2NLVA

Crystal structure of a xisi-like protein (ava_3825) from anabaena variabilis atcc 29413 at 1.30 a resolution
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
112
structure length
112
Chain Sequence
GMDKLVKYQELVKKLLTNYASDDVSDQDVEVQLILDTERNHYQWMNVGWQGLNRIYRCVIHFDIKDGKIWLQQNLTDRNPAEELVMMGVPREDIVLGLQAPYKRQYTDYGVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords XisI protein-like
publication title Site-specific recombination of nitrogen-fixation genes in cyanobacteria by XisF-XisH-XisI complex: Structures and models.
pubmed doi rcsb
source organism Anabaena variabilis
total genus 34
structure length 112
sequence length 112
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08869 XisI XisI protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.110 Alpha Beta 2-Layer Sandwich TATA-Binding Protein XisI-like 2nlvA00
2NWVA 3D7QA 2NLVA 2NVMA
chains in the Genus database with same CATH superfamily
1UT4A 2OOXA 3VN5A 1YTBA 1R4XA 2MJ7A 1FN7A 4TPSA 1NH2A 4HJHA 2NOFA 2D0CA 5IYBP 1RM1A 3H1ZA 1QTSA 2HKPA 1J3MA 5JMVD 3RPJA 4ROEB 1VTOA 2JOIA 2Z0FA 3D4VA 3OH9A 1JFIC 3BKQX 1N39A 1QTPA 1WJWA 1TUOA 1QN7A 1TGHA 1LXTA 1K35A 1V5SA 4B0AA 1QNBA 3SNSA 1QN4A 1YQKA 1DIZA 4D7RA 3ASMA 2I5WA 1EBMA 2YA3A 2IV8A 1KY7A 1QNAA 1EUVA 1XSZA 4EAKA 1UL7A 2JHJA 4EALA 2FKFA 1PCMX 3DPTA 3OSEA 1K2YX 2LAEA 3OGDA 3T4NA 2XHIA 1NVPA 2NOBA 1KFIA 3OC3C 1W80A 1LWVA 4WX8A 2EHBD 4EJYA 2O3OA 4IL8A 1KFQA 4EJZA 2NOLA 5AN4A 3F10A 1Q9UA 3EAYA 3KRMA 3I0XA 1VKLA 1UT7A 3HS8A 2NWVA 2YH5A 5JN5A 2PWWA 2R5XA 3TDHA 1NGMA 2FUVA 2FGTA 4Q11A 1VOLB 3CWAA 3ULXA 2VJ0A 3OLPA 1VOKA 3HS9A 1LWYA 3I3WA 3CWTA 3OSMA 1QN3A 3F0ZA 3PDKA 1N3AA 2G30A 1M3HA 3OSTA 1QN9A 2D0BA 1WQAA 1TBAB 4C7PA 2HZMA 4WZSD 3CWUA 4D7QA 1C9BB 3D7QA 1TBPA 2Y8QA 3NA5A 4DULA 1QNCA 3CWSA 1YTFA 1KYFA 2QLVA 1N3CA 3OH6A 1C4GA 1C47A 4I8OA 5IYDP 1PVSA 1QN8A 1T6AA 2H4LX 2NLVA 2NOEA 4EAGA 2NOZA 2JHNA 3DPUA 2NOHA 5IYCP 2HZSA 1YQRA 1MP9A 2JPIA 2DKDA 1PZDA 2QRDA 1AISA 2QRCA 1P5DX 3UW2A 2NVMA 1PCJX 4CFFA 2NOIA 1PCZA 1MPGA 4PY5A 4ROCB 1YQMA 1QN6A 2DKCA 1KYUA 2V92A 3OCIA 4MRQA 3I0WA 1QN5A 1QNEA 2HL8A 2ZFDB 1KO9A 3ENCA 3TE5A 2V8QA 3KTUA 2OOYA 1E42A 2IV9A 2MZ8A 4EAIA 2H5AX 4BJUA 3CVSA 4EAJA 3EIKA 2F7LA 2V9JA 4QG5A 5BMPA 2Z8UA 5BMNA 1YQLA 1HU0A 3C04A 2D0AA 5F9CA 1M3QA 1KYDA 1LWWA 4WXAA 1JDYA 5EPCA 3RSMA 1B9KA 5HSHA 3PMGA 2Y8LA 2DKAA 3CVTA 2FKMX 3N89A 1P5GX 4RODB 3IH7A 2HL9A 3CW7A 2QR1A 5KL0A 1M5Q1 1KY6A 2QREA 1VTLE 1D3UA 1CDWA 3ENOC
chains in the Genus database with same CATH topology
2NWVA 3D7QA 2NLVA 2NVMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NWV A;  3D7Q A;  2NLV A;  2NVM A; 
#chains in the Genus database with same CATH topology
 1UT4 A;  2OOX A;  3VN5 A;  1YTB A;  1R4X A;  2MJ7 A;  1FN7 A;  4TPS A;  1NH2 A;  4HJH A;  2NOF A;  2D0C A;  5IYB P;  1RM1 A;  3H1Z A;  1QTS A;  2HKP A;  1J3M A;  5JMV D;  3RPJ A;  4ROE B;  1VTO A;  2JOI A;  2Z0F A;  3D4V A;  3OH9 A;  1JFI C;  3BKQ X;  1N39 A;  1QTP A;  1WJW A;  1TUO A;  1QN7 A;  1TGH A;  1LXT A;  1K35 A;  1V5S A;  4B0A A;  1QNB A;  3SNS A;  1QN4 A;  1YQK A;  1DIZ A;  4D7R A;  3ASM A;  2I5W A;  1EBM A;  2YA3 A;  2IV8 A;  1KY7 A;  1QNA A;  1EUV A;  1XSZ A;  4EAK A;  1UL7 A;  2JHJ A;  4EAL A;  2FKF A;  1PCM X;  3DPT A;  3OSE A;  1K2Y X;  2LAE A;  3OGD A;  3T4N A;  2XHI A;  1NVP A;  2NOB A;  1KFI A;  3OC3 C;  1W80 A;  1LWV A;  4WX8 A;  2EHB D;  4EJY A;  2O3O A;  4IL8 A;  1KFQ A;  4EJZ A;  2NOL A;  5AN4 A;  3F10 A;  1Q9U A;  3EAY A;  3KRM A;  3I0X A;  1VKL A;  1UT7 A;  3HS8 A;  2NWV A;  2YH5 A;  5JN5 A;  2PWW A;  2R5X A;  3TDH A;  1NGM A;  2FUV A;  2FGT A;  4Q11 A;  1VOL B;  3CWA A;  3ULX A;  2VJ0 A;  3OLP A;  1VOK A;  3HS9 A;  1LWY A;  3I3W A;  3CWT A;  3OSM A;  1QN3 A;  3F0Z A;  3PDK A;  1N3A A;  2G30 A;  1M3H A;  3OST A;  1QN9 A;  2D0B A;  1WQA A;  1TBA B;  4C7P A;  2HZM A;  4WZS D;  3CWU A;  4D7Q A;  1C9B B;  3D7Q A;  1TBP A;  2Y8Q A;  3NA5 A;  4DUL A;  1QNC A;  3CWS A;  1YTF A;  1KYF A;  2QLV A;  1N3C A;  3OH6 A;  1C4G A;  1C47 A;  4I8O A;  5IYD P;  1PVS A;  1QN8 A;  1T6A A;  2H4L X;  2NLV A;  2NOE A;  4EAG A;  2NOZ A;  2JHN A;  3DPU A;  2NOH A;  5IYC P;  2HZS A;  1YQR A;  1MP9 A;  2JPI A;  2DKD A;  1PZD A;  2QRD A;  1AIS A;  2QRC A;  1P5D X;  3UW2 A;  2NVM A;  1PCJ X;  4CFF A;  2NOI A;  1PCZ A;  1MPG A;  4PY5 A;  4ROC B;  1YQM A;  1QN6 A;  2DKC A;  1KYU A;  2V92 A;  3OCI A;  4MRQ A;  3I0W A;  1QN5 A;  1QNE A;  2HL8 A;  2ZFD B;  1KO9 A;  3ENC A;  3TE5 A;  2V8Q A;  3KTU A;  2OOY A;  1E42 A;  2IV9 A;  2MZ8 A;  4EAI A;  2H5A X;  4BJU A;  3CVS A;  4EAJ A;  3EIK A;  2F7L A;  2V9J A;  4QG5 A;  5BMP A;  2Z8U A;  5BMN A;  1YQL A;  1HU0 A;  3C04 A;  2D0A A;  5F9C A;  1M3Q A;  1KYD A;  1LWW A;  4WXA A;  1JDY A;  5EPC A;  3RSM A;  1B9K A;  5HSH A;  3PMG A;  2Y8L A;  2DKA A;  3CVT A;  2FKM X;  3N89 A;  1P5G X;  4ROD B;  3IH7 A;  2HL9 A;  3CW7 A;  2QR1 A;  5KL0 A;  1M5Q 1;  1KY6 A;  2QRE A;  1VTL E;  1D3U A;  1CDW A;  3ENO C; 
#chains in the Genus database with same CATH homology
 2NWV A;  3D7Q A;  2NLV A;  2NVM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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