4Q11A

Crystal structure of proteus mirabilis transcriptional regulator protein crl at 1.95a resolution
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
126
structure length
126
Chain Sequence
PTRGKLLKRFAQIGPYIREQQCQESQFFFDCLAVCVNKKVTPEKREFWGWWMELERNGEQLIYYYQVGLFDKNGDWVNQVISKKDVIESIHETLIRFHDFLQAAVSELEMTLVPDEKMSNFPLPLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription regulator
source organism Proteus mirabilis
publication title Structural and functional features of Crl proteins and identification of conserved surface residues required for interaction with the RpoS/ sigma S subunit of RNA polymerase.
pubmed doi rcsb
molecule keywords Sigma factor-binding protein Crl
total genus 37
structure length 126
sequence length 126
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07417 Crl Sigma factor-binding transcriptional regulator Crl
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.230 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 4q11A00
4Q11A 2MZ8A 3RPJA
chains in the Genus database with same CATH superfamily
3HS8A 3EIKA 1TBPA 1P5DX 1M3HA 1QN7A 4EAIA 4CFFA 2HL9A 1MPGA 3KRMA 1M3QA 1Q9UA 3OH9A 2IV9A 2NOHA 1EUVA 2F7LA 3CVSA 4EJZA 3IH7A 1KFQA 2D0AA 3CVTA 5IYCP 1EBMA 1TBAB 2V8QA 3T4NA 1QN5A 4IL8A 1QN9A 1QNCA 2FKFA 2HZMA 2NOBA 1JDYA 1R4XA 4EAJA 1PCJX 1KYFA 2NOEA 1QN3A 5BMPA 1K2YX 2MJ7A 3D7QA 2LAEA 1YQRA 3F10A 3CWSA 4HJHA 2V9JA 1JFIC 5EPCA 2NOFA 4RODB 3NA5A 3I3WA 3TE5A 5F9CA 1NGMA 1QN6A 1P5GX 4MRQA 1KFIA 3BKQX 3UW2A 1YQLA 3KTUA 1VTLE 1VOLB 1KO9A 1QNBA 2Z0FA 1UT7A 4EALA 1XSZA 1YQKA 2G30A 1LXTA 1QTSA 1C47A 1V5SA 2R5XA 3ASMA 4WXAA 1LWYA 3RSMA 4I8OA 1LWWA 4ROCB 3OSEA 3OSTA 2QRCA 5KL0A 3TDHA 1QNEA 3C04A 1PVSA 1FN7A 4B0AA 1YTFA 2YH5A 2Y8LA 2NWVA 3EAYA 4C7PA 1J3MA 3SNSA 4WZSD 3OSMA 3OCIA 1E42A 5HSHA 2XHIA 1C9BB 2Y8QA 4Q11A 2FUVA 2HL8A 2ZFDB 1QNAA 4TPSA 3DPTA 1NH2A 1QTPA 2FKMX 2MZ8A 3OH6A 3CWAA 1CDWA 1KY7A 1PCMX 2OOXA 3HS9A 2HKPA 4D7RA 5BMNA 1RM1A 2NLVA 2NOZA 4EAGA 2VJ0A 3ENCA 1TGHA 4D7QA 2O3OA 4ROEB 2EHBD 1K35A 3DPUA 3VN5A 2I5WA 1KYUA 1UL7A 2QREA 2DKDA 2H4LX 3CW7A 2YA3A 5IYBP 1VTOA 2DKAA 2NOIA 3CWTA 1KY6A 2V92A 3OLPA 1VKLA 1N3AA 1VOKA 1TUOA 1MP9A 2PWWA 1WJWA 1PCZA 2FGTA 1UT4A 2IV8A 3RPJA 3PDKA 3ULXA 1B9KA 2OOYA 1AISA 1N39A 1W80A 2HZSA 1QN4A 2QLVA 5IYDP 1D3UA 3ENOC 2JHNA 3I0WA 1NVPA 1YTBA 2D0CA 2NVMA 3N89A 4WX8A 5JN5A 1YQMA 4PY5A 3CWUA 1PZDA 4BJUA 4QG5A 1QN8A 2JHJA 4DULA 1M5Q1 3OGDA 2QR1A 1LWVA 3H1ZA 2NOLA 2JPIA 2JOIA 5JMVD 2D0BA 2DKCA 3OC3C 5AN4A 1DIZA 4EAKA 2Z8UA 2H5AX 1WQAA 1KYDA 1N3CA 4EJYA 3D4VA 3I0XA 1HU0A 3PMGA 1C4GA 3F0ZA 2QRDA 1T6AA
chains in the Genus database with same CATH topology
3HS8A 3EIKA 1TBPA 1QN7A 1M3HA 3KRMA 1M3QA 2IV9A 2NOHA 4EJZA 3IH7A 2D0AA 5IYCP 1EBMA 1TBAB 1QN5A 2NOBA 1QN9A 1QNCA 2HZMA 1R4XA 1KYFA 2NOEA 1QN3A 2MJ7A 1YQRA 2LAEA 3F10A 1JFIC 2NOFA 4RODB 1NGMA 1QN6A 1YQLA 3KTUA 1VTLE 1VOLB 1KO9A 1QNBA 1UT7A 1YQKA 2G30A 3ASMA 1QTSA 1LWYA 1LWWA 4I8OA 4ROCB 3OSTA 1QNEA 1FN7A 4B0AA 1YTFA 2YH5A 3SNSA 4WZSD 3OSMA 3OCIA 1E42A 2XHIA 1C9BB 4Q11A 1QNAA 4TPSA 3DPTA 1NH2A 1QTPA 2MZ8A 1CDWA 1KY7A 3HS9A 1RM1A 2NOZA 2VJ0A 1TGHA 2O3OA 4ROEB 3DPUA 3VN5A 2I5WA 1KYUA 5IYBP 1VTOA 2NOIA 1KY6A 1N3AA 1VOKA 1MP9A 1PCZA 2FGTA 1UT4A 2IV8A 3RPJA 3ULXA 1B9KA 1AISA 1N39A 1W80A 2HZSA 1QN4A 5IYDP 1D3UA 3I0WA 1YTBA 4PY5A 2D0CA 1YQMA 3N89A 1PZDA 1QN8A 4DULA 1LWVA 3H1ZA 2NOLA 2JOIA 2D0BA 3OC3C 5AN4A 2Z8UA 1KYDA 1N3CA 4EJYA 3I0XA 1HU0A 3F0ZA 1NVPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q11 A;  2MZ8 A;  3RPJ A; 
#chains in the Genus database with same CATH topology
 3HS8 A;  3EIK A;  1TBP A;  1P5D X;  1M3H A;  1QN7 A;  4EAI A;  4CFF A;  2HL9 A;  1MPG A;  3KRM A;  1M3Q A;  1Q9U A;  3OH9 A;  2IV9 A;  2NOH A;  1EUV A;  2F7L A;  3CVS A;  4EJZ A;  3IH7 A;  1KFQ A;  2D0A A;  3CVT A;  5IYC P;  1EBM A;  1TBA B;  2V8Q A;  3T4N A;  1QN5 A;  4IL8 A;  1QN9 A;  1QNC A;  2FKF A;  2HZM A;  2NOB A;  1JDY A;  1R4X A;  4EAJ A;  1PCJ X;  1KYF A;  2NOE A;  1QN3 A;  5BMP A;  1K2Y X;  2MJ7 A;  3D7Q A;  2LAE A;  1YQR A;  3F10 A;  3CWS A;  4HJH A;  2V9J A;  1JFI C;  5EPC A;  2NOF A;  4ROD B;  3NA5 A;  3I3W A;  3TE5 A;  5F9C A;  1NGM A;  1QN6 A;  1P5G X;  4MRQ A;  1KFI A;  3BKQ X;  3UW2 A;  1YQL A;  3KTU A;  1VTL E;  1VOL B;  1KO9 A;  1QNB A;  2Z0F A;  1UT7 A;  4EAL A;  1XSZ A;  1YQK A;  2G30 A;  1LXT A;  1QTS A;  1C47 A;  1V5S A;  2R5X A;  3ASM A;  4WXA A;  1LWY A;  3RSM A;  4I8O A;  1LWW A;  4ROC B;  3OSE A;  3OST A;  2QRC A;  5KL0 A;  3TDH A;  1QNE A;  3C04 A;  1PVS A;  1FN7 A;  4B0A A;  1YTF A;  2YH5 A;  2Y8L A;  2NWV A;  3EAY A;  4C7P A;  1J3M A;  3SNS A;  4WZS D;  3OSM A;  3OCI A;  1E42 A;  5HSH A;  2XHI A;  1C9B B;  2Y8Q A;  4Q11 A;  2FUV A;  2HL8 A;  2ZFD B;  1QNA A;  4TPS A;  3DPT A;  1NH2 A;  1QTP A;  2FKM X;  2MZ8 A;  3OH6 A;  3CWA A;  1CDW A;  1KY7 A;  1PCM X;  2OOX A;  3HS9 A;  2HKP A;  4D7R A;  5BMN A;  1RM1 A;  2NLV A;  2NOZ A;  4EAG A;  2VJ0 A;  3ENC A;  1TGH A;  4D7Q A;  2O3O A;  4ROE B;  2EHB D;  1K35 A;  3DPU A;  3VN5 A;  2I5W A;  1KYU A;  1UL7 A;  2QRE A;  2DKD A;  2H4L X;  3CW7 A;  2YA3 A;  5IYB P;  1VTO A;  2DKA A;  2NOI A;  3CWT A;  1KY6 A;  2V92 A;  3OLP A;  1VKL A;  1N3A A;  1VOK A;  1TUO A;  1MP9 A;  2PWW A;  1WJW A;  1PCZ A;  2FGT A;  1UT4 A;  2IV8 A;  3RPJ A;  3PDK A;  3ULX A;  1B9K A;  2OOY A;  1AIS A;  1N39 A;  1W80 A;  2HZS A;  1QN4 A;  2QLV A;  5IYD P;  1D3U A;  3ENO C;  2JHN A;  3I0W A;  1NVP A;  1YTB A;  2D0C A;  2NVM A;  3N89 A;  4WX8 A;  5JN5 A;  1YQM A;  4PY5 A;  3CWU A;  1PZD A;  4BJU A;  4QG5 A;  1QN8 A;  2JHJ A;  4DUL A;  1M5Q 1;  3OGD A;  2QR1 A;  1LWV A;  3H1Z A;  2NOL A;  2JPI A;  2JOI A;  5JMV D;  2D0B A;  2DKC A;  3OC3 C;  5AN4 A;  1DIZ A;  4EAK A;  2Z8U A;  2H5A X;  1WQA A;  1KYD A;  1N3C A;  4EJY A;  3D4V A;  3I0X A;  1HU0 A;  3PMG A;  1C4G A;  3F0Z A;  2QRD A;  1T6A A; 
#chains in the Genus database with same CATH homology
 3HS8 A;  3EIK A;  1TBP A;  1QN7 A;  1M3H A;  3KRM A;  1M3Q A;  2IV9 A;  2NOH A;  4EJZ A;  3IH7 A;  2D0A A;  5IYC P;  1EBM A;  1TBA B;  1QN5 A;  2NOB A;  1QN9 A;  1QNC A;  2HZM A;  1R4X A;  1KYF A;  2NOE A;  1QN3 A;  2MJ7 A;  1YQR A;  2LAE A;  3F10 A;  1JFI C;  2NOF A;  4ROD B;  1NGM A;  1QN6 A;  1YQL A;  3KTU A;  1VTL E;  1VOL B;  1KO9 A;  1QNB A;  1UT7 A;  1YQK A;  2G30 A;  3ASM A;  1QTS A;  1LWY A;  1LWW A;  4I8O A;  4ROC B;  3OST A;  1QNE A;  1FN7 A;  4B0A A;  1YTF A;  2YH5 A;  3SNS A;  4WZS D;  3OSM A;  3OCI A;  1E42 A;  2XHI A;  1C9B B;  4Q11 A;  1QNA A;  4TPS A;  3DPT A;  1NH2 A;  1QTP A;  2MZ8 A;  1CDW A;  1KY7 A;  3HS9 A;  1RM1 A;  2NOZ A;  2VJ0 A;  1TGH A;  2O3O A;  4ROE B;  3DPU A;  3VN5 A;  2I5W A;  1KYU A;  5IYB P;  1VTO A;  2NOI A;  1KY6 A;  1N3A A;  1VOK A;  1MP9 A;  1PCZ A;  2FGT A;  1UT4 A;  2IV8 A;  3RPJ A;  3ULX A;  1B9K A;  1AIS A;  1N39 A;  1W80 A;  2HZS A;  1QN4 A;  5IYD P;  1D3U A;  3I0W A;  1YTB A;  4PY5 A;  2D0C A;  1YQM A;  3N89 A;  1PZD A;  1QN8 A;  4DUL A;  1LWV A;  3H1Z A;  2NOL A;  2JOI A;  2D0B A;  3OC3 C;  5AN4 A;  2Z8U A;  1KYD A;  1N3C A;  4EJY A;  3I0X A;  1HU0 A;  3F0Z A;  1NVP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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