;  5BMP A;  2FUV A;  3I3W A;  2F7L A;  2DKD A;  5EPC A;  3ENC A;  2FKM X;  1P5G X;  2Z0F A;  1KFQ A;  3RSM A;  3BKQ X;  4HJH A;  5JMV D;  1K35 A;  3OLP A;  5HSH A;  1P5D X;  1JDY A;  2FKF A;  4QG5 A;  4BJU A;  2DKA A;  3C04 A;  4WXA A;  4WX8 A;  5KL0 A; 
#chains in the Genus database with same CATH topology
 1KYF A;  1TBA B;  2D0C A;  2OOY A;  2IV9 A;  1QN5 A;  1PCM X;  2NOZ A;  1KY6 A;  3PMG A;  3OSE A;  3CW7 A;  1QN9 A;  2QLV A;  5BMN A;  3DPT A;  4EAJ A;  1LXT A;  1M3H A;  1C9B B;  1J3M A;  4EJZ A;  1YQM A;  1KYU A;  2V8Q A;  2F7L A;  4EAK A;  3OGD A;  3OH9 A;  2G30 A;  3ENC A;  1LWY A;  2NOL A;  4EAI A;  1M3Q A;  2QRE A;  1JFI C;  2MZ8 A;  1PCZ A;  3BKQ X;  3OST A;  4HJH A;  1AIS A;  1N39 A;  1N3C A;  2V9J A;  1EBM A;  4Q11 A;  2NOI A;  4D7Q A;  5AN4 A;  1Q9U A;  1R4X A;  4BJU A;  2JHN A;  4B0A A;  1M5Q 1;  3H1Z A;  2LAE A;  1DIZ A;  2H4L X;  1C47 A;  3UW2 A;  1E42 A;  1PZD A;  1UT7 A;  2OOX A;  2NWV A;  4I8O A;  4IL8 A;  4TPS A;  2HZS A;  1RM1 A;  3SNS A;  2HKP A;  4MRQ A;  1VKL A;  3HS9 A;  3EAY A;  4D7R A;  2R5X A;  2HL8 A;  3I0X A;  1QNB A;  1KY7 A;  1KFI A;  2QRD A;  2NOE A;  2HL9 A;  3ENO C;  3OC3 C;  3CWU A;  5BMP A;  2FUV A;  4DUL A;  3EIK A;  4EJY A;  2DKD A;  2YA3 A;  1CDW A;  1XSZ A;  4ROE B;  3HS8 A;  3CWA A;  1P5G X;  3KRM A;  2XHI A;  3OCI A;  2O3O A;  3CWT A;  2NLV A;  1PVS A;  1HU0 A;  1T6A A;  3OLP A;  1KO9 A;  1P5D X;  2FKF A;  4C7P A;  1MPG A;  5IYB P;  2DKA A;  1VOK A;  3RPJ A;  4WX8 A;  1D3U A;  1QN8 A;  1PCJ X;  1YTB A;  3PDK A;  1WJW A;  2H5A X;  1EUV A;  1WQA A;  1MP9 A;  4EAL A;  2VJ0 A;  3CVS A;  1QNE A;  2JPI A;  2JOI A;  2DKC A;  2NOF A;  1QN4 A;  1W80 A;  2NOH A;  2Z8U A;  2NOB A;  4CFF A;  2D0A A;  5EPC A;  1FN7 A;  3F10 A;  2FKM X;  1KYD A;  1N3A A;  1TGH A;  3D7Q A;  2Z0F A;  1KFQ A;  2NVM A;  3RSM A;  3CVT A;  4ROD B;  2V92 A;  3ASM A;  3ULX A;  2MJ7 A;  1K35 A;  3TE5 A;  1YQK A;  1JDY A;  4ROC B;  4QG5 A;  1UT4 A;  1NH2 A;  1TBP A;  1QTP A;  1YQL A;  3F0Z A;  5KL0 A;  2FGT A;  1LWV A;  1QNA A;  2I5W A;  1TUO A;  2YH5 A;  4WZS D;  3D4V A;  1YQR A;  3CWS A;  3OSM A;  1V5S A;  1K2Y X;  3NA5 A;  1LWW A;  1NGM A;  3TDH A;  5JN5 A;  1B9K A;  1QN6 A;  3IH7 A;  2JHJ A;  3N89 A;  2EHB D;  5F9C A;  2PWW A;  1C4G A;  3OH6 A;  1QNC A;  3I3W A;  3KTU A;  3I0W A;  1VOL B;  2QRC A;  2QR1 A;  5IYC P;  2HZM A;  2Y8L A;  1UL7 A;  4EAG A;  1VTO A;  1YTF A;  3DPU A;  1QN3 A;  5JMV D;  1NVP A;  2IV8 A;  2Y8Q A;  3VN5 A;  5HSH A;  3T4N A;  1QTS A;  5IYD P;  1QN7 A;  3C04 A;  2ZFD B;  4WXA A;  1VTL E;  4PY5 A;  2D0B A; 
#chains in the Genus database with same CATH homology
 2H4L X;  1TUO A;  1C47 A;  1PCJ X;  3UW2 A;  1PCM X;  4IL8 A;  3PDK A;  3PMG A;  1K2Y X;  3NA5 A;  1WJW A;  2H5A X;  1WQA A;  4MRQ A;  1VKL A;  5JN5 A;  5BMN A;  2JPI A;  1KFI A;  1LXT A;  2DKC A;  5F9C A;  1C4G A;  3ENO C;  5BMP A;  2FUV A;  3I3W A;  2F7L A;  2DKD A;  5EPC A;  3ENC A;  2FKM X;  1P5G X;  2Z0F A;  1KFQ A;  3RSM A;  3BKQ X;  4HJH A;  5JMV D;  1K35 A;  3OLP A;  5HSH A;  1P5D X;  1JDY A;  2FKF A;  4QG5 A;  4BJU A;  2DKA A;  3C04 A;  4WXA A;  4WX8 A;  5KL0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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