4B0AA

The high-resolution structure of ytbp-ytaf1 identifies conserved and competing interaction surfaces in transcriptional activation
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
256
structure length
237
Chain Sequence
KTNLANEDEAYEAIFGGEFGSLEIGSYIGGDEARNSKDYTEHLPDAVDFEDEDELADDGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title High-Resolution Structure of TBP with Taf1 Reveals Anchoring Patterns in Transcriptional Regulation
pubmed doi rcsb
molecule keywords TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1, LINKER, TAT
total genus 58
structure length 237
sequence length 256
ec nomenclature ec 2.3.1.48: Histone acetyltransferase.
pdb deposition date 2012-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 4b0aA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 4b0aA02
1QN7A 1YTFA 1VOLB 2Z8UA 2D0BA 1KYUA 1TGHA 1CDWA 1E42A 1KY6A 3OCIA 4B0AA 1QN9A 1PZDA 2D0AA 1RM1A 1QTPA 1QN6A 1D3UA 5IYBP 1R4XA 1MP9A 1VOKA 5IYDP 4ROEB 1QN4A 3VN5A 1QNCA 2IV9A 5IYCP 1QNBA 1PCZA 4RODB 3EIKA 2IV8A 1KYFA 1TBAB 1NVPA 1QN5A 3ASMA 2G30A 1QN3A 1QTSA 1QNEA 4PY5A 1NH2A 3H1ZA 3HS9A 1KY7A 3OC3C 1JFIC 1C9BB 1NGMA 1QN8A 1QNAA 2MJ7A 1B9KA 1KYDA 1VTLE 1YTBA 4WZSD 3HS8A 1TBPA 1AISA 2VJ0A 1W80A 4ROCB 1VTOA 2D0CA
chains in the Genus database with same CATH superfamily
3KRMA 1YTFA 2D0BA 1KFIA 1Q9UA 1UL7A 2JHNA 2QLVA 4B0AA 3D4VA 1WJWA 1RM1A 1N39A 3OSTA 5AN4A 1YQKA 1T6AA 1D3UA 3F10A 3CW7A 2FUVA 3OSEA 1YQMA 5IYDP 2HZSA 3VN5A 5IYCP 1QNBA 4WX8A 4RODB 4EJYA 1M3HA 2ZFDB 1DIZA 4CFFA 3I0WA 4I8OA 4TPSA 2DKAA 2JOIA 4DULA 3T4NA 3ASMA 1NVPA 3KTUA 1LWYA 3OSMA 1FN7A 3HS9A 1JFIC 3CWTA 2MJ7A 1TUOA 5JN5A 3HS8A 1M5Q1 1TBPA 2VJ0A 1W80A 1K2YX 1MPGA 1K35A 1P5DX 1JDYA 3DPUA 2H5AX 3ENCA 4D7QA 1VTOA 3OLPA 2NOFA 2O3OA 2PWWA 1KYUA 2FGTA 1TGHA 3OCIA 3D7QA 3EAYA 1XSZA 2NOHA 2NOIA 1PZDA 2YH5A 1C4GA 1QTPA 1VKLA 2HKPA 3BKQX 3NA5A 1R4XA 4IL8A 2JPIA 2QRCA 2NOEA 2NWVA 1KFQA 2HZMA 3EIKA 1C47A 3CWSA 4MRQA 1QN5A 1P5GX 5EPCA 2V9JA 3CWAA 1LWWA 1V5SA 3H1ZA 1KY7A 1QN8A 3RPJA 2JHJA 3UW2A 1B9KA 1N3CA 3OGDA 2XHIA 1VTLE 2QRDA 1EUVA 4EAGA 4WZSD 1YQRA 3ULXA 1YTBA 3OH6A 1N3AA 1CDWA 1HU0A 5BMPA 1LXTA 1QN7A 3TE5A 1VOLB 3F0ZA 2HL9A 1E42A 2NOZA 4EAKA 2Z0FA 4HJHA 2H4LX 5IYBP 4WXAA 2FKFA 2V92A 1VOKA 4QG5A 1QN4A 2NOBA 2HL8A 1QNCA 2QR1A 2IV9A 2YA3A 4EAIA 2F7LA 2Y8QA 3I3WA 1LWVA 2IV8A 3I0XA 1TBAB 2Y8LA 3PDKA 2G30A 2OOXA 4BJUA 1QN3A 3CWUA 3OH9A 3OC3C 1J3MA 2OOYA 1NGMA 3RSMA 1C9BB 1QNAA 3IH7A 1PCMX 1AISA 2V8QA 3CVTA 2D0AA 1PCJX 3N89A 4ROCB 4EJZA 1KYFA 1WQAA 5F9CA 3PMGA 2Z8UA 3DPTA 1KY6A 1UT4A 3SNSA 4Q11A 1QN9A 2NVMA 1QN6A 1MP9A 2QREA 4ROEB 2NLVA 4EALA 1PVSA 2FKMX 1PCZA 1UT7A 2MZ8A 4C7PA 2EHBD 4D7RA 2LAEA 2DKCA 2I5WA 3TDHA 2R5XA 4EAJA 1QTSA 1QNEA 4PY5A 5BMNA 1NH2A 3CVSA 1M3QA 1KO9A 1YQLA 5HSHA 2NOLA 3ENOC 5JMVD 1KYDA 3C04A 1EBMA 2DKDA 5KL0A 2D0CA
chains in the Genus database with same CATH topology
3KRMA 1YTFA 2D0BA 4B0AA 1RM1A 1N39A 3OSTA 5AN4A 1YQKA 1D3UA 3F10A 1YQMA 5IYDP 2HZSA 3VN5A 5IYCP 1QNBA 4RODB 4EJYA 1M3HA 3I0WA 4I8OA 4TPSA 2JOIA 1NVPA 3ASMA 3KTUA 1LWYA 3OSMA 1FN7A 3HS9A 1JFIC 2MJ7A 2D0CA 3HS8A 1TBPA 3DPUA 3IH7A 2VJ0A 1W80A 1VTOA 2NOFA 2O3OA 1TGHA 1KYUA 2FGTA 3OCIA 2NOIA 2NOHA 1PZDA 2YH5A 1QTPA 1R4XA 2NOEA 2HZMA 3EIKA 1QN5A 1LWWA 3H1ZA 1KY7A 1QN8A 3RPJA 1B9KA 1N3CA 2XHIA 1VTLE 1YTBA 1YQRA 4WZSD 3ULXA 1N3AA 1CDWA 1HU0A 1QN7A 1VOLB 3F0ZA 1E42A 2NOZA 5IYBP 1VOKA 1QN4A 2NOBA 1QNCA 2IV9A 1LWVA 2IV8A 3I0XA 1TBAB 2G30A 1QN3A 3OC3C 1C9BB 1NGMA 1QNAA 1AISA 2D0AA 3N89A 4EJZA 4ROCB 1KYFA 2Z8UA 3DPTA 1KY6A 1UT4A 3SNSA 4Q11A 1QN9A 1QN6A 1MP9A 4ROEB 1PCZA 1UT7A 2MZ8A 2LAEA 2I5WA 1QTSA 1QNEA 4PY5A 1NH2A 1M3QA 1KO9A 1YQLA 2NOLA 1KYDA 1EBMA 4DULA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QN7 A;  1YTF A;  1VOL B;  2Z8U A;  2D0B A;  1KYU A;  1TGH A;  1CDW A;  1E42 A;  1KY6 A;  3OCI A;  4B0A A;  1QN9 A;  1PZD A;  2D0A A;  1RM1 A;  1QTP A;  1QN6 A;  1D3U A;  5IYB P;  1R4X A;  1MP9 A;  1VOK A;  5IYD P;  4ROE B;  1QN4 A;  3VN5 A;  1QNC A;  2IV9 A;  5IYC P;  1QNB A;  1PCZ A;  4ROD B;  3EIK A;  2IV8 A;  1KYF A;  1TBA B;  1NVP A;  1QN5 A;  3ASM A;  2G30 A;  1QN3 A;  1QTS A;  1QNE A;  4PY5 A;  1NH2 A;  3H1Z A;  3HS9 A;  1KY7 A;  3OC3 C;  1JFI C;  1C9B B;  1NGM A;  1QN8 A;  1QNA A;  2MJ7 A;  1B9K A;  1KYD A;  1VTL E;  1YTB A;  4WZS D;  3HS8 A;  1TBP A;  1AIS A;  2VJ0 A;  1W80 A;  4ROC B;  1VTO A;  2D0C A; 
#chains in the Genus database with same CATH topology
 3KRM A;  1YTF A;  2D0B A;  1KFI A;  1Q9U A;  1UL7 A;  2JHN A;  2QLV A;  4B0A A;  3D4V A;  1WJW A;  1RM1 A;  1N39 A;  3OST A;  5AN4 A;  1YQK A;  1T6A A;  1D3U A;  3F10 A;  3CW7 A;  2FUV A;  3OSE A;  1YQM A;  5IYD P;  2HZS A;  3VN5 A;  5IYC P;  1QNB A;  4WX8 A;  4ROD B;  4EJY A;  1M3H A;  2ZFD B;  1DIZ A;  4CFF A;  3I0W A;  4I8O A;  4TPS A;  2DKA A;  2JOI A;  4DUL A;  3T4N A;  3ASM A;  1NVP A;  3KTU A;  1LWY A;  3OSM A;  1FN7 A;  3HS9 A;  1JFI C;  3CWT A;  2MJ7 A;  1TUO A;  5JN5 A;  3HS8 A;  1M5Q 1;  1TBP A;  2VJ0 A;  1W80 A;  1K2Y X;  1MPG A;  1K35 A;  1P5D X;  1JDY A;  3DPU A;  2H5A X;  3ENC A;  4D7Q A;  1VTO A;  3OLP A;  2NOF A;  2O3O A;  2PWW A;  1KYU A;  2FGT A;  1TGH A;  3OCI A;  3D7Q A;  3EAY A;  1XSZ A;  2NOH A;  2NOI A;  1PZD A;  2YH5 A;  1C4G A;  1QTP A;  1VKL A;  2HKP A;  3BKQ X;  3NA5 A;  1R4X A;  4IL8 A;  2JPI A;  2QRC A;  2NOE A;  2NWV A;  1KFQ A;  2HZM A;  3EIK A;  1C47 A;  3CWS A;  4MRQ A;  1QN5 A;  1P5G X;  5EPC A;  2V9J A;  3CWA A;  1LWW A;  1V5S A;  3H1Z A;  1KY7 A;  1QN8 A;  3RPJ A;  2JHJ A;  3UW2 A;  1B9K A;  1N3C A;  3OGD A;  2XHI A;  1VTL E;  2QRD A;  1EUV A;  4EAG A;  4WZS D;  1YQR A;  3ULX A;  1YTB A;  3OH6 A;  1N3A A;  1CDW A;  1HU0 A;  5BMP A;  1LXT A;  1QN7 A;  3TE5 A;  1VOL B;  3F0Z A;  2HL9 A;  1E42 A;  2NOZ A;  4EAK A;  2Z0F A;  4HJH A;  2H4L X;  5IYB P;  4WXA A;  2FKF A;  2V92 A;  1VOK A;  4QG5 A;  1QN4 A;  2NOB A;  2HL8 A;  1QNC A;  2QR1 A;  2IV9 A;  2YA3 A;  4EAI A;  2F7L A;  2Y8Q A;  3I3W A;  1LWV A;  2IV8 A;  3I0X A;  1TBA B;  2Y8L A;  3PDK A;  2G30 A;  2OOX A;  4BJU A;  1QN3 A;  3CWU A;  3OH9 A;  3OC3 C;  1J3M A;  2OOY A;  1NGM A;  3RSM A;  1C9B B;  1QNA A;  3IH7 A;  1PCM X;  1AIS A;  2V8Q A;  3CVT A;  2D0A A;  1PCJ X;  3N89 A;  4ROC B;  4EJZ A;  1KYF A;  1WQA A;  5F9C A;  3PMG A;  2Z8U A;  3DPT A;  1KY6 A;  1UT4 A;  3SNS A;  4Q11 A;  1QN9 A;  2NVM A;  1QN6 A;  1MP9 A;  2QRE A;  4ROE B;  2NLV A;  4EAL A;  1PVS A;  2FKM X;  1PCZ A;  1UT7 A;  2MZ8 A;  4C7P A;  2EHB D;  4D7R A;  2LAE A;  2DKC A;  2I5W A;  3TDH A;  2R5X A;  4EAJ A;  1QTS A;  1QNE A;  4PY5 A;  5BMN A;  1NH2 A;  3CVS A;  1M3Q A;  1KO9 A;  1YQL A;  5HSH A;  2NOL A;  3ENO C;  5JMV D;  1KYD A;  3C04 A;  1EBM A;  2DKD A;  5KL0 A;  2D0C A; 
#chains in the Genus database with same CATH homology
 3KRM A;  1YTF A;  2D0B A;  4B0A A;  1RM1 A;  1N39 A;  3OST A;  5AN4 A;  1YQK A;  1D3U A;  3F10 A;  1YQM A;  5IYD P;  2HZS A;  3VN5 A;  5IYC P;  1QNB A;  4ROD B;  4EJY A;  1M3H A;  3I0W A;  4I8O A;  4TPS A;  2JOI A;  1NVP A;  3ASM A;  3KTU A;  1LWY A;  3OSM A;  1FN7 A;  3HS9 A;  1JFI C;  2MJ7 A;  2D0C A;  3HS8 A;  1TBP A;  3DPU A;  3IH7 A;  2VJ0 A;  1W80 A;  1VTO A;  2NOF A;  2O3O A;  1TGH A;  1KYU A;  2FGT A;  3OCI A;  2NOI A;  2NOH A;  1PZD A;  2YH5 A;  1QTP A;  1R4X A;  2NOE A;  2HZM A;  3EIK A;  1QN5 A;  1LWW A;  3H1Z A;  1KY7 A;  1QN8 A;  3RPJ A;  1B9K A;  1N3C A;  2XHI A;  1VTL E;  1YTB A;  1YQR A;  4WZS D;  3ULX A;  1N3A A;  1CDW A;  1HU0 A;  1QN7 A;  1VOL B;  3F0Z A;  1E42 A;  2NOZ A;  5IYB P;  1VOK A;  1QN4 A;  2NOB A;  1QNC A;  2IV9 A;  1LWV A;  2IV8 A;  3I0X A;  1TBA B;  2G30 A;  1QN3 A;  3OC3 C;  1C9B B;  1NGM A;  1QNA A;  1AIS A;  2D0A A;  3N89 A;  4EJZ A;  4ROC B;  1KYF A;  2Z8U A;  3DPT A;  1KY6 A;  1UT4 A;  3SNS A;  4Q11 A;  1QN9 A;  1QN6 A;  1MP9 A;  4ROE B;  1PCZ A;  1UT7 A;  2MZ8 A;  2LAE A;  2I5W A;  1QTS A;  1QNE A;  4PY5 A;  1NH2 A;  1M3Q A;  1KO9 A;  1YQL A;  2NOL A;  1KYD A;  1EBM A;  4DUL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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