2LAEA

Nmr solution structure of the c-terminal domain of the e. coli lipoprotein bamc
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
118
structure length
118
Chain Sequence
DVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFSKPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Lipoprotein 34
publication title Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Membrane protein
total genus 27
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2011-03-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.170 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 2laeA00
3SNSA 2LAEA 2YH5A
chains in the Genus database with same CATH superfamily
5JMVD 1M5Q1 2V8QA 2DKAA 1V5SA 5KL0A 4WZSD 1E42A 4BJUA 1W80A 2Z8UA 5IYDP 3DPTA 3OCIA 1QTPA 1KYFA 2OOXA 3TE5A 2VJ0A 1QN4A 5BMPA 5EPCA 4RODB 2DKCA 1YQKA 1WQAA 1P5DX 2G30A 5IYCP 3T4NA 1KFIA 2Y8QA 2NOZA 1YTFA 1LWWA 2QRCA 1PVSA 2HL8A 3F0ZA 1YQRA 3F10A 1QNBA 1N39A 1K2YX 2JPIA 3CWSA 2OOYA 3VN5A 1VOKA 1MP9A 1P5GX 1VKLA 5JN5A 3OLPA 1YQMA 1QN6A 1QTSA 1LWVA 2YA3A 1B9KA 2H4LX 1TBAB 3OSTA 1CDWA 4D7QA 3HS8A 1D3UA 2MJ7A 3ENCA 3D4VA 2HL9A 2H5AX 3I3WA 3PMGA 1R4XA 3HS9A 5BMNA 2FGTA 1HU0A 1KYUA 4EJZA 3RSMA 4DULA 1QN5A 2QRDA 3EAYA 3UW2A 4CFFA 1KYDA 2F7LA 4EJYA 2FKMX 1JFIC 1QN7A 5F9CA 2O3OA 2QR1A 4WX8A 1WJWA 1TGHA 1TBPA 3EIKA 4EAIA 1PCJX 4B0AA 2IV9A 2MZ8A 4HJHA 3OGDA 3CVTA 2D0BA 2V92A 3ASMA 4Q11A 1PCZA 3I0WA 1KY6A 2LAEA 4D7RA 1QN8A 2HZMA 3C04A 1DIZA 1PZDA 3OH6A 2NOBA 1M3HA 1QNAA 4EAJA 1NH2A 2HZSA 3H1ZA 1XSZA 3KRMA 2NOIA 1K35A 2FKFA 4EAKA 1YTBA 3OSEA 4MRQA 2Z0FA 2DKDA 3BKQX 3D7QA 2XHIA 1N3AA 1VOLB 3CW7A 4C7PA 1N3CA 4EALA 1TUOA 5AN4A 3CVSA 4QG5A 2R5XA 2NOEA 2Y8LA 3OC3C 2D0CA 1KO9A 1C47A 2NOFA 4TPSA 2HKPA 2QLVA 1AISA 1UT4A 2NOHA 4WXAA 2EHBD 1QN9A 2ZFDB 1PCMX 1Q9UA 3SNSA 4ROCB 1M3QA 2QREA 2FUVA 1EUVA 2JOIA 3CWUA 3ULXA 3KTUA 3ENOC 1LXTA 2JHJA 3DPUA 3NA5A 1UT7A 2PWWA 2V9JA 1C9BB 2NOLA 1YQLA 4EAGA 1LWYA 5IYBP 1VTOA 1VTLE 1NGMA 4PY5A 3RPJA 2IV8A 4I8OA 2I5WA 4IL8A 1NVPA 2D0AA 3N89A 1KFQA 5HSHA 1QNCA 3CWAA 4ROEB 2JHNA 1QNEA 1JDYA 3IH7A 3CWTA 3OSMA 1KY7A 3OH9A 1C4GA 1T6AA 1J3MA 2NLVA 1EBMA 1UL7A 1FN7A 3I0XA 1MPGA 2NVMA 1RM1A 3PDKA 2YH5A 3TDHA 2NWVA 1QN3A
chains in the Genus database with same CATH topology
4WZSD 1E42A 1W80A 2Z8UA 5IYDP 3DPTA 3OCIA 1QTPA 1KYFA 2VJ0A 1QN4A 4RODB 1YQKA 2G30A 5IYCP 2NOZA 1YTFA 1LWWA 3F0ZA 1YQRA 3F10A 1QNBA 1N39A 3VN5A 1VOKA 1MP9A 1YQMA 1QN6A 1QTSA 1LWVA 1B9KA 1TBAB 3OSTA 1CDWA 3HS8A 1D3UA 2MJ7A 1R4XA 3HS9A 2FGTA 1HU0A 1KYUA 4EJZA 4DULA 1QN5A 1KYDA 4EJYA 1JFIC 1QN7A 2O3OA 1TGHA 1TBPA 3EIKA 4B0AA 2IV9A 2MZ8A 2D0BA 3ASMA 4Q11A 1PCZA 3I0WA 1KY6A 2LAEA 1QN8A 2HZMA 1PZDA 1M3HA 1QNAA 1NH2A 2HZSA 3H1ZA 3KRMA 2NOIA 1YTBA 1N3AA 1VOLB 2XHIA 1N3CA 5AN4A 2NOEA 3OC3C 2D0CA 1KO9A 2NOFA 4TPSA 1AISA 1UT4A 2NOHA 1QN9A 1M3QA 3SNSA 4ROCB 2JOIA 2NOBA 3ULXA 3KTUA 3DPUA 1C9BB 2NOLA 1UT7A 1YQLA 1LWYA 1VTOA 1VTLE 5IYBP 1NGMA 4PY5A 3RPJA 2IV8A 4I8OA 2I5WA 1NVPA 2D0AA 3N89A 1QNCA 4ROEB 1QNEA 3IH7A 3OSMA 1KY7A 1EBMA 1FN7A 3I0XA 1RM1A 2YH5A 1QN3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SNS A;  2LAE A;  2YH5 A; 
#chains in the Genus database with same CATH topology
 5JMV D;  1M5Q 1;  2V8Q A;  2DKA A;  1V5S A;  5KL0 A;  4WZS D;  1E42 A;  4BJU A;  1W80 A;  2Z8U A;  5IYD P;  3DPT A;  3OCI A;  1QTP A;  1KYF A;  2OOX A;  3TE5 A;  2VJ0 A;  1QN4 A;  5BMP A;  5EPC A;  4ROD B;  2DKC A;  1YQK A;  1WQA A;  1P5D X;  2G30 A;  5IYC P;  3T4N A;  1KFI A;  2Y8Q A;  2NOZ A;  1YTF A;  1LWW A;  2QRC A;  1PVS A;  2HL8 A;  3F0Z A;  1YQR A;  3F10 A;  1QNB A;  1N39 A;  1K2Y X;  2JPI A;  3CWS A;  2OOY A;  3VN5 A;  1VOK A;  1MP9 A;  1P5G X;  1VKL A;  5JN5 A;  3OLP A;  1YQM A;  1QN6 A;  1QTS A;  1LWV A;  2YA3 A;  1B9K A;  2H4L X;  1TBA B;  3OST A;  1CDW A;  4D7Q A;  3HS8 A;  1D3U A;  2MJ7 A;  3ENC A;  3D4V A;  2HL9 A;  2H5A X;  3I3W A;  3PMG A;  1R4X A;  3HS9 A;  5BMN A;  2FGT A;  1HU0 A;  1KYU A;  4EJZ A;  3RSM A;  4DUL A;  1QN5 A;  2QRD A;  3EAY A;  3UW2 A;  4CFF A;  1KYD A;  2F7L A;  4EJY A;  2FKM X;  1JFI C;  1QN7 A;  5F9C A;  2O3O A;  2QR1 A;  4WX8 A;  1WJW A;  1TGH A;  1TBP A;  3EIK A;  4EAI A;  1PCJ X;  4B0A A;  2IV9 A;  2MZ8 A;  4HJH A;  3OGD A;  3CVT A;  2D0B A;  2V92 A;  3ASM A;  4Q11 A;  1PCZ A;  3I0W A;  1KY6 A;  2LAE A;  4D7R A;  1QN8 A;  2HZM A;  3C04 A;  1DIZ A;  1PZD A;  3OH6 A;  2NOB A;  1M3H A;  1QNA A;  4EAJ A;  1NH2 A;  2HZS A;  3H1Z A;  1XSZ A;  3KRM A;  2NOI A;  1K35 A;  2FKF A;  4EAK A;  1YTB A;  3OSE A;  4MRQ A;  2Z0F A;  2DKD A;  3BKQ X;  3D7Q A;  2XHI A;  1N3A A;  1VOL B;  3CW7 A;  4C7P A;  1N3C A;  4EAL A;  1TUO A;  5AN4 A;  3CVS A;  4QG5 A;  2R5X A;  2NOE A;  2Y8L A;  3OC3 C;  2D0C A;  1KO9 A;  1C47 A;  2NOF A;  4TPS A;  2HKP A;  2QLV A;  1AIS A;  1UT4 A;  2NOH A;  4WXA A;  2EHB D;  1QN9 A;  2ZFD B;  1PCM X;  1Q9U A;  3SNS A;  4ROC B;  1M3Q A;  2QRE A;  2FUV A;  1EUV A;  2JOI A;  3CWU A;  3ULX A;  3KTU A;  3ENO C;  1LXT A;  2JHJ A;  3DPU A;  3NA5 A;  1UT7 A;  2PWW A;  2V9J A;  1C9B B;  2NOL A;  1YQL A;  4EAG A;  1LWY A;  5IYB P;  1VTO A;  1VTL E;  1NGM A;  4PY5 A;  3RPJ A;  2IV8 A;  4I8O A;  2I5W A;  4IL8 A;  1NVP A;  2D0A A;  3N89 A;  1KFQ A;  5HSH A;  1QNC A;  3CWA A;  4ROE B;  2JHN A;  1QNE A;  1JDY A;  3IH7 A;  3CWT A;  3OSM A;  1KY7 A;  3OH9 A;  1C4G A;  1T6A A;  1J3M A;  2NLV A;  1EBM A;  1UL7 A;  1FN7 A;  3I0X A;  1MPG A;  2NVM A;  1RM1 A;  3PDK A;  2YH5 A;  3TDH A;  2NWV A;  1QN3 A; 
#chains in the Genus database with same CATH homology
 4WZS D;  1E42 A;  1W80 A;  2Z8U A;  5IYD P;  3DPT A;  3OCI A;  1QTP A;  1KYF A;  2VJ0 A;  1QN4 A;  4ROD B;  1YQK A;  2G30 A;  5IYC P;  2NOZ A;  1YTF A;  1LWW A;  3F0Z A;  1YQR A;  3F10 A;  1QNB A;  1N39 A;  3VN5 A;  1VOK A;  1MP9 A;  1YQM A;  1QN6 A;  1QTS A;  1LWV A;  1B9K A;  1TBA B;  3OST A;  1CDW A;  3HS8 A;  1D3U A;  2MJ7 A;  1R4X A;  3HS9 A;  2FGT A;  1HU0 A;  1KYU A;  4EJZ A;  4DUL A;  1QN5 A;  1KYD A;  4EJY A;  1JFI C;  1QN7 A;  2O3O A;  1TGH A;  1TBP A;  3EIK A;  4B0A A;  2IV9 A;  2MZ8 A;  2D0B A;  3ASM A;  4Q11 A;  1PCZ A;  3I0W A;  1KY6 A;  2LAE A;  1QN8 A;  2HZM A;  1PZD A;  1M3H A;  1QNA A;  1NH2 A;  2HZS A;  3H1Z A;  3KRM A;  2NOI A;  1YTB A;  1N3A A;  1VOL B;  2XHI A;  1N3C A;  5AN4 A;  2NOE A;  3OC3 C;  2D0C A;  1KO9 A;  2NOF A;  4TPS A;  1AIS A;  1UT4 A;  2NOH A;  1QN9 A;  1M3Q A;  3SNS A;  4ROC B;  2JOI A;  2NOB A;  3ULX A;  3KTU A;  3DPU A;  1C9B B;  2NOL A;  1UT7 A;  1YQL A;  1LWY A;  1VTO A;  1VTL E;  5IYB P;  1NGM A;  4PY5 A;  3RPJ A;  2IV8 A;  4I8O A;  2I5W A;  1NVP A;  2D0A A;  3N89 A;  1QNC A;  4ROE B;  1QNE A;  3IH7 A;  3OSM A;  1KY7 A;  1EBM A;  1FN7 A;  3I0X A;  1RM1 A;  2YH5 A;  1QN3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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