1J3MA

Crystal structure of the conserved hypothetical protein tt1751 from thermus thermophilus hb8
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
127
structure length
127
Chain Sequence
GMRKTLKATLAEARAQVEAALKEEGFGILTEIDVAATLKAKLGLEKPPYLILGACNPNLAARALEALPEIGLLLPCNVVLREAEEGVEVLIQDPKEMFRVLPEATQRALAPVAEEARTRLSRALSRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Thermus thermophilus
publication title Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8
pubmed doi rcsb
molecule keywords the conserved hypothetical protein TT1751
total genus 42
structure length 127
sequence length 127
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-02-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03625 DUF302 Domain of unknown function DUF302
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.70 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TT1751-like domain 1j3mA00
1J3MA 1Q9UA
chains in the Genus database with same CATH superfamily
1LWYA 2QLVA 2NOEA 1YTFA 2NOIA 3ULXA 4I8OA 1Q9UA 1QNCA 3CWSA 1UT7A 1QTPA 4CFFA 2F7LA 4WXAA 1EBMA 1KO9A 2DKCA 3PMGA 4HJHA 1LWVA 1W80A 1WQAA 3RPJA 1LXTA 1YQRA 2QREA 3SNSA 2JOIA 4D7RA 2DKDA 2QRDA 2R5XA 3OGDA 1EUVA 1FN7A 1C47A 2V8QA 1KYFA 2JPIA 5BMNA 4EAIA 3I0XA 1YTBA 4WZSD 4B0AA 3PDKA 1VTLE 2NOBA 1CDWA 5IYDP 2XHIA 5IYBP 5IYCP 2FKFA 3CW7A 2PWWA 3I0WA 4ROEB 1D3UA 3CWTA 3OCIA 4BJUA 4ROCB 4EAKA 4TPSA 3CWAA 1E42A 1XSZA 3EIKA 5JMVD 2FUVA 2HL9A 1VKLA 1NGMA 3OSEA 1C9BB 1QN4A 3HS9A 1PCZA 3F10A 3KRMA 2NOHA 3D7QA 2JHJA 3EAYA 2YH5A 5AN4A 1R4XA 1QN5A 4QG5A 4EALA 1PZDA 1KYDA 3ASMA 2H5AX 1UL7A 3IH7A 3DPUA 2ZFDB 1QNBA 3OSTA 4MRQA 3CWUA 4C7PA 4Q11A 2G30A 1NH2A 1WJWA 4RODB 2H4LX 1N39A 2DKAA 1VOKA 4D7QA 2IV8A 2IV9A 1YQMA 1QN8A 2Z8UA 2HZSA 1J3MA 2Y8LA 3ENOC 1YQLA 1KY7A 1QNAA 2NOFA 1KFQA 5HSHA 3T4NA 2MJ7A 2VJ0A 3BKQX 2HKPA 2QRCA 3TE5A 1K35A 1KFIA 3F0ZA 4IL8A 1C4GA 1M3HA 1PCJX 3OH9A 2EHBD 1PCMX 4EAJA 1JFIC 3CVSA 3TDHA 2D0AA 2Z0FA 2NLVA 3H1ZA 3RSMA 3N89A 2YA3A 1KYUA 2V92A 2MZ8A 1NVPA 1TBPA 1LWWA 3CVTA 1QN9A 3OC3C 1N3AA 1VOLB 3OH6A 4EJYA 1MP9A 3UW2A 3D4VA 3HS8A 5EPCA 1TUOA 5F9CA 2NOLA 2FGTA 4WX8A 4EAGA 2OOXA 3I3WA 1KY6A 1VTOA 2V9JA 1UT4A 1TGHA 2O3OA 4DULA 3DPTA 2QR1A 1B9KA 1JDYA 5JN5A 2D0BA 3KTUA 1M3QA 3C04A 3OSMA 1P5DX 2OOYA 1MPGA 1M5Q1 1TBAB 2LAEA 2NWVA 3NA5A 4EJZA 2HL8A 2HZMA 1HU0A 2JHNA 2NVMA 5BMPA 2Y8QA 1RM1A 1QN7A 3VN5A 1V5SA 1P5GX 1DIZA 2I5WA 4PY5A 2NOZA 1AISA 1QN6A 5KL0A 1N3CA 1QNEA 2FKMX 3ENCA 1QTSA 1K2YX 3OLPA 1QN3A 2D0CA 1T6AA 1PVSA 1YQKA
chains in the Genus database with same CATH topology
1J3MA 1Q9UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J3M A;  1Q9U A; 
#chains in the Genus database with same CATH topology
 1LWY A;  2QLV A;  2NOE A;  1YTF A;  2NOI A;  3ULX A;  4I8O A;  1Q9U A;  1QNC A;  3CWS A;  1UT7 A;  1QTP A;  4CFF A;  2F7L A;  4WXA A;  1EBM A;  1KO9 A;  2DKC A;  3PMG A;  4HJH A;  1LWV A;  1W80 A;  1WQA A;  3RPJ A;  1LXT A;  1YQR A;  2QRE A;  3SNS A;  2JOI A;  4D7R A;  2DKD A;  2QRD A;  2R5X A;  3OGD A;  1EUV A;  1FN7 A;  1C47 A;  2V8Q A;  1KYF A;  2JPI A;  5BMN A;  4EAI A;  3I0X A;  1YTB A;  4WZS D;  4B0A A;  3PDK A;  1VTL E;  2NOB A;  1CDW A;  5IYD P;  2XHI A;  5IYB P;  5IYC P;  2FKF A;  3CW7 A;  2PWW A;  3I0W A;  4ROE B;  1D3U A;  3CWT A;  3OCI A;  4BJU A;  4ROC B;  4EAK A;  4TPS A;  3CWA A;  1E42 A;  1XSZ A;  3EIK A;  5JMV D;  2FUV A;  2HL9 A;  1VKL A;  1NGM A;  3OSE A;  1C9B B;  1QN4 A;  3HS9 A;  1PCZ A;  3F10 A;  3KRM A;  2NOH A;  3D7Q A;  2JHJ A;  3EAY A;  2YH5 A;  5AN4 A;  1R4X A;  1QN5 A;  4QG5 A;  4EAL A;  1PZD A;  1KYD A;  3ASM A;  2H5A X;  1UL7 A;  3IH7 A;  3DPU A;  2ZFD B;  1QNB A;  3OST A;  4MRQ A;  3CWU A;  4C7P A;  4Q11 A;  2G30 A;  1NH2 A;  1WJW A;  4ROD B;  2H4L X;  1N39 A;  2DKA A;  1VOK A;  4D7Q A;  2IV8 A;  2IV9 A;  1YQM A;  1QN8 A;  2Z8U A;  2HZS A;  1J3M A;  2Y8L A;  3ENO C;  1YQL A;  1KY7 A;  1QNA A;  2NOF A;  1KFQ A;  5HSH A;  3T4N A;  2MJ7 A;  2VJ0 A;  3BKQ X;  2HKP A;  2QRC A;  3TE5 A;  1K35 A;  1KFI A;  3F0Z A;  4IL8 A;  1C4G A;  1M3H A;  1PCJ X;  3OH9 A;  2EHB D;  1PCM X;  4EAJ A;  1JFI C;  3CVS A;  3TDH A;  2D0A A;  2Z0F A;  2NLV A;  3H1Z A;  3RSM A;  3N89 A;  2YA3 A;  1KYU A;  2V92 A;  2MZ8 A;  1NVP A;  1TBP A;  1LWW A;  3CVT A;  1QN9 A;  3OC3 C;  1N3A A;  1VOL B;  3OH6 A;  4EJY A;  1MP9 A;  3UW2 A;  3D4V A;  3HS8 A;  5EPC A;  1TUO A;  5F9C A;  2NOL A;  2FGT A;  4WX8 A;  4EAG A;  2OOX A;  3I3W A;  1KY6 A;  1VTO A;  2V9J A;  1UT4 A;  1TGH A;  2O3O A;  4DUL A;  3DPT A;  2QR1 A;  1B9K A;  1JDY A;  5JN5 A;  2D0B A;  3KTU A;  1M3Q A;  3C04 A;  3OSM A;  1P5D X;  2OOY A;  1MPG A;  1M5Q 1;  1TBA B;  2LAE A;  2NWV A;  3NA5 A;  4EJZ A;  2HL8 A;  2HZM A;  1HU0 A;  2JHN A;  2NVM A;  5BMP A;  2Y8Q A;  1RM1 A;  1QN7 A;  3VN5 A;  1V5S A;  1P5G X;  1DIZ A;  2I5W A;  4PY5 A;  2NOZ A;  1AIS A;  1QN6 A;  5KL0 A;  1N3C A;  1QNE A;  2FKM X;  3ENC A;  1QTS A;  1K2Y X;  3OLP A;  1QN3 A;  2D0C A;  1T6A A;  1PVS A;  1YQK A; 
#chains in the Genus database with same CATH homology
 1J3M A;  1Q9U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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