4TPSA

Sporulation inhibitor of dna replication, sira, in complex with domain i of dnaa
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
140
structure length
140
Chain Sequence
ERHYYTYLIKEEFANHYFGRESVMFELFQDYHWTSLEKQQYEMTEKQIQYITQPIPILHMHQRLKMNLNKTDYRQLDYIYRIALPKAKGHATFMMKEHMIEIVASGDYEAETIFFEVLRKVSPCFLAMDFNSKRYGWLNP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication
source organism Bacillus subtilis
publication title Structure and interactions of the Bacillus subtilis sporulation inhibitor of DNA replication, SirA, with domain I of DnaA.
pubmed doi rcsb
molecule keywords Sporulation inhibitor of replication protein SirA
total genus 44
structure length 140
sequence length 140
chains with identical sequence C
ec nomenclature
pdb deposition date 2014-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10747 SirA Sporulation inhibitor of replication protein SirA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.250 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 4tpsA00
4TPSA
chains in the Genus database with same CATH superfamily
3TDHA 5EPCA 2JOIA 3ENCA 1MPGA 3HS8A 2HZMA 3KTUA 1C47A 3HS9A 3CWSA 2H5AX 1EUVA 4EAIA 2XHIA 3CVTA 1JFIC 1TBPA 1K35A 2ZFDB 2V8QA 5BMNA 1C9BB 1QTPA 4EJYA 5KL0A 2QRCA 2VJ0A 3VN5A 1NVPA 3OCIA 1WQAA 2NLVA 1B9KA 3CWUA 5HSHA 3PMGA 3D4VA 1V5SA 1QNBA 3F10A 4QG5A 4WXAA 1NGMA 1KYFA 1KFIA 4PY5A 4WX8A 1M5Q1 1VKLA 4EAKA 2G30A 2EHBD 3OSTA 1N39A 4TPSA 2QLVA 2O3OA 1M3HA 1QTSA 2MZ8A 1R4XA 2V9JA 1Q9UA 1XSZA 1FN7A 2JHJA 1YTBA 3D7QA 1QN9A 5IYCP 4DULA 3OSEA 1TGHA 2NOLA 3I0XA 5AN4A 1VTLE 2QRDA 4RODB 1DIZA 1KYDA 1C4GA 2NOIA 2IV8A 1TUOA 2IV9A 1LWWA 3T4NA 3OLPA 1VOLB 1CDWA 1YQMA 3CW7A 1YQKA 3I3WA 1QNAA 5JMVD 3CWAA 3RPJA 1NH2A 4IL8A 2NOEA 3CWTA 1QN5A 1P5DX 1TBAB 4EAJA 2OOYA 2Y8LA 2D0BA 1KYUA 1QNEA 3N89A 2HKPA 5BMPA 2DKDA 5IYBP 2YH5A 4Q11A 3OH6A 1N3AA 4BJUA 1YQLA 3C04A 3OC3C 1QNCA 2NOBA 2R5XA 4EAGA 2NOFA 2QREA 2NOHA 2MJ7A 1QN8A 2D0CA 2FGTA 3OGDA 2Z8UA 3BKQX 3EAYA 4C7PA 1AISA 4I8OA 2OOXA 2HZSA 4CFFA 1LWYA 1RM1A 1WJWA 2HL8A 2FKMX 2NWVA 3IH7A 2LAEA 1KFQA 1VOKA 1J3MA 1P5GX 2V92A 1JDYA 1PZDA 1UT4A 2PWWA 1KY7A 3F0ZA 1T6AA 1PCMX 3EIKA 1UT7A 4WZSD 2FUVA 1W80A 4EALA 2FKFA 1KY6A 3KRMA 1HU0A 3ULXA 1PCZA 2Y8QA 4MRQA 4ROCB 1VTOA 2D0AA 3PDKA 2Z0FA 4ROEB 2QR1A 1K2YX 3RSMA 4D7QA 4HJHA 2DKCA 2F7LA 1LXTA 3DPUA 1EBMA 1YTFA 4B0AA 2DKAA 1YQRA 3OSMA 3ENOC 2I5WA 3I0WA 2NOZA 5IYDP 5JN5A 1QN4A 3UW2A 1KO9A 1UL7A 2YA3A 3H1ZA 1D3UA 1QN7A 3ASMA 3DPTA 1E42A 3SNSA 3CVSA 2H4LX 3TE5A 1PCJX 3OH9A 4D7RA 1QN3A 2HL9A 1PVSA 4EJZA 2JPIA 2JHNA 1M3QA 2NVMA 1N3CA 1LWVA 1MP9A 1QN6A 5F9CA 3NA5A
chains in the Genus database with same CATH topology
2JOIA 3HS8A 2HZMA 3KTUA 3HS9A 2XHIA 1JFIC 1TBPA 4EJYA 1C9BB 1QTPA 3VN5A 2VJ0A 1NVPA 3OCIA 1B9KA 1QNBA 3F10A 1NGMA 1KYFA 4PY5A 2G30A 3OSTA 1N39A 4TPSA 2O3OA 1M3HA 1QTSA 2MZ8A 1R4XA 1FN7A 1YTBA 1QN9A 5IYCP 4DULA 1TGHA 2NOLA 3I0XA 5AN4A 1VTLE 4RODB 1KYDA 2NOIA 2IV8A 2IV9A 1LWWA 1VOLB 1CDWA 1YQMA 1YQKA 1QNAA 3RPJA 1NH2A 2NOEA 1QN5A 1TBAB 2D0BA 1KYUA 1QNEA 3N89A 1N3AA 5IYBP 2YH5A 4Q11A 1YQLA 3OC3C 1QNCA 2NOBA 2NOFA 2NOHA 2MJ7A 1QN8A 2D0CA 2FGTA 2Z8UA 1AISA 4I8OA 2HZSA 1LWYA 1RM1A 3IH7A 2LAEA 1VOKA 1UT4A 1PZDA 3F0ZA 1KY7A 3EIKA 1UT7A 4WZSD 1W80A 1KY6A 3KRMA 1HU0A 3ULXA 1PCZA 4ROCB 1VTOA 2D0AA 4ROEB 3DPUA 1EBMA 1YTFA 4B0AA 1YQRA 3OSMA 2I5WA 3I0WA 2NOZA 5IYDP 1QN4A 1KO9A 3H1ZA 1D3UA 1QN7A 3ASMA 3DPTA 1E42A 3SNSA 1QN3A 4EJZA 1M3QA 1N3CA 1LWVA 1MP9A 1QN6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TPS A; 
#chains in the Genus database with same CATH topology
 3TDH A;  5EPC A;  2JOI A;  3ENC A;  1MPG A;  3HS8 A;  2HZM A;  3KTU A;  1C47 A;  3HS9 A;  3CWS A;  2H5A X;  1EUV A;  4EAI A;  2XHI A;  3CVT A;  1JFI C;  1TBP A;  1K35 A;  2ZFD B;  2V8Q A;  5BMN A;  1C9B B;  1QTP A;  4EJY A;  5KL0 A;  2QRC A;  2VJ0 A;  3VN5 A;  1NVP A;  3OCI A;  1WQA A;  2NLV A;  1B9K A;  3CWU A;  5HSH A;  3PMG A;  3D4V A;  1V5S A;  1QNB A;  3F10 A;  4QG5 A;  4WXA A;  1NGM A;  1KYF A;  1KFI A;  4PY5 A;  4WX8 A;  1M5Q 1;  1VKL A;  4EAK A;  2G30 A;  2EHB D;  3OST A;  1N39 A;  4TPS A;  2QLV A;  2O3O A;  1M3H A;  1QTS A;  2MZ8 A;  1R4X A;  2V9J A;  1Q9U A;  1XSZ A;  1FN7 A;  2JHJ A;  1YTB A;  3D7Q A;  1QN9 A;  5IYC P;  4DUL A;  3OSE A;  1TGH A;  2NOL A;  3I0X A;  5AN4 A;  1VTL E;  2QRD A;  4ROD B;  1DIZ A;  1KYD A;  1C4G A;  2NOI A;  2IV8 A;  1TUO A;  2IV9 A;  1LWW A;  3T4N A;  3OLP A;  1VOL B;  1CDW A;  1YQM A;  3CW7 A;  1YQK A;  3I3W A;  1QNA A;  5JMV D;  3CWA A;  3RPJ A;  1NH2 A;  4IL8 A;  2NOE A;  3CWT A;  1QN5 A;  1P5D X;  1TBA B;  4EAJ A;  2OOY A;  2Y8L A;  2D0B A;  1KYU A;  1QNE A;  3N89 A;  2HKP A;  5BMP A;  2DKD A;  5IYB P;  2YH5 A;  4Q11 A;  3OH6 A;  1N3A A;  4BJU A;  1YQL A;  3C04 A;  3OC3 C;  1QNC A;  2NOB A;  2R5X A;  4EAG A;  2NOF A;  2QRE A;  2NOH A;  2MJ7 A;  1QN8 A;  2D0C A;  2FGT A;  3OGD A;  2Z8U A;  3BKQ X;  3EAY A;  4C7P A;  1AIS A;  4I8O A;  2OOX A;  2HZS A;  4CFF A;  1LWY A;  1RM1 A;  1WJW A;  2HL8 A;  2FKM X;  2NWV A;  3IH7 A;  2LAE A;  1KFQ A;  1VOK A;  1J3M A;  1P5G X;  2V92 A;  1JDY A;  1PZD A;  1UT4 A;  2PWW A;  1KY7 A;  3F0Z A;  1T6A A;  1PCM X;  3EIK A;  1UT7 A;  4WZS D;  2FUV A;  1W80 A;  4EAL A;  2FKF A;  1KY6 A;  3KRM A;  1HU0 A;  3ULX A;  1PCZ A;  2Y8Q A;  4MRQ A;  4ROC B;  1VTO A;  2D0A A;  3PDK A;  2Z0F A;  4ROE B;  2QR1 A;  1K2Y X;  3RSM A;  4D7Q A;  4HJH A;  2DKC A;  2F7L A;  1LXT A;  3DPU A;  1EBM A;  1YTF A;  4B0A A;  2DKA A;  1YQR A;  3OSM A;  3ENO C;  2I5W A;  3I0W A;  2NOZ A;  5IYD P;  5JN5 A;  1QN4 A;  3UW2 A;  1KO9 A;  1UL7 A;  2YA3 A;  3H1Z A;  1D3U A;  1QN7 A;  3ASM A;  3DPT A;  1E42 A;  3SNS A;  3CVS A;  2H4L X;  3TE5 A;  1PCJ X;  3OH9 A;  4D7R A;  1QN3 A;  2HL9 A;  1PVS A;  4EJZ A;  2JPI A;  2JHN A;  1M3Q A;  2NVM A;  1N3C A;  1LWV A;  1MP9 A;  1QN6 A;  5F9C A;  3NA5 A; 
#chains in the Genus database with same CATH homology
 2JOI A;  3HS8 A;  2HZM A;  3KTU A;  3HS9 A;  2XHI A;  1JFI C;  1TBP A;  4EJY A;  1C9B B;  1QTP A;  3VN5 A;  2VJ0 A;  1NVP A;  3OCI A;  1B9K A;  1QNB A;  3F10 A;  1NGM A;  1KYF A;  4PY5 A;  2G30 A;  3OST A;  1N39 A;  4TPS A;  2O3O A;  1M3H A;  1QTS A;  2MZ8 A;  1R4X A;  1FN7 A;  1YTB A;  1QN9 A;  5IYC P;  4DUL A;  1TGH A;  2NOL A;  3I0X A;  5AN4 A;  1VTL E;  4ROD B;  1KYD A;  2NOI A;  2IV8 A;  2IV9 A;  1LWW A;  1VOL B;  1CDW A;  1YQM A;  1YQK A;  1QNA A;  3RPJ A;  1NH2 A;  2NOE A;  1QN5 A;  1TBA B;  2D0B A;  1KYU A;  1QNE A;  3N89 A;  1N3A A;  5IYB P;  2YH5 A;  4Q11 A;  1YQL A;  3OC3 C;  1QNC A;  2NOB A;  2NOF A;  2NOH A;  2MJ7 A;  1QN8 A;  2D0C A;  2FGT A;  2Z8U A;  1AIS A;  4I8O A;  2HZS A;  1LWY A;  1RM1 A;  3IH7 A;  2LAE A;  1VOK A;  1UT4 A;  1PZD A;  3F0Z A;  1KY7 A;  3EIK A;  1UT7 A;  4WZS D;  1W80 A;  1KY6 A;  3KRM A;  1HU0 A;  3ULX A;  1PCZ A;  4ROC B;  1VTO A;  2D0A A;  4ROE B;  3DPU A;  1EBM A;  1YTF A;  4B0A A;  1YQR A;  3OSM A;  2I5W A;  3I0W A;  2NOZ A;  5IYD P;  1QN4 A;  1KO9 A;  3H1Z A;  1D3U A;  1QN7 A;  3ASM A;  3DPT A;  1E42 A;  3SNS A;  1QN3 A;  4EJZ A;  1M3Q A;  1N3C A;  1LWV A;  1MP9 A;  1QN6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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