1J3MA

Crystal structure of the conserved hypothetical protein tt1751 from thermus thermophilus hb8
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
127
structure length
127
Chain Sequence
GMRKTLKATLAEARAQVEAALKEEGFGILTEIDVAATLKAKLGLEKPPYLILGACNPNLAARALEALPEIGLLLPCNVVLREAEEGVEVLIQDPKEMFRVLPEATQRALAPVAEEARTRLSRALSRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords the conserved hypothetical protein TT1751
publication title Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Structural genomics, unknown function
total genus 42
structure length 127
sequence length 127
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03625 DUF302 Domain of unknown function DUF302
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.70 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TT1751-like domain 1j3mA00
1Q9UA 1J3MA
chains in the Genus database with same CATH superfamily
1EUVA 3EIKA 2V8QA 3CW7A 1TBPA 2OOYA 2NOIA 1C9BB 3NA5A 1UL7A 1QN7A 1MP9A 4B0AA 1CDWA 4MRQA 1KY7A 1QTPA 2JHJA 2QR1A 1D3UA 3OGDA 1M3QA 3HS9A 1YQLA 2QRDA 2HZMA 1KYUA 3RPJA 2JOIA 1KYFA 5JMVD 1Q9UA 1N3CA 3PMGA 4CFFA 5JN5A 3I0XA 1YQRA 3OSTA 5HSHA 2PWWA 2NOLA 3N89A 2H5AX 4IL8A 1V5SA 2YA3A 3EAYA 1UT7A 2NOBA 2NOEA 3PDKA 2V92A 5BMNA 4QG5A 3C04A 3OCIA 1YQKA 4D7QA 1N3AA 1PZDA 2ZFDB 4HJHA 3IH7A 4WZSD 1HU0A 5KL0A 1WQAA 2HZSA 2OOXA 1NVPA 2XHIA 2NWVA 1DIZA 2Z0FA 3CWTA 2MJ7A 3CWSA 1VOKA 2IV9A 1NGMA 1NH2A 3OSMA 2DKAA 1P5GX 1M5Q1 5IYBP 5F9CA 2QLVA 4ROCB 1K35A 2D0AA 2O3OA 1M3HA 1LWYA 1YQMA 3OLPA 4RODB 3RSMA 1PVSA 2Y8LA 1R4XA 1LWWA 3D7QA 3ENCA 2NLVA 4EAGA 2G30A 2FKMX 4EAIA 1QN4A 3OH6A 2I5WA 1QTSA 3DPTA 2DKDA 4C7PA 1QN5A 3OSEA 1VTLE 2FGTA 1QNEA 1RM1A 2NVMA 3CWAA 2NOZA 4EJZA 3SNSA 5AN4A 1E42A 3OC3C 2EHBD 1YTFA 4EAJA 1QN8A 3DPUA 4ROEB 1T6AA 4EAKA 1QN3A 4WXAA 4TPSA 3TE5A 2FKFA 1TBAB 1LWVA 3HS8A 3F10A 1W80A 2LAEA 2R5XA 1EBMA 3OH9A 1QN9A 2HL8A 1KFIA 4PY5A 3CWUA 1YTBA 2VJ0A 2Y8QA 1WJWA 2D0BA 1PCJX 4BJUA 1AISA 4DULA 3KRMA 2NOFA 3BKQX 3I3WA 2MZ8A 3I0WA 1KYDA 2YH5A 3CVSA 3VN5A 3CVTA 1K2YX 3ASMA 2JPIA 3UW2A 1VOLB 1LXTA 2IV8A 3T4NA 2HKPA 2H4LX 4Q11A 4WX8A 1MPGA 2FUVA 4D7RA 4EJYA 4I8OA 1KO9A 1KFQA 2NOHA 1JDYA 1TGHA 4EALA 1VKLA 3H1ZA 1VTOA 5BMPA 1UT4A 1QNAA 1B9KA 2JHNA 1QNCA 1JFIC 5IYCP 1XSZA 3F0ZA 1N39A 1KY6A 3ENOC 3TDHA 1PCZA 2F7LA 3D4VA 1PCMX 1C4GA 1P5DX 1J3MA 5EPCA 3KTUA 2D0CA 1QNBA 1FN7A 2Z8UA 2QRCA 2HL9A 5IYDP 1TUOA 3ULXA 1C47A 2QREA 2DKCA 2V9JA 1QN6A
chains in the Genus database with same CATH topology
1Q9UA 1J3MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q9U A;  1J3M A; 
#chains in the Genus database with same CATH topology
 1EUV A;  3EIK A;  2V8Q A;  3CW7 A;  1TBP A;  2OOY A;  2NOI A;  1C9B B;  3NA5 A;  1UL7 A;  1QN7 A;  1MP9 A;  4B0A A;  1CDW A;  4MRQ A;  1KY7 A;  1QTP A;  2JHJ A;  2QR1 A;  1D3U A;  3OGD A;  1M3Q A;  3HS9 A;  1YQL A;  2QRD A;  2HZM A;  1KYU A;  3RPJ A;  2JOI A;  1KYF A;  5JMV D;  1Q9U A;  1N3C A;  3PMG A;  4CFF A;  5JN5 A;  3I0X A;  1YQR A;  3OST A;  5HSH A;  2PWW A;  2NOL A;  3N89 A;  2H5A X;  4IL8 A;  1V5S A;  2YA3 A;  3EAY A;  1UT7 A;  2NOB A;  2NOE A;  3PDK A;  2V92 A;  5BMN A;  4QG5 A;  3C04 A;  3OCI A;  1YQK A;  4D7Q A;  1N3A A;  1PZD A;  2ZFD B;  4HJH A;  3IH7 A;  4WZS D;  1HU0 A;  5KL0 A;  1WQA A;  2HZS A;  2OOX A;  1NVP A;  2XHI A;  2NWV A;  1DIZ A;  2Z0F A;  3CWT A;  2MJ7 A;  3CWS A;  1VOK A;  2IV9 A;  1NGM A;  1NH2 A;  3OSM A;  2DKA A;  1P5G X;  1M5Q 1;  5IYB P;  5F9C A;  2QLV A;  4ROC B;  1K35 A;  2D0A A;  2O3O A;  1M3H A;  1LWY A;  1YQM A;  3OLP A;  4ROD B;  3RSM A;  1PVS A;  2Y8L A;  1R4X A;  1LWW A;  3D7Q A;  3ENC A;  2NLV A;  4EAG A;  2G30 A;  2FKM X;  4EAI A;  1QN4 A;  3OH6 A;  2I5W A;  1QTS A;  3DPT A;  2DKD A;  4C7P A;  1QN5 A;  3OSE A;  1VTL E;  2FGT A;  1QNE A;  1RM1 A;  2NVM A;  3CWA A;  2NOZ A;  4EJZ A;  3SNS A;  5AN4 A;  1E42 A;  3OC3 C;  2EHB D;  1YTF A;  4EAJ A;  1QN8 A;  3DPU A;  4ROE B;  1T6A A;  4EAK A;  1QN3 A;  4WXA A;  4TPS A;  3TE5 A;  2FKF A;  1TBA B;  1LWV A;  3HS8 A;  3F10 A;  1W80 A;  2LAE A;  2R5X A;  1EBM A;  3OH9 A;  1QN9 A;  2HL8 A;  1KFI A;  4PY5 A;  3CWU A;  1YTB A;  2VJ0 A;  2Y8Q A;  1WJW A;  2D0B A;  1PCJ X;  4BJU A;  1AIS A;  4DUL A;  3KRM A;  2NOF A;  3BKQ X;  3I3W A;  2MZ8 A;  3I0W A;  1KYD A;  2YH5 A;  3CVS A;  3VN5 A;  3CVT A;  1K2Y X;  3ASM A;  2JPI A;  3UW2 A;  1VOL B;  1LXT A;  2IV8 A;  3T4N A;  2HKP A;  2H4L X;  4Q11 A;  4WX8 A;  1MPG A;  2FUV A;  4D7R A;  4EJY A;  4I8O A;  1KO9 A;  1KFQ A;  2NOH A;  1JDY A;  1TGH A;  4EAL A;  1VKL A;  3H1Z A;  1VTO A;  5BMP A;  1UT4 A;  1QNA A;  1B9K A;  2JHN A;  1QNC A;  1JFI C;  5IYC P;  1XSZ A;  3F0Z A;  1N39 A;  1KY6 A;  3ENO C;  3TDH A;  1PCZ A;  2F7L A;  3D4V A;  1PCM X;  1C4G A;  1P5D X;  1J3M A;  5EPC A;  3KTU A;  2D0C A;  1QNB A;  1FN7 A;  2Z8U A;  2QRC A;  2HL9 A;  5IYD P;  1TUO A;  3ULX A;  1C47 A;  2QRE A;  2DKC A;  2V9J A;  1QN6 A; 
#chains in the Genus database with same CATH homology
 1Q9U A;  1J3M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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