3T4NA

Structure of the regulatory fragment of saccharomyces cerevisiae ampk in complex with adp
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
166
structure length
139
Chain Sequence
STVSILPTSLPQIHRANMLAQGSPAASKISPLVTKKSKTRWHFGIRSRSYPLDVMGEIYIALKNLGAEWAKPSEEDLWTIKLRWKYIPDLMKMVIQLFQIETNNYLVDFKFDGWESSTFSAYPFLHLTTKLIMELAVNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title ADP Regulates SNF1, the Saccharomyces cerevisiae Homolog of AMP-Activated Protein Kinase.
pubmed doi rcsb
molecule tags Protein binding
source organism Saccharomyces cerevisiae
molecule keywords Carbon catabolite-derepressing protein kinase
total genus 29
structure length 139
sequence length 166
ec nomenclature ec 2.7.11.1: Non-specific serine/threonine protein kinase.
pdb deposition date 2011-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16579 AdenylateSensor Adenylate sensor of SNF1-like protein kinase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.80 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Kinase associated domain 1, KA1 3t4nA01
3TDHA 3OSEA 2OOYA 2EHBD 2QRDA 2Y8LA 4EAJA 2V8QA 1V5SA 2V9JA 3T4NA 4EALA 1UL7A 4EAGA 2QREA 2YA3A 2QRCA 2QR1A 2ZFDB 4EAIA 2Y8QA 4EAKA 3TE5A 4CFFA 2V92A 2QLVA 2OOXA
chains in the Genus database with same CATH superfamily
1N3AA 3F10A 5AN4A 2D0BA 2I5WA 2FGTA 3IH7A 2LAEA 1QTPA 2H5AX 2V8QA 1KFQA 1TUOA 2NLVA 1D3UA 1YQLA 5HSHA 1KY7A 3DPTA 3PDKA 1N39A 1QN8A 3CVSA 4HJHA 5BMPA 3RSMA 2ZFDB 2JPIA 3H1ZA 3TE5A 4D7QA 3SNSA 2D0CA 1QNBA 1QN5A 1EUVA 2H4LX 1QTSA 4C7PA 4ROEB 1VOLB 1WQAA 3ENOC 2HKPA 4B0AA 2MJ7A 1KYFA 3EIKA 3OGDA 1K35A 2HL8A 1LXTA 2YH5A 4I8OA 3CWUA 4QG5A 1M3QA 2NOZA 3DPUA 3KTUA 3CWAA 4RODB 2VJ0A 2EHBD 2QRDA 3CWTA 1QN6A 2D0AA 3F0ZA 5EPCA 1B9KA 2IV9A 2NOBA 5JMVD 3ULXA 1HU0A 1K2YX 2NWVA 5F9CA 1J3MA 1MP9A 1R4XA 4EAGA 1N3CA 3BKQX 2Z8UA 2DKCA 2MZ8A 2HZMA 4EJZA 1LWYA 2QRCA 4ROCB 2R5XA 1YQMA 1Q9UA 2HZSA 3OC3C 1E42A 1EBMA 2DKAA 1PCZA 3VN5A 1T6AA 1PZDA 1NVPA 2QLVA 3OSMA 1QN3A 2OOXA 1PVSA 1TBAB 1UT7A 2Z0FA 1QN4A 1C4GA 3UW2A 1C47A 2O3OA 2FKMX 3OCIA 2FKFA 1M3HA 3I3WA 2DKDA 4DULA 2F7LA 3OH6A 1KYDA 1NH2A 3ENCA 1QN9A 4MRQA 4EAJA 1VTLE 5IYBP 1YQKA 1UT4A 1V5SA 1TGHA 2NOLA 2V9JA 1VKLA 3T4NA 5IYDP 1QNCA 2FUVA 1KFIA 1UL7A 2NVMA 4EALA 1CDWA 1LWVA 1FN7A 2QREA 3PMGA 1RM1A 1YTFA 3I0XA 1KY6A 3D4VA 1VTOA 5BMNA 1KO9A 3KRMA 4EAIA 2Y8QA 4EAKA 1WJWA 2IV8A 1JFIC 1JDYA 3I0WA 3ASMA 1VOKA 5KL0A 2HL9A 3D7QA 2JOIA 2G30A 3OLPA 4WXAA 1XSZA 2PWWA 4EJYA 5IYCP 1QN7A 3TDHA 1P5DX 2JHNA 1PCMX 1MPGA 3OSEA 2OOYA 5JN5A 1NGMA 2NOEA 2NOIA 3HS9A 2JHJA 4Q11A 2Y8LA 1C9BB 3N89A 2XHIA 3CW7A 1P5GX 1TBPA 3CWSA 1W80A 2NOHA 3EAYA 3NA5A 3RPJA 4PY5A 3CVTA 3OSTA 2YA3A 4D7RA 2QR1A 4IL8A 4WZSD 3OH9A 1AISA 1YQRA 1PCJX 4TPSA 1DIZA 1QNAA 4BJUA 1QNEA 1KYUA 2NOFA 1LWWA 1YTBA 4CFFA 3C04A 2V92A 4WX8A 3HS8A 1M5Q1
chains in the Genus database with same CATH topology
3TDHA 3OSEA 2OOYA 2EHBD 2QRDA 2Y8LA 4EAJA 2V8QA 1V5SA 2V9JA 3T4NA 4EALA 1UL7A 4EAGA 2QREA 2YA3A 2QRCA 2QR1A 2ZFDB 4EAIA 2Y8QA 4EAKA 3TE5A 4CFFA 2V92A 2QLVA 2OOXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TDH A;  3OSE A;  2OOY A;  2EHB D;  2QRD A;  2Y8L A;  4EAJ A;  2V8Q A;  1V5S A;  2V9J A;  3T4N A;  4EAL A;  1UL7 A;  4EAG A;  2QRE A;  2YA3 A;  2QRC A;  2QR1 A;  2ZFD B;  4EAI A;  2Y8Q A;  4EAK A;  3TE5 A;  4CFF A;  2V92 A;  2QLV A;  2OOX A; 
#chains in the Genus database with same CATH topology
 1N3A A;  3F10 A;  5AN4 A;  2D0B A;  2I5W A;  2FGT A;  3IH7 A;  2LAE A;  1QTP A;  2H5A X;  2V8Q A;  1KFQ A;  1TUO A;  2NLV A;  1D3U A;  1YQL A;  5HSH A;  1KY7 A;  3DPT A;  3PDK A;  1N39 A;  1QN8 A;  3CVS A;  4HJH A;  5BMP A;  3RSM A;  2ZFD B;  2JPI A;  3H1Z A;  3TE5 A;  4D7Q A;  3SNS A;  2D0C A;  1QNB A;  1QN5 A;  1EUV A;  2H4L X;  1QTS A;  4C7P A;  4ROE B;  1VOL B;  1WQA A;  3ENO C;  2HKP A;  4B0A A;  2MJ7 A;  1KYF A;  3EIK A;  3OGD A;  1K35 A;  2HL8 A;  1LXT A;  2YH5 A;  4I8O A;  3CWU A;  4QG5 A;  1M3Q A;  2NOZ A;  3DPU A;  3KTU A;  3CWA A;  4ROD B;  2VJ0 A;  2EHB D;  2QRD A;  3CWT A;  1QN6 A;  2D0A A;  3F0Z A;  5EPC A;  1B9K A;  2IV9 A;  2NOB A;  5JMV D;  3ULX A;  1HU0 A;  1K2Y X;  2NWV A;  5F9C A;  1J3M A;  1MP9 A;  1R4X A;  4EAG A;  1N3C A;  3BKQ X;  2Z8U A;  2DKC A;  2MZ8 A;  2HZM A;  4EJZ A;  1LWY A;  2QRC A;  4ROC B;  2R5X A;  1YQM A;  1Q9U A;  2HZS A;  3OC3 C;  1E42 A;  1EBM A;  2DKA A;  1PCZ A;  3VN5 A;  1T6A A;  1PZD A;  1NVP A;  2QLV A;  3OSM A;  1QN3 A;  2OOX A;  1PVS A;  1TBA B;  1UT7 A;  2Z0F A;  1QN4 A;  1C4G A;  3UW2 A;  1C47 A;  2O3O A;  2FKM X;  3OCI A;  2FKF A;  1M3H A;  3I3W A;  2DKD A;  4DUL A;  2F7L A;  3OH6 A;  1KYD A;  1NH2 A;  3ENC A;  1QN9 A;  4MRQ A;  4EAJ A;  1VTL E;  5IYB P;  1YQK A;  1UT4 A;  1V5S A;  1TGH A;  2NOL A;  2V9J A;  1VKL A;  3T4N A;  5IYD P;  1QNC A;  2FUV A;  1KFI A;  1UL7 A;  2NVM A;  4EAL A;  1CDW A;  1LWV A;  1FN7 A;  2QRE A;  3PMG A;  1RM1 A;  1YTF A;  3I0X A;  1KY6 A;  3D4V A;  1VTO A;  5BMN A;  1KO9 A;  3KRM A;  4EAI A;  2Y8Q A;  4EAK A;  1WJW A;  2IV8 A;  1JFI C;  1JDY A;  3I0W A;  3ASM A;  1VOK A;  5KL0 A;  2HL9 A;  3D7Q A;  2JOI A;  2G30 A;  3OLP A;  4WXA A;  1XSZ A;  2PWW A;  4EJY A;  5IYC P;  1QN7 A;  3TDH A;  1P5D X;  2JHN A;  1PCM X;  1MPG A;  3OSE A;  2OOY A;  5JN5 A;  1NGM A;  2NOE A;  2NOI A;  3HS9 A;  2JHJ A;  4Q11 A;  2Y8L A;  1C9B B;  3N89 A;  2XHI A;  3CW7 A;  1P5G X;  1TBP A;  3CWS A;  1W80 A;  2NOH A;  3EAY A;  3NA5 A;  3RPJ A;  4PY5 A;  3CVT A;  3OST A;  2YA3 A;  4D7R A;  2QR1 A;  4IL8 A;  4WZS D;  3OH9 A;  1AIS A;  1YQR A;  1PCJ X;  4TPS A;  1DIZ A;  1QNA A;  4BJU A;  1QNE A;  1KYU A;  2NOF A;  1LWW A;  1YTB A;  4CFF A;  3C04 A;  2V92 A;  4WX8 A;  3HS8 A;  1M5Q 1; 
#chains in the Genus database with same CATH homology
 3TDH A;  3OSE A;  2OOY A;  2EHB D;  2QRD A;  2Y8L A;  4EAJ A;  2V8Q A;  1V5S A;  2V9J A;  3T4N A;  4EAL A;  1UL7 A;  4EAG A;  2QRE A;  2YA3 A;  2QRC A;  2QR1 A;  2ZFD B;  4EAI A;  2Y8Q A;  4EAK A;  3TE5 A;  4CFF A;  2V92 A;  2QLV A;  2OOX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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