2LAEA

Nmr solution structure of the c-terminal domain of the e. coli lipoprotein bamc
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
118
structure length
118
Chain Sequence
DVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFSKPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein
source organism Escherichia coli
publication title Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set.
pubmed doi rcsb
molecule keywords Lipoprotein 34
total genus 27
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2011-03-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.170 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 2laeA00
2YH5A 3SNSA 2LAEA
chains in the Genus database with same CATH superfamily
2V9JA 2R5XA 3DPUA 3HS9A 3OSMA 2YA3A 5IYCP 2HL9A 2NOBA 4DULA 5JN5A 1K35A 3OSTA 4MRQA 2HZMA 1V5SA 2LAEA 1KYFA 1R4XA 5IYBP 4Q11A 4RODB 4QG5A 2H4LX 3OC3C 1C9BB 2JHJA 3OH6A 1YQMA 1CDWA 1N39A 1P5GX 1QNBA 3I0XA 1MPGA 1LXTA 2JPIA 2YH5A 1QN5A 1LWWA 2NOZA 2NVMA 3ASMA 3UW2A 1KYDA 3TE5A 2VJ0A 1QN9A 1HU0A 3D4VA 2QRCA 2OOXA 2MZ8A 3OLPA 1WJWA 1VKLA 2HZSA 3CW7A 3I0WA 1YQRA 3F0ZA 1N3CA 1KO9A 3ENOC 3ENCA 3ULXA 1NGMA 4ROEB 1VTOA 4CFFA 3OGDA 1UT4A 2QREA 4WZSD 2NOLA 2F7LA 3EIKA 1TGHA 4WXAA 4WX8A 1VTLE 3CVTA 1YQLA 1C4GA 2V8QA 2DKDA 2NLVA 3IH7A 1YTBA 2FGTA 3N89A 5AN4A 2PWWA 5EPCA 3KRMA 1PVSA 4D7RA 1KFIA 3CWUA 2DKCA 2D0CA 1PCMX 2D0BA 3RPJA 3PDKA 1QN6A 1EBMA 1T6AA 1YQKA 1QNCA 2DKAA 1M3QA 1LWVA 4BJUA 5HSHA 5KL0A 2D0AA 2Z8UA 3VN5A 1UT7A 3C04A 2Y8QA 4B0AA 4EAIA 2XHIA 4TPSA 3F10A 2MJ7A 1JFIC 5BMPA 1K2YX 2Y8LA 1KY6A 4IL8A 1QTPA 1W80A 1M5Q1 1PCJX 4EAJA 4C7PA 1LWYA 2H5AX 1J3MA 4PY5A 3OH9A 1PCZA 2V92A 2OOYA 1FN7A 2O3OA 3BKQX 5JMVD 1QN4A 4EJYA 1VOKA 4EALA 1QN3A 1VOLB 1E42A 2QRDA 3T4NA 4EAGA 5IYDP 4EAKA 1M3HA 3CWTA 4HJHA 1KFQA 1EUVA 1D3UA 1YTFA 2FKMX 3DPTA 1KY7A 1JDYA 2IV8A 3SNSA 1AISA 2NOHA 2JHNA 1QNAA 2I5WA 2JOIA 1TBAB 1WQAA 1B9KA 1NVPA 2HKPA 3HS8A 1UL7A 3H1ZA 1QNEA 1TBPA 1NH2A 2NOFA 4ROCB 4I8OA 3CWSA 1MP9A 3EAYA 2G30A 1QN8A 3OCIA 3RSMA 2QLVA 2FUVA 2HL8A 2ZFDB 5BMNA 2IV9A 1RM1A 1TUOA 3CWAA 1DIZA 2NOIA 1KYUA 3NA5A 3KTUA 1XSZA 3OSEA 2FKFA 1PZDA 3D7QA 3PMGA 1N3AA 2NOEA 1P5DX 2Z0FA 3I3WA 1QN7A 1QTSA 2QR1A 1Q9UA 4D7QA 2NWVA 2EHBD 3TDHA 3CVSA 1C47A 5F9CA 4EJZA
chains in the Genus database with same CATH topology
3DPUA 3HS9A 3OSMA 5IYCP 2NOBA 4DULA 3OSTA 2HZMA 2LAEA 1KYFA 1R4XA 5IYBP 4Q11A 4RODB 3OC3C 1C9BB 1YQMA 1CDWA 1N39A 1QNBA 3I0XA 1QN5A 2YH5A 1LWWA 2NOZA 3ASMA 1KYDA 2VJ0A 1QN9A 1HU0A 2MZ8A 2HZSA 3I0WA 1YQRA 3F0ZA 1N3CA 1KO9A 3ULXA 1NGMA 4ROEB 1VTOA 1UT4A 4WZSD 2NOLA 3EIKA 1TGHA 1VTLE 1YQLA 3IH7A 1YTBA 2FGTA 3N89A 5AN4A 3KRMA 2D0CA 2D0BA 3RPJA 1EBMA 1YQKA 1QNCA 1M3QA 1LWVA 2D0AA 2Z8UA 3VN5A 1UT7A 2XHIA 1QN6A 4B0AA 4TPSA 3F10A 2MJ7A 1JFIC 1KY6A 1QTPA 1W80A 1LWYA 4PY5A 1PCZA 1FN7A 4EJYA 2O3OA 1QN4A 1VOKA 1QN3A 1VOLB 1E42A 5IYDP 1M3HA 1D3UA 1YTFA 3DPTA 1KY7A 2IV8A 3SNSA 1AISA 2NOHA 1QNAA 2I5WA 2JOIA 1TBAB 1NVPA 1B9KA 3HS8A 3H1ZA 1QNEA 2NOFA 1TBPA 1NH2A 4ROCB 4I8OA 1MP9A 2G30A 1QN8A 3OCIA 1RM1A 2IV9A 2NOIA 1KYUA 3KTUA 1PZDA 1N3AA 2NOEA 1QN7A 1QTSA 4EJZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YH5 A;  3SNS A;  2LAE A; 
#chains in the Genus database with same CATH topology
 2V9J A;  2R5X A;  3DPU A;  3HS9 A;  3OSM A;  2YA3 A;  5IYC P;  2HL9 A;  2NOB A;  4DUL A;  5JN5 A;  1K35 A;  3OST A;  4MRQ A;  2HZM A;  1V5S A;  2LAE A;  1KYF A;  1R4X A;  5IYB P;  4Q11 A;  4ROD B;  4QG5 A;  2H4L X;  3OC3 C;  1C9B B;  2JHJ A;  3OH6 A;  1YQM A;  1CDW A;  1N39 A;  1P5G X;  1QNB A;  3I0X A;  1MPG A;  1LXT A;  2JPI A;  2YH5 A;  1QN5 A;  1LWW A;  2NOZ A;  2NVM A;  3ASM A;  3UW2 A;  1KYD A;  3TE5 A;  2VJ0 A;  1QN9 A;  1HU0 A;  3D4V A;  2QRC A;  2OOX A;  2MZ8 A;  3OLP A;  1WJW A;  1VKL A;  2HZS A;  3CW7 A;  3I0W A;  1YQR A;  3F0Z A;  1N3C A;  1KO9 A;  3ENO C;  3ENC A;  3ULX A;  1NGM A;  4ROE B;  1VTO A;  4CFF A;  3OGD A;  1UT4 A;  2QRE A;  4WZS D;  2NOL A;  2F7L A;  3EIK A;  1TGH A;  4WXA A;  4WX8 A;  1VTL E;  3CVT A;  1YQL A;  1C4G A;  2V8Q A;  2DKD A;  2NLV A;  3IH7 A;  1YTB A;  2FGT A;  3N89 A;  5AN4 A;  2PWW A;  5EPC A;  3KRM A;  1PVS A;  4D7R A;  1KFI A;  3CWU A;  2DKC A;  2D0C A;  1PCM X;  2D0B A;  3RPJ A;  3PDK A;  1QN6 A;  1EBM A;  1T6A A;  1YQK A;  1QNC A;  2DKA A;  1M3Q A;  1LWV A;  4BJU A;  5HSH A;  5KL0 A;  2D0A A;  2Z8U A;  3VN5 A;  1UT7 A;  3C04 A;  2Y8Q A;  4B0A A;  4EAI A;  2XHI A;  4TPS A;  3F10 A;  2MJ7 A;  1JFI C;  5BMP A;  1K2Y X;  2Y8L A;  1KY6 A;  4IL8 A;  1QTP A;  1W80 A;  1M5Q 1;  1PCJ X;  4EAJ A;  4C7P A;  1LWY A;  2H5A X;  1J3M A;  4PY5 A;  3OH9 A;  1PCZ A;  2V92 A;  2OOY A;  1FN7 A;  2O3O A;  3BKQ X;  5JMV D;  1QN4 A;  4EJY A;  1VOK A;  4EAL A;  1QN3 A;  1VOL B;  1E42 A;  2QRD A;  3T4N A;  4EAG A;  5IYD P;  4EAK A;  1M3H A;  3CWT A;  4HJH A;  1KFQ A;  1EUV A;  1D3U A;  1YTF A;  2FKM X;  3DPT A;  1KY7 A;  1JDY A;  2IV8 A;  3SNS A;  1AIS A;  2NOH A;  2JHN A;  1QNA A;  2I5W A;  2JOI A;  1TBA B;  1WQA A;  1B9K A;  1NVP A;  2HKP A;  3HS8 A;  1UL7 A;  3H1Z A;  1QNE A;  1TBP A;  1NH2 A;  2NOF A;  4ROC B;  4I8O A;  3CWS A;  1MP9 A;  3EAY A;  2G30 A;  1QN8 A;  3OCI A;  3RSM A;  2QLV A;  2FUV A;  2HL8 A;  2ZFD B;  5BMN A;  2IV9 A;  1RM1 A;  1TUO A;  3CWA A;  1DIZ A;  2NOI A;  1KYU A;  3NA5 A;  3KTU A;  1XSZ A;  3OSE A;  2FKF A;  1PZD A;  3D7Q A;  3PMG A;  1N3A A;  2NOE A;  1P5D X;  2Z0F A;  3I3W A;  1QN7 A;  1QTS A;  2QR1 A;  1Q9U A;  4D7Q A;  2NWV A;  2EHB D;  3TDH A;  3CVS A;  1C47 A;  5F9C A;  4EJZ A; 
#chains in the Genus database with same CATH homology
 3DPU A;  3HS9 A;  3OSM A;  5IYC P;  2NOB A;  4DUL A;  3OST A;  2HZM A;  2LAE A;  1KYF A;  1R4X A;  5IYB P;  4Q11 A;  4ROD B;  3OC3 C;  1C9B B;  1YQM A;  1CDW A;  1N39 A;  1QNB A;  3I0X A;  1QN5 A;  2YH5 A;  1LWW A;  2NOZ A;  3ASM A;  1KYD A;  2VJ0 A;  1QN9 A;  1HU0 A;  2MZ8 A;  2HZS A;  3I0W A;  1YQR A;  3F0Z A;  1N3C A;  1KO9 A;  3ULX A;  1NGM A;  4ROE B;  1VTO A;  1UT4 A;  4WZS D;  2NOL A;  3EIK A;  1TGH A;  1VTL E;  1YQL A;  3IH7 A;  1YTB A;  2FGT A;  3N89 A;  5AN4 A;  3KRM A;  2D0C A;  2D0B A;  3RPJ A;  1EBM A;  1YQK A;  1QNC A;  1M3Q A;  1LWV A;  2D0A A;  2Z8U A;  3VN5 A;  1UT7 A;  2XHI A;  1QN6 A;  4B0A A;  4TPS A;  3F10 A;  2MJ7 A;  1JFI C;  1KY6 A;  1QTP A;  1W80 A;  1LWY A;  4PY5 A;  1PCZ A;  1FN7 A;  4EJY A;  2O3O A;  1QN4 A;  1VOK A;  1QN3 A;  1VOL B;  1E42 A;  5IYD P;  1M3H A;  1D3U A;  1YTF A;  3DPT A;  1KY7 A;  2IV8 A;  3SNS A;  1AIS A;  2NOH A;  1QNA A;  2I5W A;  2JOI A;  1TBA B;  1NVP A;  1B9K A;  3HS8 A;  3H1Z A;  1QNE A;  2NOF A;  1TBP A;  1NH2 A;  4ROC B;  4I8O A;  1MP9 A;  2G30 A;  1QN8 A;  3OCI A;  1RM1 A;  2IV9 A;  2NOI A;  1KYU A;  3KTU A;  1PZD A;  1N3A A;  2NOE A;  1QN7 A;  1QTS A;  4EJZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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